Gene Ontology terms associated with a binding site

Binding site
Motif_415
Name
RBCSGBOXPS
Description
rbcS G-box; 5'upstream region (-211) of pea rbcS gene; binding with trans factor GBF (CG-1); Light-responsiveness
#Associated genes
10
#Associated GO terms
257
 
Biological Process
Molecular Function
Cellular Component






Cellular Component (back to top)

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GODescription#Associated genes ath bra cme egr gma ptr ppe sly stu vvi
GO:0005623cell5 (50.00%)0000121001
GO:0044464cell part5 (50.00%)0000121001
GO:0005622intracellular5 (50.00%)0000121001
GO:0043231intracellular membrane-bounded organelle5 (50.00%)0000121001
GO:0043229intracellular organelle5 (50.00%)0000121001
GO:0044424intracellular part5 (50.00%)0000121001
GO:0043227membrane-bounded organelle5 (50.00%)0000121001
GO:0043226organelle5 (50.00%)0000121001
GO:0005737cytoplasm4 (40.00%)0000120001
GO:0044444cytoplasmic part4 (40.00%)0000120001
GO:0071944cell periphery3 (30.00%)0000020001
GO:0009986cell surface2 (20.00%)0000010001
GO:0009898cytoplasmic side of plasma membrane2 (20.00%)0000010001
GO:0016020membrane2 (20.00%)0000010001
GO:0044425membrane part2 (20.00%)0000010001
GO:0005634nucleus2 (20.00%)0000101000
GO:0005886plasma membrane2 (20.00%)0000010001
GO:0044459plasma membrane part2 (20.00%)0000010001
GO:0005773vacuole2 (20.00%)0000010001
GO:0048046apoplast1 (10.00%)0000010000
GO:0030054cell junction1 (10.00%)0000010000
GO:0005618cell wall1 (10.00%)0000010000
GO:0005911cell-cell junction1 (10.00%)0000010000
GO:0009507chloroplast1 (10.00%)0000010000
GO:0005829cytosol1 (10.00%)0000100000
GO:0030312external encapsulating structure1 (10.00%)0000010000
GO:0005576extracellular region1 (10.00%)0000010000
GO:0009505plant-type cell wall1 (10.00%)0000010000
GO:0009506plasmodesma1 (10.00%)0000010000
GO:0009536plastid1 (10.00%)0000010000
GO:0055044symplast1 (10.00%)0000010000

Molecular Function (back to top)

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GODescription#Associated genes ath bra cme egr gma ptr ppe sly stu vvi
GO:0003824catalytic activity5 (50.00%)0000130001
GO:0005488binding4 (40.00%)0000021001
GO:1901363heterocyclic compound binding3 (30.00%)0000011001
GO:0097159organic cyclic compound binding3 (30.00%)0000011001
GO:0005515protein binding3 (30.00%)0000011001
GO:0005524ATP binding2 (20.00%)0000010001
GO:0010181FMN binding2 (20.00%)0000010001
GO:0030554adenyl nucleotide binding2 (20.00%)0000010001
GO:0032559adenyl ribonucleotide binding2 (20.00%)0000010001
GO:0043168anion binding2 (20.00%)0000010001
GO:0009882blue light photoreceptor activity2 (20.00%)0000010001
GO:0097367carbohydrate derivative binding2 (20.00%)0000010001
GO:0050662coenzyme binding2 (20.00%)0000010001
GO:0048037cofactor binding2 (20.00%)0000010001
GO:0016787hydrolase activity2 (20.00%)0000110000
GO:0016798hydrolase activity, acting on glycosyl bonds2 (20.00%)0000110000
GO:0042802identical protein binding2 (20.00%)0000010001
GO:0043167ion binding2 (20.00%)0000010001
GO:0016301kinase activity2 (20.00%)0000010001
GO:0060089molecular transducer activity2 (20.00%)0000010001
GO:0001882nucleoside binding2 (20.00%)0000010001
GO:1901265nucleoside phosphate binding2 (20.00%)0000010001
GO:0000166nucleotide binding2 (20.00%)0000010001
GO:0000155phosphorelay sensor kinase activity2 (20.00%)0000010001
GO:0016773phosphotransferase activity, alcohol group as acceptor2 (20.00%)0000010001
GO:0016775phosphotransferase activity, nitrogenous group as acceptor2 (20.00%)0000010001
GO:0009881photoreceptor activity2 (20.00%)0000010001
GO:0004673protein histidine kinase activity2 (20.00%)0000010001
GO:0004672protein kinase activity2 (20.00%)0000010001
GO:0004674protein serine/threonine kinase activity2 (20.00%)0000010001
GO:0001883purine nucleoside binding2 (20.00%)0000010001
GO:0017076purine nucleotide binding2 (20.00%)0000010001
GO:0032550purine ribonucleoside binding2 (20.00%)0000010001
GO:0035639purine ribonucleoside triphosphate binding2 (20.00%)0000010001
GO:0032555purine ribonucleotide binding2 (20.00%)0000010001
GO:0004872receptor activity2 (20.00%)0000010001
GO:0032549ribonucleoside binding2 (20.00%)0000010001
GO:0032553ribonucleotide binding2 (20.00%)0000010001
GO:0004871signal transducer activity2 (20.00%)0000010001
GO:0038023signaling receptor activity2 (20.00%)0000010001
GO:0036094small molecule binding2 (20.00%)0000010001
GO:0016740transferase activity2 (20.00%)0000010001
GO:0016772transferase activity, transferring phosphorus-containing groups2 (20.00%)0000010001
GO:0003677DNA binding1 (10.00%)0000001000
GO:0046556alpha-N-arabinofuranosidase activity1 (10.00%)0000010000
GO:0030246carbohydrate binding1 (10.00%)0000010000
GO:0008886glyceraldehyde-3-phosphate dehydrogenase (NADP+) (non-phosphorylating) activity1 (10.00%)0000010000
GO:0016799hydrolase activity, hydrolyzing N-glycosyl compounds1 (10.00%)0000100000
GO:0004553hydrolase activity, hydrolyzing O-glycosyl compounds1 (10.00%)0000010000
GO:0003676nucleic acid binding1 (10.00%)0000001000
GO:0001071nucleic acid binding transcription factor activity1 (10.00%)0000001000
GO:0016491oxidoreductase activity1 (10.00%)0000010000
GO:0016903oxidoreductase activity, acting on the aldehyde or oxo group of donors1 (10.00%)0000010000
GO:0016620oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor1 (10.00%)0000010000
GO:0043565sequence-specific DNA binding1 (10.00%)0000001000
GO:0003700sequence-specific DNA binding transcription factor activity1 (10.00%)0000001000
GO:0009044xylan 1,4-beta-xylosidase activity1 (10.00%)0000010000
GO:0080176xyloglucan 1,6-alpha-xylosidase activity1 (10.00%)0000010000

Biological Process (back to top)

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GODescription#Associated genes ath bra cme egr gma ptr ppe sly stu vvi
GO:0008152metabolic process6 (60.00%)0000131001
GO:0044237cellular metabolic process5 (50.00%)0000121001
GO:0009987cellular process5 (50.00%)0000121001
GO:0071704organic substance metabolic process5 (50.00%)0000121001
GO:0065007biological regulation4 (40.00%)0000111001
GO:0044260cellular macromolecule metabolic process4 (40.00%)0000021001
GO:0043170macromolecule metabolic process4 (40.00%)0000021001
GO:0044238primary metabolic process4 (40.00%)0000021001
GO:0050896response to stimulus4 (40.00%)0000021001
GO:0044699single-organism process4 (40.00%)0000021001
GO:0009058biosynthetic process3 (30.00%)0000111000
GO:0006725cellular aromatic compound metabolic process3 (30.00%)0000111000
GO:0044249cellular biosynthetic process3 (30.00%)0000111000
GO:0051716cellular response to stimulus3 (30.00%)0000011001
GO:0046483heterocycle metabolic process3 (30.00%)0000111000
GO:0006807nitrogen compound metabolic process3 (30.00%)0000111000
GO:0050789regulation of biological process3 (30.00%)0000011001
GO:0050794regulation of cellular process3 (30.00%)0000011001
GO:0044763single-organism cellular process3 (30.00%)0000011001
GO:0032774RNA biosynthetic process2 (20.00%)0000011000
GO:0016070RNA metabolic process2 (20.00%)0000011000
GO:0006820anion transport2 (20.00%)0000010001
GO:0019438aromatic compound biosynthetic process2 (20.00%)0000011000
GO:0006812cation transport2 (20.00%)0000010001
GO:0007154cell communication2 (20.00%)0000010001
GO:0016043cellular component organization2 (20.00%)0000010001
GO:0071840cellular component organization or biogenesis2 (20.00%)0000010001
GO:0051641cellular localization2 (20.00%)0000010001
GO:0034645cellular macromolecule biosynthetic process2 (20.00%)0000011000
GO:0044271cellular nitrogen compound biosynthetic process2 (20.00%)0000011000
GO:0034641cellular nitrogen compound metabolic process2 (20.00%)0000011000
GO:0044267cellular protein metabolic process2 (20.00%)0000010001
GO:0006464cellular protein modification process2 (20.00%)0000010001
GO:0009904chloroplast accumulation movement2 (20.00%)0000010001
GO:0009903chloroplast avoidance movement2 (20.00%)0000010001
GO:0009658chloroplast organization2 (20.00%)0000010001
GO:0009902chloroplast relocation2 (20.00%)0000010001
GO:0051234establishment of localization2 (20.00%)0000010001
GO:0051649establishment of localization in cell2 (20.00%)0000010001
GO:0051656establishment of organelle localization2 (20.00%)0000010001
GO:0051667establishment of plastid localization2 (20.00%)0000010001
GO:0010467gene expression2 (20.00%)0000011000
GO:0018130heterocycle biosynthetic process2 (20.00%)0000011000
GO:0006818hydrogen transport2 (20.00%)0000010001
GO:0034220ion transmembrane transport2 (20.00%)0000010001
GO:0006811ion transport2 (20.00%)0000010001
GO:0051179localization2 (20.00%)0000010001
GO:0009059macromolecule biosynthetic process2 (20.00%)0000011000
GO:0043412macromolecule modification2 (20.00%)0000010001
GO:0015672monovalent inorganic cation transport2 (20.00%)0000010001
GO:0032501multicellular organismal process2 (20.00%)0000010001
GO:0010360negative regulation of anion channel activity2 (20.00%)0000010001
GO:0010362negative regulation of anion channel activity by blue light2 (20.00%)0000010001
GO:0048519negative regulation of biological process2 (20.00%)0000010001
GO:0032413negative regulation of ion transmembrane transporter activity2 (20.00%)0000010001
GO:0044092negative regulation of molecular function2 (20.00%)0000010001
GO:0051051negative regulation of transport2 (20.00%)0000010001
GO:0032410negative regulation of transporter activity2 (20.00%)0000010001
GO:0090304nucleic acid metabolic process2 (20.00%)0000011000
GO:0034654nucleobase-containing compound biosynthetic process2 (20.00%)0000011000
GO:0006139nucleobase-containing compound metabolic process2 (20.00%)0000011000
GO:0051640organelle localization2 (20.00%)0000010001
GO:0006996organelle organization2 (20.00%)0000010001
GO:1901362organic cyclic compound biosynthetic process2 (20.00%)0000011000
GO:1901360organic cyclic compound metabolic process2 (20.00%)0000011000
GO:1901576organic substance biosynthetic process2 (20.00%)0000011000
GO:0006796phosphate-containing compound metabolic process2 (20.00%)0000010001
GO:0000160phosphorelay signal transduction system2 (20.00%)0000010001
GO:0006793phosphorus metabolic process2 (20.00%)0000010001
GO:0016310phosphorylation2 (20.00%)0000010001
GO:0009638phototropism2 (20.00%)0000010001
GO:0051644plastid localization2 (20.00%)0000010001
GO:0009657plastid organization2 (20.00%)0000010001
GO:0046777protein autophosphorylation2 (20.00%)0000010001
GO:0019538protein metabolic process2 (20.00%)0000010001
GO:0036211protein modification process2 (20.00%)0000010001
GO:0006468protein phosphorylation2 (20.00%)0000010001
GO:0015992proton transport2 (20.00%)0000010001
GO:2001141regulation of RNA biosynthetic process2 (20.00%)0000011000
GO:0051252regulation of RNA metabolic process2 (20.00%)0000011000
GO:0010359regulation of anion channel activity2 (20.00%)0000010001
GO:0010361regulation of anion channel activity by blue light2 (20.00%)0000010001
GO:0044070regulation of anion transport2 (20.00%)0000010001
GO:0009889regulation of biosynthetic process2 (20.00%)0000011000
GO:0031326regulation of cellular biosynthetic process2 (20.00%)0000011000
GO:2000112regulation of cellular macromolecule biosynthetic process2 (20.00%)0000011000
GO:0031323regulation of cellular metabolic process2 (20.00%)0000011000
GO:0010468regulation of gene expression2 (20.00%)0000011000
GO:0034765regulation of ion transmembrane transport2 (20.00%)0000010001
GO:0032412regulation of ion transmembrane transporter activity2 (20.00%)0000010001
GO:0043269regulation of ion transport2 (20.00%)0000010001
GO:0032879regulation of localization2 (20.00%)0000010001
GO:0010556regulation of macromolecule biosynthetic process2 (20.00%)0000011000
GO:0060255regulation of macromolecule metabolic process2 (20.00%)0000011000
GO:0019222regulation of metabolic process2 (20.00%)0000011000
GO:0065009regulation of molecular function2 (20.00%)0000010001
GO:0051171regulation of nitrogen compound metabolic process2 (20.00%)0000011000
GO:0019219regulation of nucleobase-containing compound metabolic process2 (20.00%)0000011000
GO:0080090regulation of primary metabolic process2 (20.00%)0000011000
GO:0010155regulation of proton transport2 (20.00%)0000010001
GO:0010119regulation of stomatal movement2 (20.00%)0000010001
GO:0006355regulation of transcription, DNA-dependent2 (20.00%)0000011000
GO:0034762regulation of transmembrane transport2 (20.00%)0000010001
GO:0022898regulation of transmembrane transporter activity2 (20.00%)0000010001
GO:0051049regulation of transport2 (20.00%)0000010001
GO:0032409regulation of transporter activity2 (20.00%)0000010001
GO:0009628response to abiotic stimulus2 (20.00%)0000010001
GO:0009637response to blue light2 (20.00%)0000010001
GO:0042221response to chemical2 (20.00%)0000011000
GO:0009605response to external stimulus2 (20.00%)0000010001
GO:0009416response to light stimulus2 (20.00%)0000010001
GO:0009314response to radiation2 (20.00%)0000010001
GO:0007165signal transduction2 (20.00%)0000010001
GO:0023052signaling2 (20.00%)0000010001
GO:0044700single organism signaling2 (20.00%)0000010001
GO:0044707single-multicellular organism process2 (20.00%)0000010001
GO:0044765single-organism transport2 (20.00%)0000010001
GO:0010118stomatal movement2 (20.00%)0000010001
GO:0006351transcription, DNA-templated2 (20.00%)0000011000
GO:0055085transmembrane transport2 (20.00%)0000010001
GO:0006810transport2 (20.00%)0000010001
GO:0009606tropism2 (20.00%)0000010001
GO:0009308amine metabolic process1 (10.00%)0000100000
GO:0016052carbohydrate catabolic process1 (10.00%)0000010000
GO:0005975carbohydrate metabolic process1 (10.00%)0000010000
GO:0009056catabolic process1 (10.00%)0000010000
GO:0044036cell wall macromolecule metabolic process1 (10.00%)0000010000
GO:0071554cell wall organization or biogenesis1 (10.00%)0000010000
GO:0010383cell wall polysaccharide metabolic process1 (10.00%)0000010000
GO:0044262cellular carbohydrate metabolic process1 (10.00%)0000010000
GO:0006073cellular glucan metabolic process1 (10.00%)0000010000
GO:0034754cellular hormone metabolic process1 (10.00%)0000100000
GO:0044264cellular polysaccharide metabolic process1 (10.00%)0000010000
GO:0070887cellular response to chemical stimulus1 (10.00%)0000001000
GO:0071495cellular response to endogenous stimulus1 (10.00%)0000001000
GO:0071369cellular response to ethylene stimulus1 (10.00%)0000001000
GO:0032870cellular response to hormone stimulus1 (10.00%)0000001000
GO:0071310cellular response to organic substance1 (10.00%)0000001000
GO:0009691cytokinin biosynthetic process1 (10.00%)0000100000
GO:0009690cytokinin metabolic process1 (10.00%)0000100000
GO:0009593detection of chemical stimulus1 (10.00%)0000001000
GO:0009726detection of endogenous stimulus1 (10.00%)0000001000
GO:0009727detection of ethylene stimulus1 (10.00%)0000001000
GO:0009720detection of hormone stimulus1 (10.00%)0000001000
GO:0051606detection of stimulus1 (10.00%)0000001000
GO:0044042glucan metabolic process1 (10.00%)0000010000
GO:0010410hemicellulose metabolic process1 (10.00%)0000010000
GO:0042446hormone biosynthetic process1 (10.00%)0000100000
GO:0042445hormone metabolic process1 (10.00%)0000100000
GO:0009057macromolecule catabolic process1 (10.00%)0000010000
GO:1901575organic substance catabolic process1 (10.00%)0000010000
GO:1901564organonitrogen compound metabolic process1 (10.00%)0000100000
GO:0055114oxidation-reduction process1 (10.00%)0000010000
GO:0000272polysaccharide catabolic process1 (10.00%)0000010000
GO:0005976polysaccharide metabolic process1 (10.00%)0000010000
GO:0065008regulation of biological quality1 (10.00%)0000100000
GO:0010817regulation of hormone levels1 (10.00%)0000100000
GO:0046686response to cadmium ion1 (10.00%)0000010000
GO:0009719response to endogenous stimulus1 (10.00%)0000001000
GO:0009723response to ethylene1 (10.00%)0000001000
GO:0009725response to hormone1 (10.00%)0000001000
GO:0010035response to inorganic substance1 (10.00%)0000010000
GO:0010038response to metal ion1 (10.00%)0000010000
GO:0010033response to organic substance1 (10.00%)0000001000
GO:0044710single-organism metabolic process1 (10.00%)0000010000
GO:0045493xylan catabolic process1 (10.00%)0000010000
GO:0045491xylan metabolic process1 (10.00%)0000010000
GO:0010411xyloglucan metabolic process1 (10.00%)0000010000