Gene Ontology terms associated with a binding site

Binding site
Motif_487
Name
ACIIIPVPAL2
Description
ACIII element found at -246 to -238 of bean PAL2 promoter; ACIII element is required for vascular-specific gene expression; See also ACIPVPAL2 and ACIIPVPAL2; Three AC-elements, which are possible Myb protein binding sites, together with a G-box, interact to direct the complex patterns of tissu-specific expression of pAL2 gene
#Associated genes
58
#Associated GO terms
668
 
Biological Process
Molecular Function
Cellular Component






Cellular Component (back to top)

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GODescription#Associated genes ath bra cme egr gma ptr ppe sly stu vvi
GO:0005623cell30 (51.72%)2131384134
GO:0044464cell part30 (51.72%)2131384134
GO:0005622intracellular29 (50.00%)2121384134
GO:0044424intracellular part29 (50.00%)2121384134
GO:0043231intracellular membrane-bounded organelle24 (41.38%)1111373133
GO:0043229intracellular organelle24 (41.38%)1111373133
GO:0043227membrane-bounded organelle24 (41.38%)1111373133
GO:0043226organelle24 (41.38%)1111373133
GO:0005634nucleus17 (29.31%)1011332123
GO:0005737cytoplasm15 (25.86%)2110072020
GO:0016020membrane12 (20.69%)0120031212
GO:0044444cytoplasmic part11 (18.97%)0110062010
GO:0044425membrane part6 (10.34%)0000001212
GO:0071944cell periphery5 (8.62%)0120020000
GO:0032991macromolecular complex5 (8.62%)0000021011
GO:0005886plasma membrane5 (8.62%)0120020000
GO:0043234protein complex5 (8.62%)0000021011
GO:0005829cytosol4 (6.90%)0010021000
GO:0016021integral to membrane4 (6.90%)0000000202
GO:0031224intrinsic to membrane4 (6.90%)0000000202
GO:0044446intracellular organelle part3 (5.17%)0000011010
GO:0044422organelle part3 (5.17%)0000011010
GO:1902494catalytic complex2 (3.45%)0000000011
GO:0009507chloroplast2 (3.45%)0000020000
GO:0031975envelope2 (3.45%)0000001010
GO:0005740mitochondrial envelope2 (3.45%)0000001010
GO:0005743mitochondrial inner membrane2 (3.45%)0000001010
GO:0031966mitochondrial membrane2 (3.45%)0000001010
GO:0044455mitochondrial membrane part2 (3.45%)0000001010
GO:0044429mitochondrial part2 (3.45%)0000001010
GO:0005739mitochondrion2 (3.45%)0000001010
GO:0031967organelle envelope2 (3.45%)0000001010
GO:0019866organelle inner membrane2 (3.45%)0000001010
GO:0031090organelle membrane2 (3.45%)0000001010
GO:0009536plastid2 (3.45%)0000020000
GO:0005773vacuole2 (3.45%)0000011000
GO:0005794Golgi apparatus1 (1.72%)0100000000
GO:0030964NADH dehydrogenase complex1 (1.72%)0000000010
GO:0005938cell cortex1 (1.72%)0000010000
GO:0044434chloroplast part1 (1.72%)0000010000
GO:0009570chloroplast stroma1 (1.72%)0000010000
GO:0009534chloroplast thylakoid1 (1.72%)0000010000
GO:0009535chloroplast thylakoid membrane1 (1.72%)0000010000
GO:0005769early endosome1 (1.72%)0000010000
GO:0005768endosome1 (1.72%)0000010000
GO:0005576extracellular region1 (1.72%)1000000000
GO:0005770late endosome1 (1.72%)0000010000
GO:0005741mitochondrial outer membrane1 (1.72%)0000001000
GO:0005742mitochondrial outer membrane translocase complex1 (1.72%)0000001000
GO:0005746mitochondrial respiratory chain1 (1.72%)0000000010
GO:0005747mitochondrial respiratory chain complex I1 (1.72%)0000000010
GO:0031968organelle outer membrane1 (1.72%)0000001000
GO:0031984organelle subcompartment1 (1.72%)0000010000
GO:0019867outer membrane1 (1.72%)0000001000
GO:1990204oxidoreductase complex1 (1.72%)0000000010
GO:0034357photosynthetic membrane1 (1.72%)0000010000
GO:0044435plastid part1 (1.72%)0000010000
GO:0009532plastid stroma1 (1.72%)0000010000
GO:0031976plastid thylakoid1 (1.72%)0000010000
GO:0055035plastid thylakoid membrane1 (1.72%)0000010000
GO:0070469respiratory chain1 (1.72%)0000000010
GO:0045271respiratory chain complex I1 (1.72%)0000000010
GO:0009579thylakoid1 (1.72%)0000010000
GO:0042651thylakoid membrane1 (1.72%)0000010000
GO:0044436thylakoid part1 (1.72%)0000010000
GO:0005667transcription factor complex1 (1.72%)0000010000
GO:0000151ubiquitin ligase complex1 (1.72%)0000000001
GO:0005774vacuolar membrane1 (1.72%)0000001000
GO:0044437vacuolar part1 (1.72%)0000001000

Biological Process (back to top)

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GODescription#Associated genes ath bra cme egr gma ptr ppe sly stu vvi
GO:0009987cellular process36 (62.07%)3131574336
GO:0008152metabolic process30 (51.72%)1121563335
GO:0044237cellular metabolic process28 (48.28%)1121553334
GO:0044699single-organism process27 (46.55%)3120262335
GO:0071704organic substance metabolic process26 (44.83%)1121563124
GO:0044238primary metabolic process25 (43.10%)1121563123
GO:0043170macromolecule metabolic process24 (41.38%)1111553124
GO:0044763single-organism cellular process24 (41.38%)3120252225
GO:0065007biological regulation23 (39.66%)1111553123
GO:0050789regulation of biological process23 (39.66%)1111553123
GO:0044260cellular macromolecule metabolic process22 (37.93%)1111543123
GO:0050794regulation of cellular process21 (36.21%)1111542123
GO:0009058biosynthetic process20 (34.48%)1021543112
GO:0044249cellular biosynthetic process20 (34.48%)1021543112
GO:1901576organic substance biosynthetic process20 (34.48%)1021543112
GO:0006725cellular aromatic compound metabolic process19 (32.76%)1011533122
GO:1901360organic cyclic compound metabolic process19 (32.76%)1011533122
GO:0019438aromatic compound biosynthetic process18 (31.03%)1011533112
GO:0034645cellular macromolecule biosynthetic process18 (31.03%)1011533112
GO:0034641cellular nitrogen compound metabolic process18 (31.03%)1011532122
GO:0010467gene expression18 (31.03%)1011532113
GO:0046483heterocycle metabolic process18 (31.03%)1011532122
GO:0009059macromolecule biosynthetic process18 (31.03%)1011533112
GO:0006807nitrogen compound metabolic process18 (31.03%)1011532122
GO:0090304nucleic acid metabolic process18 (31.03%)1011532122
GO:0006139nucleobase-containing compound metabolic process18 (31.03%)1011532122
GO:1901362organic cyclic compound biosynthetic process18 (31.03%)1011533112
GO:0032774RNA biosynthetic process17 (29.31%)1011532112
GO:0016070RNA metabolic process17 (29.31%)1011532112
GO:0044271cellular nitrogen compound biosynthetic process17 (29.31%)1011532112
GO:0018130heterocycle biosynthetic process17 (29.31%)1011532112
GO:0034654nucleobase-containing compound biosynthetic process17 (29.31%)1011532112
GO:2001141regulation of RNA biosynthetic process17 (29.31%)1011532112
GO:0051252regulation of RNA metabolic process17 (29.31%)1011532112
GO:0009889regulation of biosynthetic process17 (29.31%)1011532112
GO:0031326regulation of cellular biosynthetic process17 (29.31%)1011532112
GO:2000112regulation of cellular macromolecule biosynthetic process17 (29.31%)1011532112
GO:0031323regulation of cellular metabolic process17 (29.31%)1011532112
GO:0010468regulation of gene expression17 (29.31%)1011532112
GO:0010556regulation of macromolecule biosynthetic process17 (29.31%)1011532112
GO:0060255regulation of macromolecule metabolic process17 (29.31%)1011532112
GO:0019222regulation of metabolic process17 (29.31%)1011532112
GO:0051171regulation of nitrogen compound metabolic process17 (29.31%)1011532112
GO:0019219regulation of nucleobase-containing compound metabolic process17 (29.31%)1011532112
GO:0080090regulation of primary metabolic process17 (29.31%)1011532112
GO:0006355regulation of transcription, DNA-dependent17 (29.31%)1011532112
GO:0006351transcription, DNA-templated17 (29.31%)1011532112
GO:0050896response to stimulus16 (27.59%)1122332011
GO:0032502developmental process14 (24.14%)1010341121
GO:0032501multicellular organismal process13 (22.41%)1110240121
GO:0044707single-multicellular organism process13 (22.41%)1110240121
GO:0048856anatomical structure development12 (20.69%)1010240121
GO:0007275multicellular organismal development12 (20.69%)1010240121
GO:0044767single-organism developmental process12 (20.69%)1010240121
GO:0048731system development12 (20.69%)1010240121
GO:0048519negative regulation of biological process11 (18.97%)1100311121
GO:0044710single-organism metabolic process11 (18.97%)1010011331
GO:0006950response to stress10 (17.24%)1022211010
GO:0016043cellular component organization9 (15.52%)1110021120
GO:0071840cellular component organization or biogenesis9 (15.52%)1110021120
GO:0048523negative regulation of cellular process9 (15.52%)1000301121
GO:0051179localization8 (13.79%)0110031002
GO:0048513organ development8 (13.79%)1010220011
GO:0000003reproduction8 (13.79%)0010220111
GO:0009628response to abiotic stimulus8 (13.79%)0121112000
GO:0030154cell differentiation7 (12.07%)1000220011
GO:0048869cellular developmental process7 (12.07%)1000220011
GO:0003006developmental process involved in reproduction7 (12.07%)0010210111
GO:0051234establishment of localization7 (12.07%)0110021002
GO:0009791post-embryonic development7 (12.07%)0010210111
GO:0022414reproductive process7 (12.07%)0010210111
GO:0048608reproductive structure development7 (12.07%)0010210111
GO:0061458reproductive system development7 (12.07%)0010210111
GO:0048367shoot system development7 (12.07%)0010210111
GO:0044702single organism reproductive process7 (12.07%)0010210111
GO:0009888tissue development7 (12.07%)1010220010
GO:0009653anatomical structure morphogenesis6 (10.34%)1010030010
GO:0009913epidermal cell differentiation6 (10.34%)1000220010
GO:0008544epidermis development6 (10.34%)1000220010
GO:0030855epithelial cell differentiation6 (10.34%)1000220010
GO:0060429epithelium development6 (10.34%)1000220010
GO:0042221response to chemical6 (10.34%)0010230000
GO:0043588skin development6 (10.34%)1000220010
GO:0006810transport6 (10.34%)0100021002
GO:0007049cell cycle5 (8.62%)2000010011
GO:0051301cell division5 (8.62%)2000020010
GO:0009790embryo development5 (8.62%)0010200110
GO:0009908flower development5 (8.62%)0000200111
GO:0009719response to endogenous stimulus5 (8.62%)0010220000
GO:0010033response to organic substance5 (8.62%)0010220000
GO:0044711single-organism biosynthetic process5 (8.62%)0010011110
GO:0048468cell development4 (6.90%)1000020010
GO:0000902cell morphogenesis4 (6.90%)1000020010
GO:0000904cell morphogenesis involved in differentiation4 (6.90%)1000020010
GO:0032989cellular component morphogenesis4 (6.90%)1000020010
GO:0051641cellular localization4 (6.90%)0110010001
GO:0045333cellular respiration4 (6.90%)0000000211
GO:0051716cellular response to stimulus4 (6.90%)1100010010
GO:0015980energy derivation by oxidation of organic compounds4 (6.90%)0000000211
GO:0010154fruit development4 (6.90%)0010210000
GO:0006091generation of precursor metabolites and energy4 (6.90%)0000000211
GO:0033036macromolecule localization4 (6.90%)0000030001
GO:0051253negative regulation of RNA metabolic process4 (6.90%)0000101110
GO:0009890negative regulation of biosynthetic process4 (6.90%)0000101110
GO:0031327negative regulation of cellular biosynthetic process4 (6.90%)0000101110
GO:2000113negative regulation of cellular macromolecule biosynthetic process4 (6.90%)0000101110
GO:0031324negative regulation of cellular metabolic process4 (6.90%)0000101110
GO:0010629negative regulation of gene expression4 (6.90%)0000101110
GO:0010558negative regulation of macromolecule biosynthetic process4 (6.90%)0000101110
GO:0010605negative regulation of macromolecule metabolic process4 (6.90%)0000101110
GO:0009892negative regulation of metabolic process4 (6.90%)0000101110
GO:0051172negative regulation of nitrogen compound metabolic process4 (6.90%)0000101110
GO:0045934negative regulation of nucleobase-containing compound metabolic process4 (6.90%)0000101110
GO:0045892negative regulation of transcription, DNA-dependent4 (6.90%)0000101110
GO:0006996organelle organization4 (6.90%)1110000010
GO:0055114oxidation-reduction process4 (6.90%)0000000211
GO:0019538protein metabolic process4 (6.90%)0100020001
GO:0051726regulation of cell cycle4 (6.90%)1000010011
GO:0050793regulation of developmental process4 (6.90%)0000210001
GO:0032879regulation of localization4 (6.90%)0100021000
GO:1901700response to oxygen-containing compound4 (6.90%)0000220000
GO:0009266response to temperature stimulus4 (6.90%)0021001000
GO:0048316seed development4 (6.90%)0010210000
GO:0044765single-organism transport4 (6.90%)0100001002
GO:0010026trichome differentiation4 (6.90%)1000020010
GO:0010090trichome morphogenesis4 (6.90%)1000020010
GO:0009060aerobic respiration3 (5.17%)0000000201
GO:0016051carbohydrate biosynthetic process3 (5.17%)0000001110
GO:0005975carbohydrate metabolic process3 (5.17%)0000001110
GO:0019752carboxylic acid metabolic process3 (5.17%)0010011000
GO:0022402cell cycle process3 (5.17%)2000000010
GO:0071555cell wall organization3 (5.17%)0000001110
GO:0071554cell wall organization or biogenesis3 (5.17%)0000001110
GO:0044267cellular protein metabolic process3 (5.17%)0100010001
GO:0006464cellular protein modification process3 (5.17%)0100010001
GO:0009793embryo development ending in seed dormancy3 (5.17%)0010200000
GO:0051649establishment of localization in cell3 (5.17%)0110000001
GO:0045229external encapsulating structure organization3 (5.17%)0000001110
GO:0048437floral organ development3 (5.17%)0000200001
GO:0010393galacturonan metabolic process3 (5.17%)0000001110
GO:0043412macromolecule modification3 (5.17%)0100010001
GO:0048497maintenance of floral organ identity3 (5.17%)0000200001
GO:0048496maintenance of organ identity3 (5.17%)0000200001
GO:0000278mitotic cell cycle3 (5.17%)2000000010
GO:0032787monocarboxylic acid metabolic process3 (5.17%)0010011000
GO:0045596negative regulation of cell differentiation3 (5.17%)0000200001
GO:0051093negative regulation of developmental process3 (5.17%)0000200001
GO:0006082organic acid metabolic process3 (5.17%)0010011000
GO:0071702organic substance transport3 (5.17%)0000020001
GO:0043436oxoacid metabolic process3 (5.17%)0010011000
GO:0045489pectin biosynthetic process3 (5.17%)0000001110
GO:0045488pectin metabolic process3 (5.17%)0000001110
GO:0009664plant-type cell wall organization3 (5.17%)0000001110
GO:0071669plant-type cell wall organization or biogenesis3 (5.17%)0000001110
GO:0000271polysaccharide biosynthetic process3 (5.17%)0000001110
GO:0005976polysaccharide metabolic process3 (5.17%)0000001110
GO:0051254positive regulation of RNA metabolic process3 (5.17%)0000210000
GO:0048518positive regulation of biological process3 (5.17%)0000210000
GO:0009891positive regulation of biosynthetic process3 (5.17%)0000210000
GO:0031328positive regulation of cellular biosynthetic process3 (5.17%)0000210000
GO:0031325positive regulation of cellular metabolic process3 (5.17%)0000210000
GO:0048522positive regulation of cellular process3 (5.17%)0000210000
GO:0010628positive regulation of gene expression3 (5.17%)0000210000
GO:0010557positive regulation of macromolecule biosynthetic process3 (5.17%)0000210000
GO:0010604positive regulation of macromolecule metabolic process3 (5.17%)0000210000
GO:0009893positive regulation of metabolic process3 (5.17%)0000210000
GO:0051173positive regulation of nitrogen compound metabolic process3 (5.17%)0000210000
GO:0045935positive regulation of nucleobase-containing compound metabolic process3 (5.17%)0000210000
GO:0045893positive regulation of transcription, DNA-dependent3 (5.17%)0000210000
GO:0048569post-embryonic organ development3 (5.17%)0000200001
GO:0008104protein localization3 (5.17%)0000030000
GO:0036211protein modification process3 (5.17%)0100010001
GO:0065008regulation of biological quality3 (5.17%)1000010010
GO:0045595regulation of cell differentiation3 (5.17%)0000200001
GO:0051049regulation of transport3 (5.17%)0100011000
GO:0009408response to heat3 (5.17%)0011001000
GO:0009725response to hormone3 (5.17%)0010020000
GO:0009416response to light stimulus3 (5.17%)0100101000
GO:0009314response to radiation3 (5.17%)0100101000
GO:0044723single-organism carbohydrate metabolic process3 (5.17%)0000001110
GO:0044281small molecule metabolic process3 (5.17%)0010011000
GO:0055085transmembrane transport3 (5.17%)0100001001
GO:0010091trichome branching3 (5.17%)1000010010
GO:0006259DNA metabolic process2 (3.45%)1000000010
GO:0006310DNA recombination2 (3.45%)1000000010
GO:0006281DNA repair2 (3.45%)1000000010
GO:0006820anion transport2 (3.45%)0100001000
GO:0046394carboxylic acid biosynthetic process2 (3.45%)0010010000
GO:0007154cell communication2 (3.45%)0100010000
GO:0000075cell cycle checkpoint2 (3.45%)1000000010
GO:0044770cell cycle phase transition2 (3.45%)1000000010
GO:0031567cell size control checkpoint2 (3.45%)1000000010
GO:0042545cell wall modification2 (3.45%)0000000110
GO:0044255cellular lipid metabolic process2 (3.45%)0010010000
GO:0006974cellular response to DNA damage stimulus2 (3.45%)1000000010
GO:0033554cellular response to stress2 (3.45%)1000000010
GO:0009658chloroplast organization2 (3.45%)0110000000
GO:0009902chloroplast relocation2 (3.45%)0110000000
GO:0006333chromatin assembly or disassembly2 (3.45%)1000000010
GO:0006325chromatin organization2 (3.45%)1000000010
GO:0051276chromosome organization2 (3.45%)1000000010
GO:0007623circadian rhythm2 (3.45%)0000101000
GO:0048825cotyledon development2 (3.45%)0000200000
GO:0006302double-strand break repair2 (3.45%)1000000010
GO:0000724double-strand break repair via homologous recombination2 (3.45%)1000000010
GO:0051656establishment of organelle localization2 (3.45%)0110000000
GO:0051667establishment of plastid localization2 (3.45%)0110000000
GO:0045184establishment of protein localization2 (3.45%)0000020000
GO:0006811ion transport2 (3.45%)0100001000
GO:0048366leaf development2 (3.45%)0000200000
GO:0008610lipid biosynthetic process2 (3.45%)0010010000
GO:0006629lipid metabolic process2 (3.45%)0010010000
GO:0007093mitotic cell cycle checkpoint2 (3.45%)1000000010
GO:0044772mitotic cell cycle phase transition2 (3.45%)1000000010
GO:0072330monocarboxylic acid biosynthetic process2 (3.45%)0010010000
GO:0010192mucilage biosynthetic process2 (3.45%)0000000110
GO:0010191mucilage metabolic process2 (3.45%)0000000110
GO:0048358mucilage pectin biosynthetic process2 (3.45%)0000000110
GO:0048363mucilage pectin metabolic process2 (3.45%)0000000110
GO:0051704multi-organism process2 (3.45%)0001000001
GO:1901988negative regulation of cell cycle phase transition2 (3.45%)1000000010
GO:0010948negative regulation of cell cycle process2 (3.45%)1000000010
GO:1901991negative regulation of mitotic cell cycle phase transition2 (3.45%)1000000010
GO:0051051negative regulation of transport2 (3.45%)0100010000
GO:0051640organelle localization2 (3.45%)0110000000
GO:0016053organic acid biosynthetic process2 (3.45%)0010010000
GO:1901617organic hydroxy compound biosynthetic process2 (3.45%)0000011000
GO:1901615organic hydroxy compound metabolic process2 (3.45%)0000011000
GO:0048827phyllome development2 (3.45%)0000200000
GO:0009827plant-type cell wall modification2 (3.45%)0000000110
GO:0051644plastid localization2 (3.45%)0110000000
GO:0009657plastid organization2 (3.45%)0110000000
GO:0015031protein transport2 (3.45%)0000020000
GO:0006508proteolysis2 (3.45%)0000010001
GO:0000725recombinational repair2 (3.45%)1000000010
GO:0090066regulation of anatomical structure size2 (3.45%)1000000010
GO:0044070regulation of anion transport2 (3.45%)0100001000
GO:1901987regulation of cell cycle phase transition2 (3.45%)1000000010
GO:0010564regulation of cell cycle process2 (3.45%)1000000010
GO:0008361regulation of cell size2 (3.45%)1000000010
GO:0032535regulation of cellular component size2 (3.45%)1000000010
GO:0043269regulation of ion transport2 (3.45%)0100001000
GO:0007346regulation of mitotic cell cycle2 (3.45%)1000000010
GO:1901990regulation of mitotic cell cycle phase transition2 (3.45%)1000000010
GO:0032880regulation of protein localization2 (3.45%)0000020000
GO:0009961response to 1-aminocyclopropane-1-carboxylic acid2 (3.45%)0000200000
GO:0001101response to acid2 (3.45%)0000200000
GO:0043200response to amino acid2 (3.45%)0000200000
GO:0009607response to biotic stimulus2 (3.45%)0001000001
GO:1901698response to nitrogen compound2 (3.45%)0000200000
GO:0010243response to organonitrogen compound2 (3.45%)0000200000
GO:0051707response to other organism2 (3.45%)0001000001
GO:0009639response to red or far red light2 (3.45%)0000101000
GO:0009615response to virus2 (3.45%)0001000001
GO:0009611response to wounding2 (3.45%)0000200000
GO:0048511rhythmic process2 (3.45%)0000101000
GO:0009641shade avoidance2 (3.45%)0000101000
GO:0010016shoot system morphogenesis2 (3.45%)0010010000
GO:0007165signal transduction2 (3.45%)0100010000
GO:0023052signaling2 (3.45%)0100010000
GO:0044700single organism signaling2 (3.45%)0100010000
GO:0044283small molecule biosynthetic process2 (3.45%)0010010000
GO:0006405RNA export from nucleus1 (1.72%)0000000001
GO:0006403RNA localization1 (1.72%)0000000001
GO:0050658RNA transport1 (1.72%)0000000001
GO:0009688abscisic acid biosynthetic process1 (1.72%)0000010000
GO:0009687abscisic acid metabolic process1 (1.72%)0000010000
GO:0046165alcohol biosynthetic process1 (1.72%)0000010000
GO:0006066alcohol metabolic process1 (1.72%)0000010000
GO:0090431alkyl caffeate ester biosynthetic process1 (1.72%)0000001000
GO:0048532anatomical structure arrangement1 (1.72%)0010000000
GO:0048646anatomical structure formation involved in morphogenesis1 (1.72%)0000010000
GO:0043289apocarotenoid biosynthetic process1 (1.72%)0000010000
GO:0043288apocarotenoid metabolic process1 (1.72%)0000010000
GO:0042537benzene-containing compound metabolic process1 (1.72%)0000001000
GO:0022610biological adhesion1 (1.72%)1000000000
GO:0009742brassinosteroid mediated signaling pathway1 (1.72%)0000010000
GO:0009056catabolic process1 (1.72%)0000000001
GO:0009713catechol-containing compound biosynthetic process1 (1.72%)0000001000
GO:0009712catechol-containing compound metabolic process1 (1.72%)0000001000
GO:0007155cell adhesion1 (1.72%)1000000000
GO:0008283cell proliferation1 (1.72%)0000010000
GO:0042546cell wall biogenesis1 (1.72%)0000001000
GO:0044038cell wall macromolecule biosynthetic process1 (1.72%)0000001000
GO:0044036cell wall macromolecule metabolic process1 (1.72%)0000001000
GO:0052325cell wall pectin biosynthetic process1 (1.72%)0000001000
GO:0052546cell wall pectin metabolic process1 (1.72%)0000001000
GO:0070592cell wall polysaccharide biosynthetic process1 (1.72%)0000001000
GO:0010383cell wall polysaccharide metabolic process1 (1.72%)0000001000
GO:0034637cellular carbohydrate biosynthetic process1 (1.72%)0000001000
GO:0044262cellular carbohydrate metabolic process1 (1.72%)0000001000
GO:0044248cellular catabolic process1 (1.72%)0000000001
GO:0044085cellular component biogenesis1 (1.72%)0000001000
GO:0070589cellular component macromolecule biosynthetic process1 (1.72%)0000001000
GO:0044265cellular macromolecule catabolic process1 (1.72%)0000000001
GO:0070727cellular macromolecule localization1 (1.72%)0000010000
GO:0033692cellular polysaccharide biosynthetic process1 (1.72%)0000001000
GO:0044264cellular polysaccharide metabolic process1 (1.72%)0000001000
GO:0048610cellular process involved in reproduction1 (1.72%)0000010000
GO:0060154cellular process regulating host cell cycle in response to virus1 (1.72%)0000000001
GO:0044257cellular protein catabolic process1 (1.72%)0000000001
GO:0034613cellular protein localization1 (1.72%)0000010000
GO:0097306cellular response to alcohol1 (1.72%)0000010000
GO:0071367cellular response to brassinosteroid stimulus1 (1.72%)0000010000
GO:0070887cellular response to chemical stimulus1 (1.72%)0000010000
GO:0071495cellular response to endogenous stimulus1 (1.72%)0000010000
GO:0032870cellular response to hormone stimulus1 (1.72%)0000010000
GO:0071396cellular response to lipid1 (1.72%)0000010000
GO:0071407cellular response to organic cyclic compound1 (1.72%)0000010000
GO:0071310cellular response to organic substance1 (1.72%)0000010000
GO:1901701cellular response to oxygen-containing compound1 (1.72%)0000010000
GO:0071383cellular response to steroid hormone stimulus1 (1.72%)0000010000
GO:0009904chloroplast accumulation movement1 (1.72%)0010000000
GO:0009903chloroplast avoidance movement1 (1.72%)0010000000
GO:0016568chromatin modification1 (1.72%)1000000000
GO:0009802cinnamic acid ester biosynthetic process1 (1.72%)0000001000
GO:0009801cinnamic acid ester metabolic process1 (1.72%)0000001000
GO:0009803cinnamic acid metabolic process1 (1.72%)0000001000
GO:0009631cold acclimation1 (1.72%)0010000000
GO:0032065cortical protein anchoring1 (1.72%)0000010000
GO:0010143cutin biosynthetic process1 (1.72%)0000001000
GO:0000910cytokinesis1 (1.72%)1000000000
GO:0000911cytokinesis by cell plate formation1 (1.72%)1000000000
GO:0032506cytokinetic process1 (1.72%)1000000000
GO:0051220cytoplasmic sequestering of protein1 (1.72%)0000010000
GO:0016482cytoplasmic transport1 (1.72%)0000000001
GO:0006952defense response1 (1.72%)0001000000
GO:0042742defense response to bacterium1 (1.72%)0001000000
GO:0098542defense response to other organism1 (1.72%)0001000000
GO:0051607defense response to virus1 (1.72%)0001000000
GO:0022611dormancy process1 (1.72%)0000010000
GO:0048508embryonic meristem development1 (1.72%)0010000000
GO:0090421embryonic meristem initiation1 (1.72%)0010000000
GO:0051236establishment of RNA localization1 (1.72%)0000000001
GO:0006633fatty acid biosynthetic process1 (1.72%)0010000000
GO:0030497fatty acid elongation1 (1.72%)0010000000
GO:0006631fatty acid metabolic process1 (1.72%)0010000000
GO:0033494ferulate metabolic process1 (1.72%)0000001000
GO:0009755hormone-mediated signaling pathway1 (1.72%)0000010000
GO:0006972hyperosmotic response1 (1.72%)0000010000
GO:0042538hyperosmotic salinity response1 (1.72%)0000010000
GO:0002252immune effector process1 (1.72%)0001000000
GO:0002376immune system process1 (1.72%)0001000000
GO:0046907intracellular transport1 (1.72%)0000000001
GO:0034220ion transmembrane transport1 (1.72%)0100000000
GO:0008299isoprenoid biosynthetic process1 (1.72%)0000010000
GO:0006720isoprenoid metabolic process1 (1.72%)0000010000
GO:0006406mRNA export from nucleus1 (1.72%)0000000001
GO:0051028mRNA transport1 (1.72%)0000000001
GO:0009057macromolecule catabolic process1 (1.72%)0000000001
GO:0051235maintenance of location1 (1.72%)0000010000
GO:0051651maintenance of location in cell1 (1.72%)0000010000
GO:0045185maintenance of protein location1 (1.72%)0000010000
GO:0032507maintenance of protein location in cell1 (1.72%)0000010000
GO:0051321meiotic cell cycle1 (1.72%)0000010000
GO:0048507meristem development1 (1.72%)0010000000
GO:0010014meristem initiation1 (1.72%)0010000000
GO:0009933meristem structural organization1 (1.72%)0010000000
GO:0000281mitotic cytokinesis1 (1.72%)1000000000
GO:1902410mitotic cytokinetic process1 (1.72%)1000000000
GO:0043632modification-dependent macromolecule catabolic process1 (1.72%)0000000001
GO:0019941modification-dependent protein catabolic process1 (1.72%)0000000001
GO:0001763morphogenesis of a branching structure1 (1.72%)0000010000
GO:0032504multicellular organism reproduction1 (1.72%)0000010000
GO:0048609multicellular organismal reproductive process1 (1.72%)0000010000
GO:0010360negative regulation of anion channel activity1 (1.72%)0100000000
GO:0010362negative regulation of anion channel activity by blue light1 (1.72%)0100000000
GO:0032413negative regulation of ion transmembrane transporter activity1 (1.72%)0100000000
GO:0044092negative regulation of molecular function1 (1.72%)0100000000
GO:0051224negative regulation of protein transport1 (1.72%)0000010000
GO:0032410negative regulation of transporter activity1 (1.72%)0100000000
GO:0071705nitrogen compound transport1 (1.72%)0000000001
GO:0051168nuclear export1 (1.72%)0000000001
GO:0051169nuclear transport1 (1.72%)0000000001
GO:0050657nucleic acid transport1 (1.72%)0000000001
GO:0015931nucleobase-containing compound transport1 (1.72%)0000000001
GO:0006913nucleocytoplasmic transport1 (1.72%)0000000001
GO:1901575organic substance catabolic process1 (1.72%)0000000001
GO:0046189phenol-containing compound biosynthetic process1 (1.72%)0000001000
GO:0018958phenol-containing compound metabolic process1 (1.72%)0000001000
GO:0009699phenylpropanoid biosynthetic process1 (1.72%)0000001000
GO:0009698phenylpropanoid metabolic process1 (1.72%)0000001000
GO:0006796phosphate-containing compound metabolic process1 (1.72%)0100000000
GO:0000160phosphorelay signal transduction system1 (1.72%)0100000000
GO:0006793phosphorus metabolic process1 (1.72%)0100000000
GO:0016310phosphorylation1 (1.72%)0100000000
GO:0009638phototropism1 (1.72%)0100000000
GO:0009832plant-type cell wall biogenesis1 (1.72%)0000001000
GO:0016973poly(A)+ mRNA export from nucleus1 (1.72%)0000000001
GO:0045787positive regulation of cell cycle1 (1.72%)0000010000
GO:0008284positive regulation of cell proliferation1 (1.72%)0000010000
GO:0051446positive regulation of meiotic cell cycle1 (1.72%)0000010000
GO:0010072primary shoot apical meristem specification1 (1.72%)0010000000
GO:0046777protein autophosphorylation1 (1.72%)0100000000
GO:0030163protein catabolic process1 (1.72%)0000000001
GO:0032446protein modification by small protein conjugation1 (1.72%)0000000001
GO:0070647protein modification by small protein conjugation or removal1 (1.72%)0000000001
GO:0006468protein phosphorylation1 (1.72%)0100000000
GO:0016567protein ubiquitination1 (1.72%)0000000001
GO:0051603proteolysis involved in cellular protein catabolic process1 (1.72%)0000000001
GO:0022603regulation of anatomical structure morphogenesis1 (1.72%)0000010000
GO:0010359regulation of anion channel activity1 (1.72%)0100000000
GO:0010361regulation of anion channel activity by blue light1 (1.72%)0100000000
GO:0051302regulation of cell division1 (1.72%)0000010000
GO:0042127regulation of cell proliferation1 (1.72%)0000010000
GO:0070201regulation of establishment of protein localization1 (1.72%)0000010000
GO:0034765regulation of ion transmembrane transport1 (1.72%)0100000000
GO:0032412regulation of ion transmembrane transporter activity1 (1.72%)0100000000
GO:0051445regulation of meiotic cell cycle1 (1.72%)0000010000
GO:0065009regulation of molecular function1 (1.72%)0100000000
GO:0060688regulation of morphogenesis of a branching structure1 (1.72%)0000010000
GO:2000026regulation of multicellular organismal development1 (1.72%)0000010000
GO:0051239regulation of multicellular organismal process1 (1.72%)0000010000
GO:0051223regulation of protein transport1 (1.72%)0000010000
GO:2000032regulation of secondary shoot formation1 (1.72%)0000010000
GO:0048831regulation of shoot system development1 (1.72%)0000010000
GO:1900618regulation of shoot system morphogenesis1 (1.72%)0000010000
GO:0034762regulation of transmembrane transport1 (1.72%)0100000000
GO:0022898regulation of transmembrane transporter activity1 (1.72%)0100000000
GO:0032409regulation of transporter activity1 (1.72%)0100000000
GO:0097305response to alcohol1 (1.72%)0000010000
GO:0009733response to auxin1 (1.72%)0000010000
GO:0009617response to bacterium1 (1.72%)0001000000
GO:0009637response to blue light1 (1.72%)0100000000
GO:0009741response to brassinosteroid1 (1.72%)0000010000
GO:0009409response to cold1 (1.72%)0010000000
GO:0009735response to cytokinin1 (1.72%)0010000000
GO:0009605response to external stimulus1 (1.72%)0100000000
GO:0010035response to inorganic substance1 (1.72%)0000010000
GO:0033993response to lipid1 (1.72%)0000010000
GO:0014070response to organic cyclic compound1 (1.72%)0000010000
GO:0006970response to osmotic stress1 (1.72%)0000010000
GO:0009651response to salt stress1 (1.72%)0000010000
GO:0048545response to steroid hormone1 (1.72%)0000010000
GO:0009415response to water1 (1.72%)0000010000
GO:0009414response to water deprivation1 (1.72%)0000010000
GO:0048364root development1 (1.72%)0010000000
GO:0022622root system development1 (1.72%)0010000000
GO:0019748secondary metabolic process1 (1.72%)0000001000
GO:0044550secondary metabolite biosynthetic process1 (1.72%)0000001000
GO:0010223secondary shoot formation1 (1.72%)0000010000
GO:0010162seed dormancy process1 (1.72%)0000010000
GO:0010431seed maturation1 (1.72%)0000010000
GO:0016106sesquiterpenoid biosynthetic process1 (1.72%)0000010000
GO:0006714sesquiterpenoid metabolic process1 (1.72%)0000010000
GO:0010346shoot axis formation1 (1.72%)0000010000
GO:0043401steroid hormone mediated signaling pathway1 (1.72%)0000010000
GO:0010118stomatal movement1 (1.72%)0100000000
GO:0010345suberin biosynthetic process1 (1.72%)0000001000
GO:0016114terpenoid biosynthetic process1 (1.72%)0000010000
GO:0006721terpenoid metabolic process1 (1.72%)0000010000
GO:0009606tropism1 (1.72%)0100000000
GO:0006511ubiquitin-dependent protein catabolic process1 (1.72%)0000000001

Molecular Function (back to top)

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GODescription#Associated genes ath bra cme egr gma ptr ppe sly stu vvi
GO:0005488binding39 (67.24%)1345472436
GO:0005515protein binding22 (37.93%)1224051223
GO:1901363heterocyclic compound binding20 (34.48%)0222421205
GO:0097159organic cyclic compound binding20 (34.48%)0222421205
GO:0003824catalytic activity15 (25.86%)0121032213
GO:0003676nucleic acid binding14 (24.14%)0112421003
GO:0043167ion binding13 (22.41%)0210020314
GO:0003677DNA binding11 (18.97%)0011421002
GO:0043169cation binding11 (18.97%)0110020313
GO:0046872metal ion binding11 (18.97%)0110020313
GO:0001071nucleic acid binding transcription factor activity9 (15.52%)0011411001
GO:0043565sequence-specific DNA binding9 (15.52%)0011401002
GO:0003700sequence-specific DNA binding transcription factor activity9 (15.52%)0011411001
GO:0046914transition metal ion binding7 (12.07%)0100000312
GO:0016787hydrolase activity5 (8.62%)0011020001
GO:0016491oxidoreductase activity5 (8.62%)0000010211
GO:0022857transmembrane transporter activity5 (8.62%)0000001202
GO:0005215transporter activity5 (8.62%)0000001202
GO:0043168anion binding4 (6.90%)0110010001
GO:0015075ion transmembrane transporter activity4 (6.90%)0000001201
GO:0008289lipid binding4 (6.90%)0000210001
GO:0000988protein binding transcription factor activity4 (6.90%)0000101110
GO:0022891substrate-specific transmembrane transporter activity4 (6.90%)0000001201
GO:0022892substrate-specific transporter activity4 (6.90%)0000001201
GO:0003712transcription cofactor activity4 (6.90%)0000101110
GO:0000989transcription factor binding transcription factor activity4 (6.90%)0000101110
GO:0008270zinc ion binding4 (6.90%)0100000111
GO:0005524ATP binding3 (5.17%)0110000001
GO:0005088Ras guanyl-nucleotide exchange factor activity3 (5.17%)0001010001
GO:0005089Rho guanyl-nucleotide exchange factor activity3 (5.17%)0001010001
GO:0030554adenyl nucleotide binding3 (5.17%)0110000001
GO:0032559adenyl ribonucleotide binding3 (5.17%)0110000001
GO:0097367carbohydrate derivative binding3 (5.17%)0110000001
GO:0008324cation transmembrane transporter activity3 (5.17%)0000000201
GO:0004129cytochrome-c oxidase activity3 (5.17%)0000000201
GO:0009055electron carrier activity3 (5.17%)0000000201
GO:0005085guanyl-nucleotide exchange factor activity3 (5.17%)0001010001
GO:0020037heme binding3 (5.17%)0000000201
GO:0015002heme-copper terminal oxidase activity3 (5.17%)0000000201
GO:0015078hydrogen ion transmembrane transporter activity3 (5.17%)0000000201
GO:0016788hydrolase activity, acting on ester bonds3 (5.17%)0011010000
GO:0022890inorganic cation transmembrane transporter activity3 (5.17%)0000000201
GO:0005506iron ion binding3 (5.17%)0000000201
GO:0015077monovalent inorganic cation transmembrane transporter activity3 (5.17%)0000000201
GO:0001882nucleoside binding3 (5.17%)0110000001
GO:1901265nucleoside phosphate binding3 (5.17%)0110000001
GO:0000166nucleotide binding3 (5.17%)0110000001
GO:0016675oxidoreductase activity, acting on a heme group of donors3 (5.17%)0000000201
GO:0016676oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor3 (5.17%)0000000201
GO:0016791phosphatase activity3 (5.17%)0011010000
GO:0042578phosphoric ester hydrolase activity3 (5.17%)0011010000
GO:0001883purine nucleoside binding3 (5.17%)0110000001
GO:0017076purine nucleotide binding3 (5.17%)0110000001
GO:0032550purine ribonucleoside binding3 (5.17%)0110000001
GO:0035639purine ribonucleoside triphosphate binding3 (5.17%)0110000001
GO:0032555purine ribonucleotide binding3 (5.17%)0110000001
GO:0032549ribonucleoside binding3 (5.17%)0110000001
GO:0032553ribonucleotide binding3 (5.17%)0110000001
GO:0036094small molecule binding3 (5.17%)0110000001
GO:0046906tetrapyrrole binding3 (5.17%)0000000201
GO:0016874ligase activity2 (3.45%)0010000001
GO:0016879ligase activity, forming carbon-nitrogen bonds2 (3.45%)0010000001
GO:0003713transcription coactivator activity2 (3.45%)0000000110
GO:0016740transferase activity2 (3.45%)0100001000
GO:00455499-cis-epoxycarotenoid dioxygenase activity1 (1.72%)0000010000
GO:0016887ATPase activity1 (1.72%)0000000001
GO:0042623ATPase activity, coupled1 (1.72%)0000000001
GO:0043492ATPase activity, coupled to movement of substances1 (1.72%)0000000001
GO:0042626ATPase activity, coupled to transmembrane movement of substances1 (1.72%)0000000001
GO:0016421CoA carboxylase activity1 (1.72%)0010000000
GO:0010181FMN binding1 (1.72%)0100000000
GO:0050136NADH dehydrogenase (quinone) activity1 (1.72%)0000000010
GO:0008137NADH dehydrogenase (ubiquinone) activity1 (1.72%)0000000010
GO:0003954NADH dehydrogenase activity1 (1.72%)0000000010
GO:0015405P-P-bond-hydrolysis-driven transmembrane transporter activity1 (1.72%)0000000001
GO:0003723RNA binding1 (1.72%)0001000000
GO:0003989acetyl-CoA carboxylase activity1 (1.72%)0010000000
GO:0016881acid-amino acid ligase activity1 (1.72%)0000000001
GO:0022804active transmembrane transporter activity1 (1.72%)0000000001
GO:0005253anion channel activity1 (1.72%)0000001000
GO:0008509anion transmembrane transporter activity1 (1.72%)0000001000
GO:0004075biotin carboxylase activity1 (1.72%)0010000000
GO:0009882blue light photoreceptor activity1 (1.72%)0100000000
GO:0090430caffeoyl-CoA: alcohol caffeoyl transferase activity1 (1.72%)0000001000
GO:0005509calcium ion binding1 (1.72%)0000010000
GO:0004180carboxypeptidase activity1 (1.72%)0000010000
GO:0010436carotenoid dioxygenase activity1 (1.72%)0000010000
GO:0015267channel activity1 (1.72%)0000001000
GO:0050897cobalt ion binding1 (1.72%)0000000010
GO:0050662coenzyme binding1 (1.72%)0100000000
GO:0048037cofactor binding1 (1.72%)0100000000
GO:0051213dioxygenase activity1 (1.72%)0000010000
GO:0008238exopeptidase activity1 (1.72%)0000010000
GO:0022836gated channel activity1 (1.72%)0000001000
GO:0016817hydrolase activity, acting on acid anhydrides1 (1.72%)0000000001
GO:0016820hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances1 (1.72%)0000000001
GO:0016818hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides1 (1.72%)0000000001
GO:0050734hydroxycinnamoyltransferase activity1 (1.72%)0000001000
GO:0042802identical protein binding1 (1.72%)0100000000
GO:0005216ion channel activity1 (1.72%)0000001000
GO:0022839ion gated channel activity1 (1.72%)0000001000
GO:0016301kinase activity1 (1.72%)0100000000
GO:0016885ligase activity, forming carbon-carbon bonds1 (1.72%)0010000000
GO:0060089molecular transducer activity1 (1.72%)0100000000
GO:0017111nucleoside-triphosphatase activity1 (1.72%)0000000001
GO:0016651oxidoreductase activity, acting on NAD(P)H1 (1.72%)0000000010
GO:0016655oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor1 (1.72%)0000000010
GO:0016701oxidoreductase activity, acting on single donors with incorporation of molecular oxygen1 (1.72%)0000010000
GO:0016702oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen1 (1.72%)0000010000
GO:0022803passive transmembrane transporter activity1 (1.72%)0000001000
GO:0008233peptidase activity1 (1.72%)0000010000
GO:0070011peptidase activity, acting on L-amino acid peptides1 (1.72%)0000010000
GO:0005543phospholipid binding1 (1.72%)0000010000
GO:0004721phosphoprotein phosphatase activity1 (1.72%)0000010000
GO:0000155phosphorelay sensor kinase activity1 (1.72%)0100000000
GO:0016773phosphotransferase activity, alcohol group as acceptor1 (1.72%)0100000000
GO:0016775phosphotransferase activity, nitrogenous group as acceptor1 (1.72%)0100000000
GO:0009881photoreceptor activity1 (1.72%)0100000000
GO:0015399primary active transmembrane transporter activity1 (1.72%)0000000001
GO:0046983protein dimerization activity1 (1.72%)0000000001
GO:0046982protein heterodimerization activity1 (1.72%)0000000001
GO:0004673protein histidine kinase activity1 (1.72%)0100000000
GO:0004672protein kinase activity1 (1.72%)0100000000
GO:0004674protein serine/threonine kinase activity1 (1.72%)0100000000
GO:0004722protein serine/threonine phosphatase activity1 (1.72%)0000010000
GO:0016462pyrophosphatase activity1 (1.72%)0000000001
GO:0004872receptor activity1 (1.72%)0100000000
GO:0017171serine hydrolase activity1 (1.72%)0000010000
GO:0004185serine-type carboxypeptidase activity1 (1.72%)0000010000
GO:0070008serine-type exopeptidase activity1 (1.72%)0000010000
GO:0008236serine-type peptidase activity1 (1.72%)0000010000
GO:0035197siRNA binding1 (1.72%)0001000000
GO:0004871signal transducer activity1 (1.72%)0100000000
GO:0038023signaling receptor activity1 (1.72%)0100000000
GO:0032182small conjugating protein binding1 (1.72%)0000010000
GO:0019787small conjugating protein ligase activity1 (1.72%)0000000001
GO:0022838substrate-specific channel activity1 (1.72%)0000001000
GO:0016746transferase activity, transferring acyl groups1 (1.72%)0000001000
GO:0016747transferase activity, transferring acyl groups other than amino-acyl groups1 (1.72%)0000001000
GO:0016772transferase activity, transferring phosphorus-containing groups1 (1.72%)0100000000
GO:0043130ubiquitin binding1 (1.72%)0000010000
GO:0004842ubiquitin-protein ligase activity1 (1.72%)0000000001
GO:0034450ubiquitin-ubiquitin ligase activity1 (1.72%)0000000001
GO:0008308voltage-gated anion channel activity1 (1.72%)0000001000
GO:0022832voltage-gated channel activity1 (1.72%)0000001000
GO:0005244voltage-gated ion channel activity1 (1.72%)0000001000