PLAZA 3.0 Dicots : Binding Sites

MapMan terms associated with a binding site

Binding site: Motif_556
Name: INTRONUPPER
Description: 5' exon-intron splice junctions of plant introns; Plant intron upper sequence; Consensus sequence for plant introns

#Associated genes: 134
#Associated MapMan terms: 92

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MapMan	Description	#Associated genes	ath	bra	egr	gma	ptr	ppe	sly	vvi
27	RNA	22 (16.42%)	2	2	1	3	4	5	2	3
27.3	RNA.regulation of transcription	19 (14.18%)	1	1	1	3	3	5	2	3
29	protein	8 (5.97%)	0	1	0	2	2	0	1	2
26	misc	7 (5.22%)	2	1	0	1	1	1	0	1
30	signalling	7 (5.22%)	0	0	0	2	1	0	1	3
17	hormone metabolism	6 (4.48%)	0	1	0	3	0	1	0	1
1	PS	5 (3.73%)	0	0	0	3	0	0	1	1
1.1	PS.lightreaction	4 (2.99%)	0	0	0	3	0	0	1	0
1.1.3	PS.lightreaction.cytochrome b6/f	4 (2.99%)	0	0	0	3	0	0	1	0
27.3.20	RNA.regulation of transcription.G2-like transcription factor family, GARP	4 (2.99%)	0	0	0	3	0	0	0	1
29.4	protein.postranslational modification	4 (2.99%)	0	0	0	1	1	0	0	2
31	cell	4 (2.99%)	1	0	0	1	1	0	0	1
1.1.3.3	PS.lightreaction.cytochrome b6/f.cytochrome b6 (CYB6)	3 (2.24%)	0	0	0	2	0	0	1	0
16	secondary metabolism	3 (2.24%)	0	0	1	2	0	0	0	0
17.2	hormone metabolism.auxin	3 (2.24%)	0	1	0	2	0	0	0	0
17.2.3	hormone metabolism.auxin.induced-regulated-responsive-activated	3 (2.24%)	0	1	0	2	0	0	0	0
27.3.67	RNA.regulation of transcription.putative transcription regulator	3 (2.24%)	0	0	0	0	0	2	1	0
27.3.99	RNA.regulation of transcription.unclassified	3 (2.24%)	0	1	0	0	2	0	0	0
29.2.1.2.2.13	protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L13	3 (2.24%)	0	0	0	0	0	1	1	1
29.4.1	protein.postranslational modification.kinase	3 (2.24%)	0	0	0	1	1	0	0	1
29.4.1.57	protein.postranslational modification.kinase.receptor like cytoplasmatic kinase VII	3 (2.24%)	0	0	0	1	1	0	0	1
30.2	signalling.receptor kinases	3 (2.24%)	0	0	0	1	0	0	1	1
30.3	signalling.calcium	3 (2.24%)	0	0	0	1	1	0	0	1
11	lipid metabolism	2 (1.49%)	0	1	0	0	0	0	0	1
16.2	secondary metabolism.phenylpropanoids	2 (1.49%)	0	0	0	2	0	0	0	0
16.2.1	secondary metabolism.phenylpropanoids.lignin biosynthesis	2 (1.49%)	0	0	0	2	0	0	0	0
16.2.1.1	secondary metabolism.phenylpropanoids.lignin biosynthesis.PAL	2 (1.49%)	0	0	0	2	0	0	0	0
17.5	hormone metabolism.ethylene	2 (1.49%)	0	0	0	1	0	0	0	1
19	tetrapyrrole synthesis	2 (1.49%)	1	1	0	0	0	0	0	0
19.10	tetrapyrrole synthesis.magnesium chelatase	2 (1.49%)	1	1	0	0	0	0	0	0
20	stress	2 (1.49%)	1	0	0	0	1	0	0	0
20.2	stress.abiotic	2 (1.49%)	1	0	0	0	1	0	0	0
26.10	misc.cytochrome P450	2 (1.49%)	1	0	0	0	0	0	0	1
26.4	misc.beta 1,3 glucan hydrolases	2 (1.49%)	0	0	0	0	1	1	0	0
27.3.11	RNA.regulation of transcription.C2H2 zinc finger family	2 (1.49%)	0	0	1	0	0	1	0	0
27.3.73	RNA.regulation of transcription.Zn-finger(CCHC)	2 (1.49%)	1	0	0	0	0	1	0	0
27.4	RNA.RNA binding	2 (1.49%)	1	1	0	0	0	0	0	0
29.2.1.2.1.17	protein.synthesis.ribosomal protein.eukaryotic.40S subunit.S17	2 (1.49%)	2	0	0	0	0	0	0	0
29.5	protein.degradation	2 (1.49%)	0	0	0	1	0	0	1	0
29.5.11.4.2	protein.degradation.ubiquitin.E3.RING	2 (1.49%)	1	0	0	0	1	0	0	0
29.8	protein.assembly and cofactor ligation	2 (1.49%)	0	1	0	0	1	0	0	0
30.2.17	signalling.receptor kinases.DUF 26	2 (1.49%)	0	0	0	1	0	0	0	1
31.3	cell.cycle	2 (1.49%)	1	0	0	1	0	0	0	0
1.2	PS.photorespiration	1 (0.75%)	0	0	0	0	0	0	0	1
1.2.4	PS.photorespiration.glycine cleavage	1 (0.75%)	0	0	0	0	0	0	0	1
1.2.4.4	PS.photorespiration.glycine cleavage.H protein	1 (0.75%)	0	0	0	0	0	0	0	1
2	major CHO metabolism	1 (0.75%)	0	0	0	0	1	0	0	0
9	mitochondrial electron transport / ATP synthesis	1 (0.75%)	1	0	0	0	0	0	0	0
10	cell wall	1 (0.75%)	0	0	0	0	1	0	0	0
10.6	cell wall.degradation	1 (0.75%)	0	0	0	0	1	0	0	0
10.6.2	cell wall.degradation.mannan-xylose-arabinose-fucose	1 (0.75%)	0	0	0	0	1	0	0	0
11.1	lipid metabolism.FA synthesis and FA elongation	1 (0.75%)	0	0	0	0	0	0	0	1
11.1.10	lipid metabolism.FA synthesis and FA elongation.beta ketoacyl CoA synthase	1 (0.75%)	0	0	0	0	0	0	0	1
11.3	lipid metabolism.Phospholipid synthesis	1 (0.75%)	0	1	0	0	0	0	0	0
11.3.7	lipid metabolism.Phospholipid synthesis.cyclopropane-fatty-acyl-phospholipid synthase	1 (0.75%)	0	1	0	0	0	0	0	0
15	metal handling	1 (0.75%)	0	0	0	1	0	0	0	0
15.2	metal handling.binding, chelation and storage	1 (0.75%)	0	0	0	1	0	0	0	0
16.8	secondary metabolism.flavonoids	1 (0.75%)	0	0	1	0	0	0	0	0
16.8.3	secondary metabolism.flavonoids.dihydroflavonols	1 (0.75%)	0	0	1	0	0	0	0	0
16.8.3.1	secondary metabolism.flavonoids.dihydroflavonols.dihydroflavonol 4-reductase	1 (0.75%)	0	0	1	0	0	0	0	0
17.4	hormone metabolism.cytokinin	1 (0.75%)	0	0	0	0	0	1	0	0
17.4.2	hormone metabolism.cytokinin.signal transduction	1 (0.75%)	0	0	0	0	0	1	0	0
17.5.1	hormone metabolism.ethylene.synthesis-degradation	1 (0.75%)	0	0	0	0	0	0	0	1
17.5.3	hormone metabolism.ethylene.induced-regulated-responsive-activated	1 (0.75%)	0	0	0	1	0	0	0	0
2.2	major CHO metabolism.degradation	1 (0.75%)	0	0	0	0	1	0	0	0
2.2.1	major CHO metabolism.degradation.sucrose	1 (0.75%)	0	0	0	0	1	0	0	0
2.2.1.3	major CHO metabolism.degradation.sucrose.invertases	1 (0.75%)	0	0	0	0	1	0	0	0
2.2.1.3.2	major CHO metabolism.degradation.sucrose.invertases.cell wall	1 (0.75%)	0	0	0	0	1	0	0	0
20.2.1	stress.abiotic.heat	1 (0.75%)	0	0	0	0	1	0	0	0
20.2.99	stress.abiotic.unspecified	1 (0.75%)	1	0	0	0	0	0	0	0
26.12	misc.peroxidases	1 (0.75%)	0	1	0	0	0	0	0	0
26.2	misc.UDP glucosyl and glucoronyl transferases	1 (0.75%)	1	0	0	0	0	0	0	0
26.28	misc.GDSL-motif lipase	1 (0.75%)	0	0	0	1	0	0	0	0
27.1	RNA.processing	1 (0.75%)	0	0	0	0	1	0	0	0
27.1.1	RNA.processing.splicing	1 (0.75%)	0	0	0	0	1	0	0	0
27.3.10	RNA.regulation of transcription.C2C2(Zn) YABBY family	1 (0.75%)	0	0	0	0	0	0	0	1
27.3.18	RNA.regulation of transcription.E2F/DP transcription factor family	1 (0.75%)	0	0	0	0	0	0	0	1
27.3.32	RNA.regulation of transcription.WRKY domain transcription factor family	1 (0.75%)	0	0	0	0	0	0	1	0
27.3.50	RNA.regulation of transcription.General Transcription	1 (0.75%)	0	0	0	0	0	1	0	0
27.3.9	RNA.regulation of transcription.C2C2(Zn) GATA transcription factor family	1 (0.75%)	0	0	0	0	1	0	0	0
29.2.1.2.2.5	protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L5	1 (0.75%)	0	0	0	1	0	0	0	0
29.5.11.4.3.2	protein.degradation.ubiquitin.E3.SCF.FBOX	1 (0.75%)	0	0	0	1	0	0	0	0
29.5.5	protein.degradation.serine protease	1 (0.75%)	0	0	0	1	0	0	0	0
30.2.11	signalling.receptor kinases.leucine rich repeat XI	1 (0.75%)	0	0	0	0	0	0	1	0
9.5	mitochondrial electron transport / ATP synthesis.cytochrome c reductase	1 (0.75%)	1	0	0	0	0	0	0	0
30.5	signalling.G-proteins	1 (0.75%)	0	0	0	0	0	0	0	1
31.1	cell.organisation	1 (0.75%)	0	0	0	0	1	0	0	0
31.2	cell.division	1 (0.75%)	0	0	0	0	0	0	0	1
33	development	1 (0.75%)	0	0	0	0	0	0	0	1
33.3	development.squamosa promoter binding like (SPL)	1 (0.75%)	0	0	0	0	0	0	0	1
34	transport	1 (0.75%)	0	0	0	1	0	0	0	0
34.16	transport.ABC transporters and multidrug resistance systems	1 (0.75%)	0	0	0	1	0	0	0	0