Gene Ontology terms associated with a binding site

Binding site
Motif_500
Name
D1GMAUX28
Description
D1; DNase I protected sequence found in the soybean auxin responsive gene, Aux28, promoter; D1 and D4 share a very similar core sequence TAGTXXCTGT and TAGTXCTGT, respectively; D1/D4-like sequence were identified in several other auxin-responsive genes; Binding site of GmGT-2 which is the GT-2 family of transcription factors; GmGT-2 are down-regulated by light in a phytochrome-dependent manner
#Associated genes
10
#Associated GO terms
178
 
Biological Process
Molecular Function
Cellular Component






Cellular Component (back to top)

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GODescription#Associated genes ath bra cme egr gma ptr ppe sly stu vvi
GO:0005623cell8 (80.00%)1000202111
GO:0044464cell part8 (80.00%)1000202111
GO:0005622intracellular8 (80.00%)1000202111
GO:0043229intracellular organelle8 (80.00%)1000202111
GO:0044424intracellular part8 (80.00%)1000202111
GO:0043226organelle8 (80.00%)1000202111
GO:0043231intracellular membrane-bounded organelle7 (70.00%)1000202101
GO:0032991macromolecular complex7 (70.00%)1000201111
GO:0043227membrane-bounded organelle7 (70.00%)1000202101
GO:0005634nucleus6 (60.00%)1000201101
GO:0030529ribonucleoprotein complex4 (40.00%)0000001111
GO:0005737cytoplasm3 (30.00%)0000001110
GO:0044444cytoplasmic part3 (30.00%)0000001110
GO:0043232intracellular non-membrane-bounded organelle3 (30.00%)1000000110
GO:0043228non-membrane-bounded organelle3 (30.00%)1000000110
GO:0043234protein complex3 (30.00%)1000200000
GO:0019005SCF ubiquitin ligase complex2 (20.00%)0000200000
GO:1902494catalytic complex2 (20.00%)0000200000
GO:0031461cullin-RING ubiquitin ligase complex2 (20.00%)0000200000
GO:0044446intracellular organelle part2 (20.00%)1000000100
GO:0044422organelle part2 (20.00%)1000000100
GO:0005840ribosome2 (20.00%)0000000110
GO:0000151ubiquitin ligase complex2 (20.00%)0000200000
GO:0044430cytoskeletal part1 (10.00%)1000000000
GO:0005856cytoskeleton1 (10.00%)1000000000
GO:0005829cytosol1 (10.00%)0000000100
GO:0022625cytosolic large ribosomal subunit1 (10.00%)0000000100
GO:0044445cytosolic part1 (10.00%)0000000100
GO:0022626cytosolic ribosome1 (10.00%)0000000100
GO:0070013intracellular organelle lumen1 (10.00%)0000000100
GO:0015934large ribosomal subunit1 (10.00%)0000000100
GO:0031974membrane-enclosed lumen1 (10.00%)0000000100
GO:0042579microbody1 (10.00%)0000001000
GO:0005874microtubule1 (10.00%)1000000000
GO:0015630microtubule cytoskeleton1 (10.00%)1000000000
GO:0031981nuclear lumen1 (10.00%)0000000100
GO:0044428nuclear part1 (10.00%)0000000100
GO:0005730nucleolus1 (10.00%)0000000100
GO:0043233organelle lumen1 (10.00%)0000000100
GO:0005777peroxisome1 (10.00%)0000001000
GO:0044391ribosomal subunit1 (10.00%)0000000100
GO:0005819spindle1 (10.00%)1000000000

Biological Process (back to top)

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GODescription#Associated genes ath bra cme egr gma ptr ppe sly stu vvi
GO:0009987cellular process8 (80.00%)1000201121
GO:0008152metabolic process8 (80.00%)0000202121
GO:0071704organic substance metabolic process8 (80.00%)0000202121
GO:0043170macromolecule metabolic process7 (70.00%)0000201121
GO:0044238primary metabolic process7 (70.00%)0000201121
GO:0044260cellular macromolecule metabolic process6 (60.00%)0000201111
GO:0044237cellular metabolic process6 (60.00%)0000201111
GO:0019538protein metabolic process5 (50.00%)0000200120
GO:0044699single-organism process5 (50.00%)1000201010
GO:0044267cellular protein metabolic process4 (40.00%)0000200110
GO:0010467gene expression4 (40.00%)0000001111
GO:0044763single-organism cellular process4 (40.00%)1000200010
GO:0065007biological regulation3 (30.00%)0000200010
GO:0048519negative regulation of biological process3 (30.00%)0000200010
GO:0048523negative regulation of cellular process3 (30.00%)0000200010
GO:0006807nitrogen compound metabolic process3 (30.00%)0000002001
GO:0006508proteolysis3 (30.00%)0000200010
GO:0050789regulation of biological process3 (30.00%)0000200010
GO:0050794regulation of cellular process3 (30.00%)0000200010
GO:0016070RNA metabolic process2 (20.00%)0000001001
GO:0006396RNA processing2 (20.00%)0000001001
GO:0007568aging2 (20.00%)0000200000
GO:0048856anatomical structure development2 (20.00%)0000200000
GO:0009058biosynthetic process2 (20.00%)0000000110
GO:0009056catabolic process2 (20.00%)0000200000
GO:0007154cell communication2 (20.00%)0000200000
GO:0006725cellular aromatic compound metabolic process2 (20.00%)0000001001
GO:0044249cellular biosynthetic process2 (20.00%)0000000110
GO:0044248cellular catabolic process2 (20.00%)0000200000
GO:0034645cellular macromolecule biosynthetic process2 (20.00%)0000000110
GO:0044265cellular macromolecule catabolic process2 (20.00%)0000200000
GO:0034641cellular nitrogen compound metabolic process2 (20.00%)0000001001
GO:0044257cellular protein catabolic process2 (20.00%)0000200000
GO:0070887cellular response to chemical stimulus2 (20.00%)0000200000
GO:0071495cellular response to endogenous stimulus2 (20.00%)0000200000
GO:0071369cellular response to ethylene stimulus2 (20.00%)0000200000
GO:0032870cellular response to hormone stimulus2 (20.00%)0000200000
GO:0071310cellular response to organic substance2 (20.00%)0000200000
GO:0051716cellular response to stimulus2 (20.00%)0000200000
GO:0032502developmental process2 (20.00%)0000200000
GO:0009873ethylene mediated signaling pathway2 (20.00%)0000200000
GO:0046483heterocycle metabolic process2 (20.00%)0000001001
GO:0009755hormone-mediated signaling pathway2 (20.00%)0000200000
GO:0009059macromolecule biosynthetic process2 (20.00%)0000000110
GO:0009057macromolecule catabolic process2 (20.00%)0000200000
GO:0043632modification-dependent macromolecule catabolic process2 (20.00%)0000200000
GO:0019941modification-dependent protein catabolic process2 (20.00%)0000200000
GO:0007275multicellular organismal development2 (20.00%)0000200000
GO:0032501multicellular organismal process2 (20.00%)0000200000
GO:0010648negative regulation of cell communication2 (20.00%)0000200000
GO:0010105negative regulation of ethylene mediated signaling pathway2 (20.00%)0000200000
GO:0070298negative regulation of phosphorelay signal transduction system2 (20.00%)0000200000
GO:0048585negative regulation of response to stimulus2 (20.00%)0000200000
GO:0009968negative regulation of signal transduction2 (20.00%)0000200000
GO:0023057negative regulation of signaling2 (20.00%)0000200000
GO:0090304nucleic acid metabolic process2 (20.00%)0000001001
GO:0006139nucleobase-containing compound metabolic process2 (20.00%)0000001001
GO:0048513organ development2 (20.00%)0000200000
GO:0010260organ senescence2 (20.00%)0000200000
GO:1901360organic cyclic compound metabolic process2 (20.00%)0000001001
GO:1901576organic substance biosynthetic process2 (20.00%)0000000110
GO:1901575organic substance catabolic process2 (20.00%)0000200000
GO:0000160phosphorelay signal transduction system2 (20.00%)0000200000
GO:0030163protein catabolic process2 (20.00%)0000200000
GO:0051603proteolysis involved in cellular protein catabolic process2 (20.00%)0000200000
GO:0010646regulation of cell communication2 (20.00%)0000200000
GO:0010104regulation of ethylene mediated signaling pathway2 (20.00%)0000200000
GO:0070297regulation of phosphorelay signal transduction system2 (20.00%)0000200000
GO:0048583regulation of response to stimulus2 (20.00%)0000200000
GO:0009966regulation of signal transduction2 (20.00%)0000200000
GO:0023051regulation of signaling2 (20.00%)0000200000
GO:0009733response to auxin2 (20.00%)0000200000
GO:0042221response to chemical2 (20.00%)0000200000
GO:0009719response to endogenous stimulus2 (20.00%)0000200000
GO:0009723response to ethylene2 (20.00%)0000200000
GO:0009725response to hormone2 (20.00%)0000200000
GO:0010033response to organic substance2 (20.00%)0000200000
GO:0050896response to stimulus2 (20.00%)0000200000
GO:0007165signal transduction2 (20.00%)0000200000
GO:0023052signaling2 (20.00%)0000200000
GO:0044700single organism signaling2 (20.00%)0000200000
GO:0044707single-multicellular organism process2 (20.00%)0000200000
GO:0044767single-organism developmental process2 (20.00%)0000200000
GO:0048731system development2 (20.00%)0000200000
GO:0006412translation2 (20.00%)0000000110
GO:0006511ubiquitin-dependent protein catabolic process2 (20.00%)0000200000
GO:0009308amine metabolic process1 (10.00%)0000001000
GO:0007049cell cycle1 (10.00%)1000000000
GO:0022402cell cycle process1 (10.00%)1000000000
GO:0008219cell death1 (10.00%)0000000010
GO:0051301cell division1 (10.00%)1000000000
GO:0016043cellular component organization1 (10.00%)1000000000
GO:0071840cellular component organization or biogenesis1 (10.00%)1000000000
GO:0016265death1 (10.00%)0000000010
GO:0007067mitosis1 (10.00%)1000000000
GO:0000278mitotic cell cycle1 (10.00%)1000000000
GO:0060548negative regulation of cell death1 (10.00%)0000000010
GO:0043069negative regulation of programmed cell death1 (10.00%)0000000010
GO:0000280nuclear division1 (10.00%)1000000000
GO:0048285organelle fission1 (10.00%)1000000000
GO:0006996organelle organization1 (10.00%)1000000000
GO:1901564organonitrogen compound metabolic process1 (10.00%)0000001000
GO:0055114oxidation-reduction process1 (10.00%)0000001000
GO:0012501programmed cell death1 (10.00%)0000000010
GO:0010941regulation of cell death1 (10.00%)0000000010
GO:0043067regulation of programmed cell death1 (10.00%)0000000010
GO:0044710single-organism metabolic process1 (10.00%)0000001000

Molecular Function (back to top)

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GODescription#Associated genes ath bra cme egr gma ptr ppe sly stu vvi
GO:0005488binding6 (60.00%)0000302001
GO:0005515protein binding3 (30.00%)0000300000
GO:0003723RNA binding2 (20.00%)0000001001
GO:0003824catalytic activity2 (20.00%)0000001010
GO:1901363heterocyclic compound binding2 (20.00%)0000001001
GO:0003676nucleic acid binding2 (20.00%)0000001001
GO:1901265nucleoside phosphate binding2 (20.00%)0000001001
GO:0000166nucleotide binding2 (20.00%)0000001001
GO:0097159organic cyclic compound binding2 (20.00%)0000001001
GO:0036094small molecule binding2 (20.00%)0000001001
GO:0003735structural constituent of ribosome2 (20.00%)0000000110
GO:0005198structural molecule activity2 (20.00%)0000000110
GO:0043169cation binding1 (10.00%)0000001000
GO:0048037cofactor binding1 (10.00%)0000001000
GO:0005507copper ion binding1 (10.00%)0000001000
GO:0004197cysteine-type endopeptidase activity1 (10.00%)0000000010
GO:0008234cysteine-type peptidase activity1 (10.00%)0000000010
GO:0004175endopeptidase activity1 (10.00%)0000000010
GO:0016787hydrolase activity1 (10.00%)0000000010
GO:0043167ion binding1 (10.00%)0000001000
GO:0046872metal ion binding1 (10.00%)0000001000
GO:0016491oxidoreductase activity1 (10.00%)0000001000
GO:0016638oxidoreductase activity, acting on the CH-NH2 group of donors1 (10.00%)0000001000
GO:0016641oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor1 (10.00%)0000001000
GO:0008233peptidase activity1 (10.00%)0000000010
GO:0070011peptidase activity, acting on L-amino acid peptides1 (10.00%)0000000010
GO:0008131primary amine oxidase activity1 (10.00%)0000001000
GO:0048038quinone binding1 (10.00%)0000001000
GO:0046914transition metal ion binding1 (10.00%)0000001000