PLAZA 3.0 Dicots : Binding Sites

MapMan terms associated with a binding site

Binding site: Motif_494
Name: TOPOISOM
Description: Topoisomerase cleavage site consensus sequence; Motif found in SAR (scaffold attachment region; or matrix attachment region, MAR)

#Associated genes: 34
#Associated MapMan terms: 29

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MapMan	Description	#Associated genes	ath	bra	egr	gma	ptr	ppe	sly	vvi
27	RNA	6 (17.65%)	0	1	0	0	2	2	0	1
27.3	RNA.regulation of transcription	5 (14.71%)	0	1	0	0	1	2	0	1
30	signalling	4 (11.76%)	0	1	0	1	1	0	0	1
30.3	signalling.calcium	4 (11.76%)	0	1	0	1	1	0	0	1
29	protein	3 (8.82%)	0	0	0	0	0	1	2	0
33	development	3 (8.82%)	1	0	1	1	0	0	0	0
20	stress	2 (5.88%)	0	0	0	1	0	0	0	1
20.2	stress.abiotic	2 (5.88%)	0	0	0	1	0	0	0	1
20.2.1	stress.abiotic.heat	2 (5.88%)	0	0	0	1	0	0	0	1
29.5	protein.degradation	2 (5.88%)	0	0	0	0	0	1	1	0
29.5.11	protein.degradation.ubiquitin	2 (5.88%)	0	0	0	0	0	1	1	0
29.5.11.3	protein.degradation.ubiquitin.E2	2 (5.88%)	0	0	0	0	0	1	1	0
29.5.11.4.2	protein.degradation.ubiquitin.E3.RING	2 (5.88%)	0	2	0	0	0	0	0	0
33.99	development.unspecified	2 (5.88%)	1	0	1	0	0	0	0	0
11	lipid metabolism	1 (2.94%)	0	0	0	0	0	1	0	0
11.3	lipid metabolism.Phospholipid synthesis	1 (2.94%)	0	0	0	0	0	1	0	0
17	hormone metabolism	1 (2.94%)	0	0	0	0	0	1	0	0
17.2	hormone metabolism.auxin	1 (2.94%)	0	0	0	0	0	1	0	0
17.2.3	hormone metabolism.auxin.induced-regulated-responsive-activated	1 (2.94%)	0	0	0	0	0	1	0	0
26	misc	1 (2.94%)	0	0	0	0	0	1	0	0
26.24	misc.GCN5-related N-acetyltransferase	1 (2.94%)	0	0	0	0	0	1	0	0
27.3.22	RNA.regulation of transcription.HB,Homeobox transcription factor family	1 (2.94%)	0	1	0	0	0	0	0	0
27.3.23	RNA.regulation of transcription.HSF,Heat-shock transcription factor family	1 (2.94%)	0	0	0	0	1	0	0	0
27.3.30	RNA.regulation of transcription.Trihelix, Triple-Helix transcription factor family	1 (2.94%)	0	0	0	0	0	1	0	0
27.3.7	RNA.regulation of transcription.C2C2(Zn) CO-like, Constans-like zinc finger family	1 (2.94%)	0	0	0	0	0	1	0	0
27.3.99	RNA.regulation of transcription.unclassified	1 (2.94%)	0	0	0	0	0	0	0	1
27.4	RNA.RNA binding	1 (2.94%)	0	0	0	0	1	0	0	0
29.4	protein.postranslational modification	1 (2.94%)	0	0	0	0	0	0	1	0
33.3	development.squamosa promoter binding like (SPL)	1 (2.94%)	0	0	0	1	0	0	0	0