PLAZA 3.0 Dicots : Binding Sites

Gene Ontology terms associated with a binding site

Binding site: Motif_496
Name: JASE1ATOPR1
Description: JASE1found in promoter of Arabidopsis thaliana 12-oxo-phytodienoic acid-10,11-reductase (OPR1) gene; Located between -179 and -170; Involved in up-regulation by both senescence and JA;Identical promoter elements are involved in regulation of the OPR1 gene by senescence and jasmonic acid in Arabidopsis

#Associated genes: 9
#Associated GO terms: 147

Biological Process
Molecular Function
Cellular Component

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Molecular Function (back to top)

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GO	Description	#Associated genes	cme	egr	gma	ptr	ppe	vvi
GO:0003824	catalytic activity	6 (66.67%)	1	1	2	0	1	1
GO:0016491	oxidoreductase activity	4 (44.44%)	1	1	0	0	1	1
GO:0016421	CoA carboxylase activity	2 (22.22%)	0	0	2	0	0	0
GO:0003989	acetyl-CoA carboxylase activity	2 (22.22%)	0	0	2	0	0	0
GO:0005488	binding	2 (22.22%)	1	0	0	1	0	0
GO:0016874	ligase activity	2 (22.22%)	0	0	2	0	0	0
GO:0016885	ligase activity, forming carbon-carbon bonds	2 (22.22%)	0	0	2	0	0	0
GO:0003677	DNA binding	1 (11.11%)	1	0	0	0	0	0
GO:1901363	heterocyclic compound binding	1 (11.11%)	1	0	0	0	0	0
GO:0003676	nucleic acid binding	1 (11.11%)	1	0	0	0	0	0
GO:0045735	nutrient reservoir activity	1 (11.11%)	0	0	1	0	0	0
GO:0097159	organic cyclic compound binding	1 (11.11%)	1	0	0	0	0	0
GO:0005515	protein binding	1 (11.11%)	1	0	0	0	0	0

Biological Process (back to top)

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GO	Description	#Associated genes	cme	egr	gma	ppe	vvi
GO:0008152	metabolic process	7 (77.78%)	1	1	2	2	1
GO:0044699	single-organism process	6 (66.67%)	1	1	3	1	0
GO:0044710	single-organism metabolic process	5 (55.56%)	1	1	2	1	0
GO:0009987	cellular process	4 (44.44%)	0	0	3	1	0
GO:0009058	biosynthetic process	3 (33.33%)	0	0	2	1	0
GO:0044249	cellular biosynthetic process	3 (33.33%)	0	0	2	1	0
GO:0044237	cellular metabolic process	3 (33.33%)	0	0	2	1	0
GO:1901576	organic substance biosynthetic process	3 (33.33%)	0	0	2	1	0
GO:0071704	organic substance metabolic process	3 (33.33%)	0	0	2	1	0
GO:0055114	oxidation-reduction process	3 (33.33%)	1	1	0	1	0
GO:0044238	primary metabolic process	3 (33.33%)	0	0	2	1	0
GO:0044763	single-organism cellular process	3 (33.33%)	0	0	3	0	0
GO:0046394	carboxylic acid biosynthetic process	2 (22.22%)	0	0	2	0	0
GO:0019752	carboxylic acid metabolic process	2 (22.22%)	0	0	2	0	0
GO:0044255	cellular lipid metabolic process	2 (22.22%)	0	0	2	0	0
GO:0006633	fatty acid biosynthetic process	2 (22.22%)	0	0	2	0	0
GO:0006631	fatty acid metabolic process	2 (22.22%)	0	0	2	0	0
GO:0008610	lipid biosynthetic process	2 (22.22%)	0	0	2	0	0
GO:0006629	lipid metabolic process	2 (22.22%)	0	0	2	0	0
GO:0072330	monocarboxylic acid biosynthetic process	2 (22.22%)	0	0	2	0	0
GO:0032787	monocarboxylic acid metabolic process	2 (22.22%)	0	0	2	0	0
GO:0016053	organic acid biosynthetic process	2 (22.22%)	0	0	2	0	0
GO:0006082	organic acid metabolic process	2 (22.22%)	0	0	2	0	0
GO:0043436	oxoacid metabolic process	2 (22.22%)	0	0	2	0	0
GO:0044711	single-organism biosynthetic process	2 (22.22%)	0	0	2	0	0
GO:0044283	small molecule biosynthetic process	2 (22.22%)	0	0	2	0	0
GO:0044281	small molecule metabolic process	2 (22.22%)	0	0	2	0	0
GO:0032774	RNA biosynthetic process	1 (11.11%)	0	0	0	1	0
GO:0016070	RNA metabolic process	1 (11.11%)	0	0	0	1	0
GO:0048856	anatomical structure development	1 (11.11%)	0	0	1	0	0
GO:0019438	aromatic compound biosynthetic process	1 (11.11%)	0	0	0	1	0
GO:0065007	biological regulation	1 (11.11%)	0	0	0	1	0
GO:0006725	cellular aromatic compound metabolic process	1 (11.11%)	0	0	0	1	0
GO:0034645	cellular macromolecule biosynthetic process	1 (11.11%)	0	0	0	1	0
GO:0044260	cellular macromolecule metabolic process	1 (11.11%)	0	0	0	1	0
GO:0044271	cellular nitrogen compound biosynthetic process	1 (11.11%)	0	0	0	1	0
GO:0034641	cellular nitrogen compound metabolic process	1 (11.11%)	0	0	0	1	0
GO:0071215	cellular response to abscisic acid stimulus	1 (11.11%)	0	0	1	0	0
GO:0097306	cellular response to alcohol	1 (11.11%)	0	0	1	0	0
GO:0070887	cellular response to chemical stimulus	1 (11.11%)	0	0	1	0	0
GO:0071495	cellular response to endogenous stimulus	1 (11.11%)	0	0	1	0	0
GO:0032870	cellular response to hormone stimulus	1 (11.11%)	0	0	1	0	0
GO:0071396	cellular response to lipid	1 (11.11%)	0	0	1	0	0
GO:0071310	cellular response to organic substance	1 (11.11%)	0	0	1	0	0
GO:1901701	cellular response to oxygen-containing compound	1 (11.11%)	0	0	1	0	0
GO:0051716	cellular response to stimulus	1 (11.11%)	0	0	1	0	0
GO:0032502	developmental process	1 (11.11%)	0	0	1	0	0
GO:0003006	developmental process involved in reproduction	1 (11.11%)	0	0	1	0	0
GO:0009790	embryo development	1 (11.11%)	0	0	1	0	0
GO:0009793	embryo development ending in seed dormancy	1 (11.11%)	0	0	1	0	0
GO:0010154	fruit development	1 (11.11%)	0	0	1	0	0
GO:0010467	gene expression	1 (11.11%)	0	0	0	1	0
GO:0018130	heterocycle biosynthetic process	1 (11.11%)	0	0	0	1	0
GO:0046483	heterocycle metabolic process	1 (11.11%)	0	0	0	1	0
GO:0009059	macromolecule biosynthetic process	1 (11.11%)	0	0	0	1	0
GO:0043170	macromolecule metabolic process	1 (11.11%)	0	0	0	1	0
GO:0032504	multicellular organism reproduction	1 (11.11%)	0	0	1	0	0
GO:0007275	multicellular organismal development	1 (11.11%)	0	0	1	0	0
GO:0032501	multicellular organismal process	1 (11.11%)	0	0	1	0	0
GO:0048609	multicellular organismal reproductive process	1 (11.11%)	0	0	1	0	0
GO:0006807	nitrogen compound metabolic process	1 (11.11%)	0	0	0	1	0
GO:0090304	nucleic acid metabolic process	1 (11.11%)	0	0	0	1	0
GO:0034654	nucleobase-containing compound biosynthetic process	1 (11.11%)	0	0	0	1	0
GO:0006139	nucleobase-containing compound metabolic process	1 (11.11%)	0	0	0	1	0
GO:1901362	organic cyclic compound biosynthetic process	1 (11.11%)	0	0	0	1	0
GO:1901360	organic cyclic compound metabolic process	1 (11.11%)	0	0	0	1	0
GO:0009791	post-embryonic development	1 (11.11%)	0	0	1	0	0
GO:2001141	regulation of RNA biosynthetic process	1 (11.11%)	0	0	0	1	0
GO:0051252	regulation of RNA metabolic process	1 (11.11%)	0	0	0	1	0
GO:0050789	regulation of biological process	1 (11.11%)	0	0	0	1	0
GO:0009889	regulation of biosynthetic process	1 (11.11%)	0	0	0	1	0
GO:0031326	regulation of cellular biosynthetic process	1 (11.11%)	0	0	0	1	0
GO:2000112	regulation of cellular macromolecule biosynthetic process	1 (11.11%)	0	0	0	1	0
GO:0031323	regulation of cellular metabolic process	1 (11.11%)	0	0	0	1	0
GO:0050794	regulation of cellular process	1 (11.11%)	0	0	0	1	0
GO:0010468	regulation of gene expression	1 (11.11%)	0	0	0	1	0
GO:0010556	regulation of macromolecule biosynthetic process	1 (11.11%)	0	0	0	1	0
GO:0060255	regulation of macromolecule metabolic process	1 (11.11%)	0	0	0	1	0
GO:0019222	regulation of metabolic process	1 (11.11%)	0	0	0	1	0
GO:0051171	regulation of nitrogen compound metabolic process	1 (11.11%)	0	0	0	1	0
GO:0019219	regulation of nucleobase-containing compound metabolic process	1 (11.11%)	0	0	0	1	0
GO:0080090	regulation of primary metabolic process	1 (11.11%)	0	0	0	1	0
GO:0006355	regulation of transcription, DNA-dependent	1 (11.11%)	0	0	0	1	0
GO:0000003	reproduction	1 (11.11%)	0	0	1	0	0
GO:0022414	reproductive process	1 (11.11%)	0	0	1	0	0
GO:0048608	reproductive structure development	1 (11.11%)	0	0	1	0	0
GO:0061458	reproductive system development	1 (11.11%)	0	0	1	0	0
GO:0009737	response to abscisic acid	1 (11.11%)	0	0	1	0	0
GO:0097305	response to alcohol	1 (11.11%)	0	0	1	0	0
GO:0042221	response to chemical	1 (11.11%)	0	0	1	0	0
GO:0009719	response to endogenous stimulus	1 (11.11%)	0	0	1	0	0
GO:0009725	response to hormone	1 (11.11%)	0	0	1	0	0
GO:0033993	response to lipid	1 (11.11%)	0	0	1	0	0
GO:0010033	response to organic substance	1 (11.11%)	0	0	1	0	0
GO:1901700	response to oxygen-containing compound	1 (11.11%)	0	0	1	0	0
GO:0050896	response to stimulus	1 (11.11%)	0	0	1	0	0
GO:0048316	seed development	1 (11.11%)	0	0	1	0	0
GO:0009845	seed germination	1 (11.11%)	0	0	1	0	0
GO:0010431	seed maturation	1 (11.11%)	0	0	1	0	0
GO:0090351	seedling development	1 (11.11%)	0	0	1	0	0
GO:0044702	single organism reproductive process	1 (11.11%)	0	0	1	0	0
GO:0044707	single-multicellular organism process	1 (11.11%)	0	0	1	0	0
GO:0044767	single-organism developmental process	1 (11.11%)	0	0	1	0	0
GO:0048731	system development	1 (11.11%)	0	0	1	0	0
GO:0006351	transcription, DNA-templated	1 (11.11%)	0	0	0	1	0

Cellular Component (back to top)

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GO	Description	#Associated genes	gma	ppe
GO:0005623	cell	4 (44.44%)	3	1
GO:0044464	cell part	4 (44.44%)	3	1
GO:0005737	cytoplasm	4 (44.44%)	3	1
GO:0044444	cytoplasmic part	4 (44.44%)	3	1
GO:0005622	intracellular	4 (44.44%)	3	1
GO:0043231	intracellular membrane-bounded organelle	4 (44.44%)	3	1
GO:0043229	intracellular organelle	4 (44.44%)	3	1
GO:0044424	intracellular part	4 (44.44%)	3	1
GO:0043227	membrane-bounded organelle	4 (44.44%)	3	1
GO:0043226	organelle	4 (44.44%)	3	1
GO:0009317	acetyl-CoA carboxylase complex	2 (22.22%)	2	0
GO:1902494	catalytic complex	2 (22.22%)	2	0
GO:0009507	chloroplast	2 (22.22%)	2	0
GO:0009941	chloroplast envelope	2 (22.22%)	2	0
GO:0044434	chloroplast part	2 (22.22%)	2	0
GO:0009570	chloroplast stroma	2 (22.22%)	2	0
GO:0031975	envelope	2 (22.22%)	2	0
GO:0044446	intracellular organelle part	2 (22.22%)	2	0
GO:0032991	macromolecular complex	2 (22.22%)	2	0
GO:0016020	membrane	2 (22.22%)	2	0
GO:0031967	organelle envelope	2 (22.22%)	2	0
GO:0044422	organelle part	2 (22.22%)	2	0
GO:0009536	plastid	2 (22.22%)	2	0
GO:0009526	plastid envelope	2 (22.22%)	2	0
GO:0044435	plastid part	2 (22.22%)	2	0
GO:0009532	plastid stroma	2 (22.22%)	2	0
GO:0043234	protein complex	2 (22.22%)	2	0
GO:0042735	protein body	1 (11.11%)	1	0
GO:0005773	vacuole	1 (11.11%)	0	1