Gene Ontology terms associated with a binding site

Binding site
Motif_494
Name
TOPOISOM
Description
Topoisomerase cleavage site consensus sequence; Motif found in SAR (scaffold attachment region; or matrix attachment region, MAR)
#Associated genes
34
#Associated GO terms
343
 
Biological Process
Molecular Function
Cellular Component






Molecular Function (back to top)

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GODescription#Associated genes ath bra cme egr gma ptr ppe sly stu vvi
GO:0005488binding19 (55.88%)1421232202
GO:1901363heterocyclic compound binding15 (44.12%)1121231202
GO:0097159organic cyclic compound binding15 (44.12%)1121231202
GO:0003676nucleic acid binding11 (32.35%)1101231002
GO:0003677DNA binding9 (26.47%)1101221001
GO:0043167ion binding8 (23.53%)0220001201
GO:0005515protein binding8 (23.53%)0310111001
GO:0003824catalytic activity7 (20.59%)0020003200
GO:0001071nucleic acid binding transcription factor activity6 (17.65%)1100120001
GO:1901265nucleoside phosphate binding6 (17.65%)0020010201
GO:0000166nucleotide binding6 (17.65%)0020010201
GO:0043565sequence-specific DNA binding6 (17.65%)1100120001
GO:0003700sequence-specific DNA binding transcription factor activity6 (17.65%)1100120001
GO:0036094small molecule binding6 (17.65%)0020010201
GO:0005524ATP binding4 (11.76%)0020000200
GO:0030554adenyl nucleotide binding4 (11.76%)0020000200
GO:0032559adenyl ribonucleotide binding4 (11.76%)0020000200
GO:0043168anion binding4 (11.76%)0020000200
GO:0097367carbohydrate derivative binding4 (11.76%)0020000200
GO:0043169cation binding4 (11.76%)0200001001
GO:0046872metal ion binding4 (11.76%)0200001001
GO:0001882nucleoside binding4 (11.76%)0020000200
GO:0001883purine nucleoside binding4 (11.76%)0020000200
GO:0017076purine nucleotide binding4 (11.76%)0020000200
GO:0032550purine ribonucleoside binding4 (11.76%)0020000200
GO:0035639purine ribonucleoside triphosphate binding4 (11.76%)0020000200
GO:0032555purine ribonucleotide binding4 (11.76%)0020000200
GO:0032549ribonucleoside binding4 (11.76%)0020000200
GO:0032553ribonucleotide binding4 (11.76%)0020000200
GO:0016881acid-amino acid ligase activity3 (8.82%)0010001100
GO:0005516calmodulin binding3 (8.82%)0000110001
GO:0016874ligase activity3 (8.82%)0010001100
GO:0016879ligase activity, forming carbon-nitrogen bonds3 (8.82%)0010001100
GO:0016740transferase activity3 (8.82%)0000002100
GO:0046914transition metal ion binding3 (8.82%)0200001000
GO:0008270zinc ion binding3 (8.82%)0200001000
GO:0000975regulatory region DNA binding2 (5.88%)1100000000
GO:0001067regulatory region nucleic acid binding2 (5.88%)1100000000
GO:0044212transcription regulatory region DNA binding2 (5.88%)1100000000
GO:0000976transcription regulatory region sequence-specific DNA binding2 (5.88%)1100000000
GO:0016746transferase activity, transferring acyl groups2 (5.88%)0000002000
GO:0016747transferase activity, transferring acyl groups other than amino-acyl groups2 (5.88%)0000002000
GO:0016887ATPase activity1 (2.94%)0010000000
GO:0008080N-acetyltransferase activity1 (2.94%)0000001000
GO:0016410N-acyltransferase activity1 (2.94%)0000001000
GO:0008374O-acyltransferase activity1 (2.94%)0000001000
GO:0016407acetyltransferase activity1 (2.94%)0000001000
GO:0090447glycerol-3-phosphate 2-O-acyltransferase activity1 (2.94%)0000001000
GO:0016787hydrolase activity1 (2.94%)0010000000
GO:0016817hydrolase activity, acting on acid anhydrides1 (2.94%)0010000000
GO:0016818hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides1 (2.94%)0010000000
GO:0016301kinase activity1 (2.94%)0000000100
GO:0017111nucleoside-triphosphatase activity1 (2.94%)0010000000
GO:0016773phosphotransferase activity, alcohol group as acceptor1 (2.94%)0000000100
GO:0000988protein binding transcription factor activity1 (2.94%)0000000001
GO:0004672protein kinase activity1 (2.94%)0000000100
GO:0004674protein serine/threonine kinase activity1 (2.94%)0000000100
GO:0016462pyrophosphatase activity1 (2.94%)0010000000
GO:0019787small conjugating protein ligase activity1 (2.94%)0000000100
GO:0003713transcription coactivator activity1 (2.94%)0000000001
GO:0003712transcription cofactor activity1 (2.94%)0000000001
GO:0000989transcription factor binding transcription factor activity1 (2.94%)0000000001
GO:0016772transferase activity, transferring phosphorus-containing groups1 (2.94%)0000000100
GO:0004842ubiquitin-protein ligase activity1 (2.94%)0000000100

Cellular Component (back to top)

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GODescription#Associated genes ath bra cme egr gma ptr ppe sly stu vvi
GO:0005623cell10 (29.41%)1120112002
GO:0044464cell part10 (29.41%)1120112002
GO:0005622intracellular9 (26.47%)1120112001
GO:0043229intracellular organelle8 (23.53%)1120111001
GO:0044424intracellular part8 (23.53%)1120111001
GO:0043226organelle8 (23.53%)1120111001
GO:0043231intracellular membrane-bounded organelle6 (17.65%)1110111000
GO:0043227membrane-bounded organelle6 (17.65%)1110111000
GO:0005634nucleus5 (14.71%)1110110000
GO:0005856cytoskeleton3 (8.82%)0020000001
GO:0043232intracellular non-membrane-bounded organelle3 (8.82%)0020000001
GO:0044446intracellular organelle part3 (8.82%)0020000001
GO:0016020membrane3 (8.82%)0010002000
GO:0043228non-membrane-bounded organelle3 (8.82%)0020000001
GO:0044422organelle part3 (8.82%)0020000001
GO:0071944cell periphery2 (5.88%)0010000001
GO:0005618cell wall2 (5.88%)0010000001
GO:0005737cytoplasm2 (5.88%)0010001000
GO:0044444cytoplasmic part2 (5.88%)0010001000
GO:0044430cytoskeletal part2 (5.88%)0010000001
GO:0030312external encapsulating structure2 (5.88%)0010000001
GO:0032991macromolecular complex2 (5.88%)0010000001
GO:0005874microtubule2 (5.88%)0010000001
GO:0015630microtubule cytoskeleton2 (5.88%)0010000001
GO:0005739mitochondrion2 (5.88%)0010001000
GO:0043234protein complex2 (5.88%)0010000001
GO:0030054cell junction1 (2.94%)0010000000
GO:0005911cell-cell junction1 (2.94%)0010000000
GO:0009507chloroplast1 (2.94%)0010000000
GO:0009941chloroplast envelope1 (2.94%)0010000000
GO:0044434chloroplast part1 (2.94%)0010000000
GO:0009570chloroplast stroma1 (2.94%)0010000000
GO:0005829cytosol1 (2.94%)0010000000
GO:0031975envelope1 (2.94%)0010000000
GO:0016021integral to membrane1 (2.94%)0000001000
GO:0070013intracellular organelle lumen1 (2.94%)0010000000
GO:0031224intrinsic to membrane1 (2.94%)0000001000
GO:0044425membrane part1 (2.94%)0000001000
GO:0031974membrane-enclosed lumen1 (2.94%)0010000000
GO:0031981nuclear lumen1 (2.94%)0010000000
GO:0044428nuclear part1 (2.94%)0010000000
GO:0005730nucleolus1 (2.94%)0010000000
GO:0031967organelle envelope1 (2.94%)0010000000
GO:0043233organelle lumen1 (2.94%)0010000000
GO:0009505plant-type cell wall1 (2.94%)0000000001
GO:0005886plasma membrane1 (2.94%)0010000000
GO:0009506plasmodesma1 (2.94%)0010000000
GO:0009536plastid1 (2.94%)0010000000
GO:0009526plastid envelope1 (2.94%)0010000000
GO:0044435plastid part1 (2.94%)0010000000
GO:0009532plastid stroma1 (2.94%)0010000000
GO:0055044symplast1 (2.94%)0010000000

Biological Process (back to top)

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GODescription#Associated genes ath bra cme egr gma ptr ppe sly stu vvi
GO:0008152metabolic process16 (47.06%)1101224203
GO:0009987cellular process15 (44.12%)1111223202
GO:0071704organic substance metabolic process14 (41.18%)1101222203
GO:0044237cellular metabolic process12 (35.29%)1101122202
GO:0065007biological regulation11 (32.35%)1101122102
GO:0043170macromolecule metabolic process11 (32.35%)1101112202
GO:0044238primary metabolic process11 (32.35%)1101112202
GO:0050789regulation of biological process11 (32.35%)1101122102
GO:0050794regulation of cellular process11 (32.35%)1101122102
GO:0019438aromatic compound biosynthetic process10 (29.41%)1101122002
GO:0009058biosynthetic process10 (29.41%)1101122002
GO:0006725cellular aromatic compound metabolic process10 (29.41%)1101122002
GO:0044249cellular biosynthetic process10 (29.41%)1101122002
GO:1901362organic cyclic compound biosynthetic process10 (29.41%)1101122002
GO:1901360organic cyclic compound metabolic process10 (29.41%)1101122002
GO:1901576organic substance biosynthetic process10 (29.41%)1101122002
GO:0009889regulation of biosynthetic process10 (29.41%)1101122002
GO:0031326regulation of cellular biosynthetic process10 (29.41%)1101122002
GO:0031323regulation of cellular metabolic process10 (29.41%)1101122002
GO:0019222regulation of metabolic process10 (29.41%)1101122002
GO:0044260cellular macromolecule metabolic process9 (26.47%)1101012201
GO:0044763single-organism cellular process8 (23.53%)0011211101
GO:0044699single-organism process8 (23.53%)0011211101
GO:0032774RNA biosynthetic process7 (20.59%)1101012001
GO:0016070RNA metabolic process7 (20.59%)1101012001
GO:0034645cellular macromolecule biosynthetic process7 (20.59%)1101012001
GO:0044271cellular nitrogen compound biosynthetic process7 (20.59%)1101012001
GO:0034641cellular nitrogen compound metabolic process7 (20.59%)1101012001
GO:0010467gene expression7 (20.59%)1101012001
GO:0018130heterocycle biosynthetic process7 (20.59%)1101012001
GO:0046483heterocycle metabolic process7 (20.59%)1101012001
GO:0009059macromolecule biosynthetic process7 (20.59%)1101012001
GO:0006807nitrogen compound metabolic process7 (20.59%)1101012001
GO:0090304nucleic acid metabolic process7 (20.59%)1101012001
GO:0034654nucleobase-containing compound biosynthetic process7 (20.59%)1101012001
GO:0006139nucleobase-containing compound metabolic process7 (20.59%)1101012001
GO:2001141regulation of RNA biosynthetic process7 (20.59%)1101012001
GO:0051252regulation of RNA metabolic process7 (20.59%)1101012001
GO:2000112regulation of cellular macromolecule biosynthetic process7 (20.59%)1101012001
GO:0010468regulation of gene expression7 (20.59%)1101012001
GO:0010556regulation of macromolecule biosynthetic process7 (20.59%)1101012001
GO:0060255regulation of macromolecule metabolic process7 (20.59%)1101012001
GO:0051171regulation of nitrogen compound metabolic process7 (20.59%)1101012001
GO:0019219regulation of nucleobase-containing compound metabolic process7 (20.59%)1101012001
GO:0080090regulation of primary metabolic process7 (20.59%)1101012001
GO:0006355regulation of transcription, DNA-dependent7 (20.59%)1101012001
GO:0009628response to abiotic stimulus7 (20.59%)0010121101
GO:0050896response to stimulus7 (20.59%)0010121101
GO:0006351transcription, DNA-templated7 (20.59%)1101012001
GO:0006950response to stress6 (17.65%)0010120101
GO:0019538protein metabolic process5 (14.71%)0000110201
GO:0048856anatomical structure development4 (11.76%)0011101000
GO:0051716cellular response to stimulus4 (11.76%)0000110101
GO:0006952defense response4 (11.76%)0000110101
GO:0098542defense response to other organism4 (11.76%)0000110101
GO:0032502developmental process4 (11.76%)0011101000
GO:0051704multi-organism process4 (11.76%)0000110101
GO:0007275multicellular organismal development4 (11.76%)0011101000
GO:0032501multicellular organismal process4 (11.76%)0011101000
GO:0009607response to biotic stimulus4 (11.76%)0000110101
GO:0042221response to chemical4 (11.76%)0010110001
GO:0010033response to organic substance4 (11.76%)0010110001
GO:0051707response to other organism4 (11.76%)0000110101
GO:0044707single-multicellular organism process4 (11.76%)0011101000
GO:0044767single-organism developmental process4 (11.76%)0011101000
GO:0042537benzene-containing compound metabolic process3 (8.82%)0000110001
GO:0046394carboxylic acid biosynthetic process3 (8.82%)0000110001
GO:0019752carboxylic acid metabolic process3 (8.82%)0000110001
GO:0048869cellular developmental process3 (8.82%)0010101000
GO:0042180cellular ketone metabolic process3 (8.82%)0000110001
GO:0044267cellular protein metabolic process3 (8.82%)0000010200
GO:0070887cellular response to chemical stimulus3 (8.82%)0000110001
GO:0036294cellular response to decreased oxygen levels3 (8.82%)0000110001
GO:0071456cellular response to hypoxia3 (8.82%)0000110001
GO:0071453cellular response to oxygen levels3 (8.82%)0000110001
GO:0033554cellular response to stress3 (8.82%)0000110001
GO:0042742defense response to bacterium3 (8.82%)0000110001
GO:0009816defense response to bacterium, incompatible interaction3 (8.82%)0000110001
GO:0009814defense response, incompatible interaction3 (8.82%)0000110001
GO:0006955immune response3 (8.82%)0000110001
GO:0002376immune system process3 (8.82%)0000110001
GO:0045087innate immune response3 (8.82%)0000110001
GO:0072330monocarboxylic acid biosynthetic process3 (8.82%)0000110001
GO:0032787monocarboxylic acid metabolic process3 (8.82%)0000110001
GO:0016053organic acid biosynthetic process3 (8.82%)0000110001
GO:0006082organic acid metabolic process3 (8.82%)0000110001
GO:1901617organic hydroxy compound biosynthetic process3 (8.82%)0000110001
GO:1901615organic hydroxy compound metabolic process3 (8.82%)0000110001
GO:0043436oxoacid metabolic process3 (8.82%)0000110001
GO:0010565regulation of cellular ketone metabolic process3 (8.82%)0000110001
GO:0031347regulation of defense response3 (8.82%)0000110001
GO:0050776regulation of immune response3 (8.82%)0000110001
GO:0002682regulation of immune system process3 (8.82%)0000110001
GO:0045088regulation of innate immune response3 (8.82%)0000110001
GO:0043900regulation of multi-organism process3 (8.82%)0000110001
GO:0002831regulation of response to biotic stimulus3 (8.82%)0000110001
GO:0048583regulation of response to stimulus3 (8.82%)0000110001
GO:0080134regulation of response to stress3 (8.82%)0000110001
GO:0080142regulation of salicylic acid biosynthetic process3 (8.82%)0000110001
GO:0010337regulation of salicylic acid metabolic process3 (8.82%)0000110001
GO:0010112regulation of systemic acquired resistance3 (8.82%)0000110001
GO:0009617response to bacterium3 (8.82%)0000110001
GO:0036293response to decreased oxygen levels3 (8.82%)0000110001
GO:0001666response to hypoxia3 (8.82%)0000110001
GO:0002237response to molecule of bacterial origin3 (8.82%)0000110001
GO:0070482response to oxygen levels3 (8.82%)0000110001
GO:0009697salicylic acid biosynthetic process3 (8.82%)0000110001
GO:0009696salicylic acid metabolic process3 (8.82%)0000110001
GO:0044711single-organism biosynthetic process3 (8.82%)0000110001
GO:0044710single-organism metabolic process3 (8.82%)0000110001
GO:0044283small molecule biosynthetic process3 (8.82%)0000110001
GO:0044281small molecule metabolic process3 (8.82%)0000110001
GO:0048731system development3 (8.82%)0011100000
GO:0009627systemic acquired resistance3 (8.82%)0000110001
GO:0030154cell differentiation2 (5.88%)0010001000
GO:0048610cellular process involved in reproduction2 (5.88%)0000101000
GO:0006464cellular protein modification process2 (5.88%)0000000200
GO:0003006developmental process involved in reproduction2 (5.88%)0000101000
GO:0048229gametophyte development2 (5.88%)0000101000
GO:0043412macromolecule modification2 (5.88%)0000000200
GO:0048513organ development2 (5.88%)0010100000
GO:0009555pollen development2 (5.88%)0000101000
GO:0009791post-embryonic development2 (5.88%)0010100000
GO:0036211protein modification process2 (5.88%)0000000200
GO:0000003reproduction2 (5.88%)0000101000
GO:0022414reproductive process2 (5.88%)0000101000
GO:0009416response to light stimulus2 (5.88%)0010010000
GO:0009314response to radiation2 (5.88%)0010010000
GO:0048367shoot system development2 (5.88%)0001100000
GO:0044702single organism reproductive process2 (5.88%)0000101000
GO:0009888tissue development2 (5.88%)0011000000
GO:0009653anatomical structure morphogenesis1 (2.94%)0010000000
GO:0048466androecium development1 (2.94%)0000100000
GO:0048653anther development1 (2.94%)0000100000
GO:0006812cation transport1 (2.94%)0000000100
GO:0007154cell communication1 (2.94%)0000000100
GO:0007049cell cycle1 (2.94%)0000100000
GO:0008219cell death1 (2.94%)0001000000
GO:0048468cell development1 (2.94%)0010000000
GO:0051301cell division1 (2.94%)0010000000
GO:0016049cell growth1 (2.94%)0010000000
GO:0048469cell maturation1 (2.94%)0010000000
GO:0016043cellular component organization1 (2.94%)0010000000
GO:0071840cellular component organization or biogenesis1 (2.94%)0010000000
GO:0022412cellular process involved in reproduction in multicellular organism1 (2.94%)0000001000
GO:0007010cytoskeleton organization1 (2.94%)0010000000
GO:0016265death1 (2.94%)0001000000
GO:0050832defense response to fungus1 (2.94%)0000000100
GO:0048588developmental cell growth1 (2.94%)0010000000
GO:0048589developmental growth1 (2.94%)0010000000
GO:0060560developmental growth involved in morphogenesis1 (2.94%)0010000000
GO:0021700developmental maturation1 (2.94%)0010000000
GO:0009553embryo sac development1 (2.94%)0000100000
GO:0009913epidermal cell differentiation1 (2.94%)0010000000
GO:0008544epidermis development1 (2.94%)0010000000
GO:0030855epithelial cell differentiation1 (2.94%)0010000000
GO:0060429epithelium development1 (2.94%)0010000000
GO:0051234establishment of localization1 (2.94%)0000000100
GO:0048437floral organ development1 (2.94%)0000100000
GO:0048438floral whorl development1 (2.94%)0000100000
GO:0009908flower development1 (2.94%)0000100000
GO:0007276gamete generation1 (2.94%)0000001000
GO:0040007growth1 (2.94%)0010000000
GO:0006972hyperosmotic response1 (2.94%)0000000100
GO:0042538hyperosmotic salinity response1 (2.94%)0000000100
GO:0006811ion transport1 (2.94%)0000000100
GO:0051179localization1 (2.94%)0000000100
GO:0048232male gamete generation1 (2.94%)0000001000
GO:0009554megasporogenesis1 (2.94%)0000100000
GO:0051321meiotic cell cycle1 (2.94%)0000100000
GO:0030001metal ion transport1 (2.94%)0000000100
GO:0055046microgametogenesis1 (2.94%)0000001000
GO:0009556microsporogenesis1 (2.94%)0000100000
GO:0015672monovalent inorganic cation transport1 (2.94%)0000000100
GO:0032504multicellular organism reproduction1 (2.94%)0000001000
GO:0048609multicellular organismal reproductive process1 (2.94%)0000001000
GO:0006996organelle organization1 (2.94%)0010000000
GO:0010087phloem or xylem histogenesis1 (2.94%)0001000000
GO:0006796phosphate-containing compound metabolic process1 (2.94%)0000000100
GO:0006793phosphorus metabolic process1 (2.94%)0000000100
GO:0016310phosphorylation1 (2.94%)0000000100
GO:0048827phyllome development1 (2.94%)0000100000
GO:0048236plant-type spore development1 (2.94%)0000100000
GO:0048235pollen sperm cell differentiation1 (2.94%)0000001000
GO:0048569post-embryonic organ development1 (2.94%)0000100000
GO:0043687post-translational protein modification1 (2.94%)0000000100
GO:0012501programmed cell death1 (2.94%)0001000000
GO:0006468protein phosphorylation1 (2.94%)0000000100
GO:0010941regulation of cell death1 (2.94%)0001000000
GO:0032268regulation of cellular protein metabolic process1 (2.94%)0000010000
GO:0043067regulation of programmed cell death1 (2.94%)0001000000
GO:0051246regulation of protein metabolic process1 (2.94%)0000010000
GO:0048608reproductive structure development1 (2.94%)0000100000
GO:0061458reproductive system development1 (2.94%)0000100000
GO:0009733response to auxin1 (2.94%)0010000000
GO:0009719response to endogenous stimulus1 (2.94%)0010000000
GO:0009620response to fungus1 (2.94%)0000000100
GO:0009408response to heat1 (2.94%)0000010000
GO:0009644response to high light intensity1 (2.94%)0000010000
GO:0009725response to hormone1 (2.94%)0010000000
GO:0080167response to karrikin1 (2.94%)0000001000
GO:0009642response to light intensity1 (2.94%)0000010000
GO:0006970response to osmotic stress1 (2.94%)0000000100
GO:0009651response to salt stress1 (2.94%)0000000100
GO:0009266response to temperature stimulus1 (2.94%)0000010000
GO:0009611response to wounding1 (2.94%)0010000000
GO:0048364root development1 (2.94%)0010000000
GO:0010053root epidermal cell differentiation1 (2.94%)0010000000
GO:0080147root hair cell development1 (2.94%)0010000000
GO:0048765root hair cell differentiation1 (2.94%)0010000000
GO:0048767root hair elongation1 (2.94%)0010000000
GO:0010015root morphogenesis1 (2.94%)0010000000
GO:0022622root system development1 (2.94%)0010000000
GO:0009845seed germination1 (2.94%)0010000000
GO:0090351seedling development1 (2.94%)0010000000
GO:0019953sexual reproduction1 (2.94%)0000001000
GO:0007165signal transduction1 (2.94%)0000000100
GO:0023052signaling1 (2.94%)0000000100
GO:0044700single organism signaling1 (2.94%)0000000100
GO:0044765single-organism transport1 (2.94%)0000000100
GO:0043588skin development1 (2.94%)0010000000
GO:0006814sodium ion transport1 (2.94%)0000000100
GO:0048443stamen development1 (2.94%)0000100000
GO:0006810transport1 (2.94%)0000000100
GO:0010054trichoblast differentiation1 (2.94%)0010000000
GO:0048764trichoblast maturation1 (2.94%)0010000000
GO:0010089xylem development1 (2.94%)0001000000