PLAZA 3.0 Dicots : Binding Sites

InterPro domains associated with a binding site

Binding site: Motif_494
Name: TOPOISOM
Description: Topoisomerase cleavage site consensus sequence; Motif found in SAR (scaffold attachment region; or matrix attachment region, MAR)

#Associated genes: 34
#Associated InterPro terms: 48

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InterPro	Description	#Associated genes	ath	bra	cme	egr	gma	ptr	ppe	sly	vvi
IPR012416	Calmodulin binding protein-like	3 (8.82%)	0	0	0	0	1	1	0	0	1
IPR012881	Protein of unknown function DUF1685	3 (8.82%)	0	0	0	3	0	0	0	0	0
IPR000608	Ubiquitin-conjugating enzyme, E2	3 (8.82%)	0	0	1	0	0	0	1	1	0
IPR023313	Ubiquitin-conjugating enzyme, active site	3 (8.82%)	0	0	1	0	0	0	1	1	0
IPR016135	Ubiquitin-conjugating enzyme/RWD-like	3 (8.82%)	0	0	1	0	0	0	1	1	0
IPR023150	Double Clp-N motif	2 (5.88%)	0	0	0	0	1	0	0	0	1
IPR001356	Homeobox domain	2 (5.88%)	1	1	0	0	0	0	0	0	0
IPR017970	Homeobox, conserved site	2 (5.88%)	1	1	0	0	0	0	0	0	0
IPR009057	Homeodomain-like	2 (5.88%)	1	1	0	0	0	0	0	0	0
IPR003106	Leucine zipper, homeobox-associated	2 (5.88%)	1	1	0	0	0	0	0	0	0
IPR012677	Nucleotide-binding, alpha-beta plait	2 (5.88%)	0	0	0	0	0	1	0	0	1
IPR027417	P-loop containing nucleoside triphosphate hydrolase	2 (5.88%)	0	0	1	0	0	0	0	0	1
IPR000504	RNA recognition motif domain	2 (5.88%)	0	0	0	0	0	1	0	0	1
IPR003593	AAA+ ATPase domain	1 (2.94%)	0	0	1	0	0	0	0	0	0
IPR011704	ATPase, dynein-related, AAA domain	1 (2.94%)	0	0	1	0	0	0	0	0	0
IPR004001	Actin, conserved site	1 (2.94%)	0	0	1	0	0	0	0	0	0
IPR004000	Actin-related protein	1 (2.94%)	0	0	1	0	0	0	0	0	0
IPR020902	Actin/actin-like conserved site	1 (2.94%)	0	0	1	0	0	0	0	0	0
IPR016181	Acyl-CoA N-acyltransferase	1 (2.94%)	0	0	0	0	0	0	1	0	0
IPR026060	Associate of Myc 1	1 (2.94%)	0	0	0	0	0	0	0	0	1
IPR020636	Calcium/calmodulin-dependent/calcium-dependent protein kinase	1 (2.94%)	0	0	0	0	0	0	0	1	0
IPR004176	Clp, N-terminal	1 (2.94%)	0	0	0	0	1	0	0	0	0
IPR004877	Cytochrome b561, eukaryote	1 (2.94%)	0	0	0	0	0	0	1	0	0
IPR006593	Cytochrome b561/ferric reductase transmembrane	1 (2.94%)	0	0	0	0	0	0	1	0	0
IPR005018	DOMON domain	1 (2.94%)	0	0	0	0	0	0	1	0	0
IPR025064	Domain of unknown function DUF4005	1 (2.94%)	0	1	0	0	0	0	0	0	0
IPR000182	GNAT domain	1 (2.94%)	0	0	0	0	0	0	1	0	0
IPR000232	Heat shock factor (HSF)-type, DNA-binding	1 (2.94%)	0	0	0	0	0	1	0	0	0
IPR027725	Heat shock transcription factor family	1 (2.94%)	0	0	0	0	0	1	0	0	0
IPR027709	Heat shock transcription factor, plant	1 (2.94%)	0	0	0	0	0	1	0	0	0
IPR000048	IQ motif, EF-hand binding site	1 (2.94%)	0	1	0	0	0	0	0	0	0
IPR017877	Myb-like domain	1 (2.94%)	0	0	0	0	0	0	1	0	0
IPR003441	NAC domain	1 (2.94%)	0	0	0	1	0	0	0	0	0
IPR004041	NAF domain	1 (2.94%)	0	0	0	0	0	0	0	1	0
IPR018451	NAF/FISL domain	1 (2.94%)	0	0	0	0	0	0	0	1	0
IPR025605	OST-HTH/LOTUS domain	1 (2.94%)	0	0	0	0	0	0	0	0	1
IPR002123	Phospholipid/glycerol acyltransferase	1 (2.94%)	0	0	0	0	0	0	1	0	0
IPR000719	Protein kinase domain	1 (2.94%)	0	0	0	0	0	0	0	1	0
IPR017441	Protein kinase, ATP binding site	1 (2.94%)	0	0	0	0	0	0	0	1	0
IPR011009	Protein kinase-like domain	1 (2.94%)	0	0	0	0	0	0	0	1	0
IPR002290	Serine/threonine- / dual specificity protein kinase, catalytic domain	1 (2.94%)	0	0	0	0	0	0	0	1	0
IPR008271	Serine/threonine-protein kinase, active site	1 (2.94%)	0	0	0	0	0	0	0	1	0
IPR025662	Sigma-54 interaction domain, ATP-binding site 1	1 (2.94%)	0	0	1	0	0	0	0	0	0
IPR004333	Transcription factor, SBP-box	1 (2.94%)	0	0	0	0	1	0	0	0	0
IPR017214	Uncharacterised conserved protein UCP037471	1 (2.94%)	0	0	0	0	0	0	1	0	0
IPR011991	Winged helix-turn-helix DNA-binding domain	1 (2.94%)	0	0	0	0	0	1	0	0	0
IPR000315	Zinc finger, B-box	1 (2.94%)	0	0	0	0	0	0	1	0	0
IPR000571	Zinc finger, CCCH-type	1 (2.94%)	0	0	0	0	0	0	0	0	1