PLAZA 3.0 Dicots : Binding Sites

MapMan terms associated with a binding site

Binding site: Motif_435
Name: E2FBNTRNR
Description: E2Fb found in the tobacco RNR (Ribonucleotide reductase) gene promoter; Binding site of tobacco E2F; Involved in upregulation of the promoter at G1/S transition; dE2F (distal reverse E2F element) important for regulating specific RNR1a gene expression in respsonse to UV-C irradiation

#Associated genes: 312
#Associated MapMan terms: 105

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MapMan	Description	#Associated genes	ath	bra	egr	gma	ptr	ppe	sly	vvi
27	RNA	47 (15.06%)	1	7	7	9	12	4	3	4
27.3	RNA.regulation of transcription	41 (13.14%)	1	4	6	9	12	4	2	3
28	DNA	26 (8.33%)	2	3	3	3	5	4	2	4
29	protein	22 (7.05%)	1	0	3	4	4	4	1	5
34	transport	22 (7.05%)	1	1	1	6	3	5	2	3
29.4	protein.postranslational modification	19 (6.09%)	1	0	3	4	3	3	1	4
28.1	DNA.synthesis/chromatin structure	18 (5.77%)	1	2	2	1	4	3	2	3
31	cell	18 (5.77%)	1	2	1	7	3	3	0	1
30	signalling	14 (4.49%)	1	1	0	3	5	1	3	0
26	misc	11 (3.53%)	0	2	1	1	3	2	1	1
27.3.3	RNA.regulation of transcription.AP2/EREBP, APETALA2/Ethylene-responsive element binding protein family	9 (2.88%)	1	2	2	0	2	2	0	0
29.5.11.4.2	protein.degradation.ubiquitin.E3.RING	9 (2.88%)	0	0	1	5	0	1	0	2
34.1	transport.p- and v-ATPases	9 (2.88%)	0	0	1	3	1	2	0	2
26.2	misc.UDP glucosyl and glucoronyl transferases	8 (2.56%)	0	0	1	0	3	2	1	1
28.2	DNA.repair	8 (2.56%)	1	1	1	2	1	1	0	1
31.1	cell.organisation	8 (2.56%)	0	0	0	4	2	1	0	1
27.3.14	RNA.regulation of transcription.CCAAT box binding factor family, HAP2	7 (2.24%)	0	0	0	4	2	0	0	1
31.2	cell.division	7 (2.24%)	1	2	1	2	0	1	0	0
10	cell wall	6 (1.92%)	0	0	1	3	1	1	0	0
17	hormone metabolism	6 (1.92%)	0	0	1	1	2	0	1	1
10.7	cell wall.modification	5 (1.60%)	0	0	1	3	0	1	0	0
27.1	RNA.processing	5 (1.60%)	0	3	1	0	0	0	1	0
29.4.1	protein.postranslational modification.kinase	5 (1.60%)	1	0	0	0	1	0	0	3
30.11	signalling.light	5 (1.60%)	0	0	0	1	2	1	1	0
30.2	signalling.receptor kinases	5 (1.60%)	1	0	0	2	0	0	2	0
33	development	5 (1.60%)	0	1	0	1	1	1	1	0
33.99	development.unspecified	5 (1.60%)	0	1	0	1	1	1	1	0
34.19	transport.Major Intrinsic Proteins	5 (1.60%)	0	0	0	3	2	0	0	0
34.19.1	transport.Major Intrinsic Proteins.PIP	5 (1.60%)	0	0	0	3	2	0	0	0
34.4	transport.nitrate	5 (1.60%)	0	0	0	0	0	2	2	1
27.3.25	RNA.regulation of transcription.MYB domain transcription factor family	4 (1.28%)	0	0	1	1	1	1	0	0
17.5	hormone metabolism.ethylene	3 (0.96%)	0	0	1	0	1	0	0	1
21	redox	3 (0.96%)	1	2	0	0	0	0	0	0
21.2	redox.ascorbate and glutathione	3 (0.96%)	1	2	0	0	0	0	0	0
21.2.1	redox.ascorbate and glutathione.ascorbate	3 (0.96%)	1	2	0	0	0	0	0	0
21.2.1.2	redox.ascorbate and glutathione.ascorbate.GDP-L-galactose-hexose-1-phosphate guanyltransferase	3 (0.96%)	1	2	0	0	0	0	0	0
27.3.57	RNA.regulation of transcription.JUMONJI family	3 (0.96%)	0	0	1	0	2	0	0	0
27.3.99	RNA.regulation of transcription.unclassified	3 (0.96%)	0	0	0	1	0	0	1	1
29.4.1.57	protein.postranslational modification.kinase.receptor like cytoplasmatic kinase VII	3 (0.96%)	0	0	0	0	0	0	0	3
29.5.11.4.4	protein.degradation.ubiquitin.E3.APC	3 (0.96%)	0	0	1	0	0	0	1	1
30.2.17	signalling.receptor kinases.DUF 26	3 (0.96%)	1	0	0	0	0	0	2	0
2	major CHO metabolism	2 (0.64%)	0	0	0	1	0	0	0	1
17.2	hormone metabolism.auxin	2 (0.64%)	0	0	0	1	0	0	1	0
17.2.3	hormone metabolism.auxin.induced-regulated-responsive-activated	2 (0.64%)	0	0	0	1	0	0	1	0
17.5.2	hormone metabolism.ethylene.signal transduction	2 (0.64%)	0	0	0	0	1	0	0	1
2.1	major CHO metabolism.synthesis	2 (0.64%)	0	0	0	1	0	0	0	1
2.1.2	major CHO metabolism.synthesis.starch	2 (0.64%)	0	0	0	1	0	0	0	1
2.1.2.1	major CHO metabolism.synthesis.starch.AGPase	2 (0.64%)	0	0	0	1	0	0	0	1
26.3	misc.gluco-, galacto- and mannosidases	2 (0.64%)	0	2	0	0	0	0	0	0
26.3.2	misc.gluco-, galacto- and mannosidases.beta-galactosidase	2 (0.64%)	0	2	0	0	0	0	0	0
27.1.1	RNA.processing.splicing	2 (0.64%)	0	0	1	0	0	0	1	0
27.1.2	RNA.processing.RNA helicase	2 (0.64%)	0	2	0	0	0	0	0	0
27.3.35	RNA.regulation of transcription.bZIP transcription factor family	2 (0.64%)	0	0	0	2	0	0	0	0
27.3.63	RNA.regulation of transcription.PHD finger transcription factor	2 (0.64%)	0	0	0	0	1	1	0	0
30.2.11	signalling.receptor kinases.leucine rich repeat XI	2 (0.64%)	0	0	0	2	0	0	0	0
30.5	signalling.G-proteins	2 (0.64%)	0	1	0	0	1	0	0	0
31.4	cell.vesicle transport	2 (0.64%)	0	0	0	1	0	1	0	0
34.9	transport.metabolite transporters at the mitochondrial membrane	2 (0.64%)	1	0	0	0	0	1	0	0
1	PS	1 (0.32%)	0	0	1	0	0	0	0	0
1.1	PS.lightreaction	1 (0.32%)	0	0	1	0	0	0	0	0
1.1.2	PS.lightreaction.photosystem I	1 (0.32%)	0	0	1	0	0	0	0	0
1.1.2.2	PS.lightreaction.photosystem I.PSI polypeptide subunits	1 (0.32%)	0	0	1	0	0	0	0	0
10.6	cell wall.degradation	1 (0.32%)	0	0	0	0	1	0	0	0
10.6.3	cell wall.degradation.pectate lyases and polygalacturonases	1 (0.32%)	0	0	0	0	1	0	0	0
11	lipid metabolism	1 (0.32%)	0	0	0	1	0	0	0	0
11.9	lipid metabolism.lipid degradation	1 (0.32%)	0	0	0	1	0	0	0	0
11.9.4	lipid metabolism.lipid degradation.beta-oxidation	1 (0.32%)	0	0	0	1	0	0	0	0
11.9.4.13	lipid metabolism.lipid degradation.beta-oxidation.acyl CoA reductase	1 (0.32%)	0	0	0	1	0	0	0	0
15	metal handling	1 (0.32%)	0	0	0	1	0	0	0	0
15.2	metal handling.binding, chelation and storage	1 (0.32%)	0	0	0	1	0	0	0	0
17.4	hormone metabolism.cytokinin	1 (0.32%)	0	0	0	0	1	0	0	0
17.4.1	hormone metabolism.cytokinin.synthesis-degradation	1 (0.32%)	0	0	0	0	1	0	0	0
17.5.1	hormone metabolism.ethylene.synthesis-degradation	1 (0.32%)	0	0	1	0	0	0	0	0
20	stress	1 (0.32%)	1	0	0	0	0	0	0	0
20.1	stress.biotic	1 (0.32%)	1	0	0	0	0	0	0	0
26.19	misc.plastocyanin-like	1 (0.32%)	0	0	0	1	0	0	0	0
27.2	RNA.transcription	1 (0.32%)	0	0	0	0	0	0	0	1
27.3.15	RNA.regulation of transcription.CCAAT box binding factor family, HAP3	1 (0.32%)	0	0	0	0	1	0	0	0
27.3.17	RNA.regulation of transcription.CPP(Zn),CPP1-related transcription factor family	1 (0.32%)	0	1	0	0	0	0	0	0
27.3.22	RNA.regulation of transcription.HB,Homeobox transcription factor family	1 (0.32%)	0	1	0	0	0	0	0	0
27.3.29	RNA.regulation of transcription.TCP transcription factor family	1 (0.32%)	0	0	0	0	1	0	0	0
27.3.30	RNA.regulation of transcription.Trihelix, Triple-Helix transcription factor family	1 (0.32%)	0	0	0	0	1	0	0	0
27.3.32	RNA.regulation of transcription.WRKY domain transcription factor family	1 (0.32%)	0	0	1	0	0	0	0	0
27.3.37	RNA.regulation of transcription.AS2,Lateral Organ Boundaries Gene Family	1 (0.32%)	0	0	0	0	1	0	0	0
27.3.44	RNA.regulation of transcription.Chromatin Remodeling Factors	1 (0.32%)	0	0	0	1	0	0	0	0
27.3.6	RNA.regulation of transcription.bHLH,Basic Helix-Loop-Helix family	1 (0.32%)	0	0	0	0	0	0	0	1
27.3.62	RNA.regulation of transcription.Nucleosome/chromatin assembly factor group	1 (0.32%)	0	0	1	0	0	0	0	0
27.3.67	RNA.regulation of transcription.putative transcription regulator	1 (0.32%)	0	0	0	0	0	0	1	0
28.1.3	DNA.synthesis/chromatin structure.histone	1 (0.32%)	0	0	0	0	1	0	0	0
29.1	protein.aa activation	1 (0.32%)	0	0	0	0	0	1	0	0
29.1.30	protein.aa activation.pseudouridylate synthase	1 (0.32%)	0	0	0	0	0	1	0	0
29.2	protein.synthesis	1 (0.32%)	0	0	0	0	0	0	0	1
29.2.1.2.1.13	protein.synthesis.ribosomal protein.eukaryotic.40S subunit.S13	1 (0.32%)	0	1	0	0	0	0	0	0
29.2.2	protein.synthesis.ribosome biogenesis	1 (0.32%)	0	0	0	0	0	0	0	1
29.2.2.3	protein.synthesis.ribosome biogenesis.Pre-rRNA processing and modifications	1 (0.32%)	0	0	0	0	0	0	0	1
29.2.2.3.3	protein.synthesis.ribosome biogenesis.Pre-rRNA processing and modifications.methylotransferases	1 (0.32%)	0	0	0	0	0	0	0	1
29.4.1.59	protein.postranslational modification.kinase.receptor like cytoplasmatic kinase IX	1 (0.32%)	0	0	0	0	1	0	0	0
29.5	protein.degradation	1 (0.32%)	0	0	0	0	1	0	0	0
29.5.11.4.3.2	protein.degradation.ubiquitin.E3.SCF.FBOX	1 (0.32%)	0	0	0	1	0	0	0	0
29.5.3	protein.degradation.cysteine protease	1 (0.32%)	0	0	0	0	1	0	0	0
30.4	signalling.phosphinositides	1 (0.32%)	0	0	0	0	1	0	0	0
30.4.1	signalling.phosphinositides.phosphatidylinositol-4-phosphate 5-kinase	1 (0.32%)	0	0	0	0	1	0	0	0
30.99	signalling.unspecified	1 (0.32%)	0	0	0	0	1	0	0	0
31.3	cell.cycle	1 (0.32%)	0	0	0	0	1	0	0	0
34.99	transport.misc	1 (0.32%)	0	1	0	0	0	0	0	0