PLAZA 3.0 Dicots : Binding Sites

Gene Ontology terms associated with a binding site

Binding site: Motif_405
Name: DREB2A;DREB1A
Description: Identification of cold-inducible downstream genes of the Arabidopsis DREB1A/CBF3 transcriptional factor using two microarray systems. Interaction between two cis-acting elements, ABRE and DRE, in ABA-dependent expression of Arabidopsis rd29A gene in response to dehydration and high-salinity stresses

#Associated genes: 13
#Associated GO terms: 176

Biological Process
Molecular Function
Cellular Component

Show species without binding site experiments

Molecular Function (back to top)

Click table-header(s) to enable sorting

GO	Description	#Associated genes	cme	egr	ptr	ppe	vvi
GO:0003824	catalytic activity	6 (46.15%)	1	1	2	1	1
GO:0005488	binding	5 (38.46%)	0	1	3	1	0
GO:0004180	carboxypeptidase activity	3 (23.08%)	1	0	1	1	0
GO:0008238	exopeptidase activity	3 (23.08%)	1	0	1	1	0
GO:0016787	hydrolase activity	3 (23.08%)	1	0	1	1	0
GO:0008233	peptidase activity	3 (23.08%)	1	0	1	1	0
GO:0070011	peptidase activity, acting on L-amino acid peptides	3 (23.08%)	1	0	1	1	0
GO:0005515	protein binding	3 (23.08%)	0	0	3	0	0
GO:0017171	serine hydrolase activity	3 (23.08%)	1	0	1	1	0
GO:0004185	serine-type carboxypeptidase activity	3 (23.08%)	1	0	1	1	0
GO:0070008	serine-type exopeptidase activity	3 (23.08%)	1	0	1	1	0
GO:0008236	serine-type peptidase activity	3 (23.08%)	1	0	1	1	0
GO:0043169	cation binding	2 (15.38%)	0	0	1	1	0
GO:1901363	heterocyclic compound binding	2 (15.38%)	0	1	0	1	0
GO:0043167	ion binding	2 (15.38%)	0	0	1	1	0
GO:0046872	metal ion binding	2 (15.38%)	0	0	1	1	0
GO:0003676	nucleic acid binding	2 (15.38%)	0	1	0	1	0
GO:0097159	organic cyclic compound binding	2 (15.38%)	0	1	0	1	0
GO:0052634	C-19 gibberellin 2-beta-dioxygenase activity	1 (7.69%)	0	0	0	0	1
GO:0052635	C-20 gibberellin 2-beta-dioxygenase activity	1 (7.69%)	0	0	0	0	1
GO:0008171	O-methyltransferase activity	1 (7.69%)	0	0	1	0	0
GO:0008757	S-adenosylmethionine-dependent methyltransferase activity	1 (7.69%)	0	0	1	0	0
GO:0010340	carboxyl-O-methyltransferase activity	1 (7.69%)	0	0	1	0	0
GO:0051213	dioxygenase activity	1 (7.69%)	0	0	0	0	1
GO:0045543	gibberellin 2-beta-dioxygenase activity	1 (7.69%)	0	0	0	0	1
GO:0010341	gibberellin carboxyl-O-methyltransferase activity	1 (7.69%)	0	0	1	0	0
GO:0042802	identical protein binding	1 (7.69%)	0	0	1	0	0
GO:0051749	indole acetic acid carboxyl methyltransferase activity	1 (7.69%)	0	0	1	0	0
GO:0000287	magnesium ion binding	1 (7.69%)	0	0	1	0	0
GO:0008168	methyltransferase activity	1 (7.69%)	0	0	1	0	0
GO:1901265	nucleoside phosphate binding	1 (7.69%)	0	0	0	1	0
GO:0000166	nucleotide binding	1 (7.69%)	0	0	0	1	0
GO:0016491	oxidoreductase activity	1 (7.69%)	0	0	0	0	1
GO:0016705	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	1 (7.69%)	0	0	0	0	1
GO:0016706	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	1 (7.69%)	0	0	0	0	1
GO:0046983	protein dimerization activity	1 (7.69%)	0	0	1	0	0
GO:0036094	small molecule binding	1 (7.69%)	0	0	0	1	0
GO:0016740	transferase activity	1 (7.69%)	0	0	1	0	0
GO:0016741	transferase activity, transferring one-carbon groups	1 (7.69%)	0	0	1	0	0
GO:0046914	transition metal ion binding	1 (7.69%)	0	0	0	1	0
GO:0008270	zinc ion binding	1 (7.69%)	0	0	0	1	0

Biological Process (back to top)

Click table-header(s) to enable sorting

GO	Description	#Associated genes	cme	egr	ptr	ppe	vvi
GO:0008152	metabolic process	6 (46.15%)	1	1	2	1	1
GO:0071704	organic substance metabolic process	6 (46.15%)	1	1	2	1	1
GO:0044238	primary metabolic process	6 (46.15%)	1	1	2	1	1
GO:0043170	macromolecule metabolic process	5 (38.46%)	1	1	2	1	0
GO:0009987	cellular process	4 (30.77%)	0	2	1	0	1
GO:0065007	biological regulation	3 (23.08%)	0	1	2	0	0
GO:0044237	cellular metabolic process	3 (23.08%)	0	1	1	0	1
GO:0019538	protein metabolic process	3 (23.08%)	1	0	1	1	0
GO:0006508	proteolysis	3 (23.08%)	1	0	1	1	0
GO:0044699	single-organism process	3 (23.08%)	0	1	1	0	1
GO:0006725	cellular aromatic compound metabolic process	2 (15.38%)	0	1	1	0	0
GO:0044260	cellular macromolecule metabolic process	2 (15.38%)	0	1	1	0	0
GO:0034641	cellular nitrogen compound metabolic process	2 (15.38%)	0	1	1	0	0
GO:0032502	developmental process	2 (15.38%)	0	1	1	0	0
GO:0046483	heterocycle metabolic process	2 (15.38%)	0	1	1	0	0
GO:0007275	multicellular organismal development	2 (15.38%)	0	1	1	0	0
GO:0032501	multicellular organismal process	2 (15.38%)	0	1	1	0	0
GO:0006807	nitrogen compound metabolic process	2 (15.38%)	0	1	1	0	0
GO:0090304	nucleic acid metabolic process	2 (15.38%)	0	1	1	0	0
GO:0006139	nucleobase-containing compound metabolic process	2 (15.38%)	0	1	1	0	0
GO:1901360	organic cyclic compound metabolic process	2 (15.38%)	0	1	1	0	0
GO:0065008	regulation of biological quality	2 (15.38%)	0	1	1	0	0
GO:0050896	response to stimulus	2 (15.38%)	0	1	1	0	0
GO:0044707	single-multicellular organism process	2 (15.38%)	0	1	1	0	0
GO:0044767	single-organism developmental process	2 (15.38%)	0	1	1	0	0
GO:0015074	DNA integration	1 (7.69%)	0	1	0	0	0
GO:0006259	DNA metabolic process	1 (7.69%)	0	1	0	0	0
GO:0032774	RNA biosynthetic process	1 (7.69%)	0	0	1	0	0
GO:0016070	RNA metabolic process	1 (7.69%)	0	0	1	0	0
GO:0009943	adaxial/abaxial axis specification	1 (7.69%)	0	0	1	0	0
GO:0009955	adaxial/abaxial pattern specification	1 (7.69%)	0	0	1	0	0
GO:0048856	anatomical structure development	1 (7.69%)	0	1	0	0	0
GO:0019438	aromatic compound biosynthetic process	1 (7.69%)	0	0	1	0	0
GO:0010252	auxin homeostasis	1 (7.69%)	0	0	1	0	0
GO:0009798	axis specification	1 (7.69%)	0	0	1	0	0
GO:0009058	biosynthetic process	1 (7.69%)	0	0	1	0	0
GO:0019752	carboxylic acid metabolic process	1 (7.69%)	0	0	0	0	1
GO:0044249	cellular biosynthetic process	1 (7.69%)	0	0	1	0	0
GO:0044085	cellular component biogenesis	1 (7.69%)	0	1	0	0	0
GO:0071840	cellular component organization or biogenesis	1 (7.69%)	0	1	0	0	0
GO:0044255	cellular lipid metabolic process	1 (7.69%)	0	0	0	0	1
GO:0034645	cellular macromolecule biosynthetic process	1 (7.69%)	0	0	1	0	0
GO:0044271	cellular nitrogen compound biosynthetic process	1 (7.69%)	0	0	1	0	0
GO:0048610	cellular process involved in reproduction	1 (7.69%)	0	1	0	0	0
GO:0048878	chemical homeostasis	1 (7.69%)	0	0	1	0	0
GO:0003006	developmental process involved in reproduction	1 (7.69%)	0	1	0	0	0
GO:0016101	diterpenoid metabolic process	1 (7.69%)	0	0	0	0	1
GO:0010154	fruit development	1 (7.69%)	0	1	0	0	0
GO:0010467	gene expression	1 (7.69%)	0	0	1	0	0
GO:0009685	gibberellin metabolic process	1 (7.69%)	0	0	0	0	1
GO:0018130	heterocycle biosynthetic process	1 (7.69%)	0	0	1	0	0
GO:0042592	homeostatic process	1 (7.69%)	0	0	1	0	0
GO:0006720	isoprenoid metabolic process	1 (7.69%)	0	0	0	0	1
GO:0010876	lipid localization	1 (7.69%)	0	1	0	0	0
GO:0006629	lipid metabolic process	1 (7.69%)	0	0	0	0	1
GO:0019915	lipid storage	1 (7.69%)	0	1	0	0	0
GO:0051179	localization	1 (7.69%)	0	1	0	0	0
GO:0009059	macromolecule biosynthetic process	1 (7.69%)	0	0	1	0	0
GO:0033036	macromolecule localization	1 (7.69%)	0	1	0	0	0
GO:0051235	maintenance of location	1 (7.69%)	0	1	0	0	0
GO:0034654	nucleobase-containing compound biosynthetic process	1 (7.69%)	0	0	1	0	0
GO:0006082	organic acid metabolic process	1 (7.69%)	0	0	0	0	1
GO:1901362	organic cyclic compound biosynthetic process	1 (7.69%)	0	0	1	0	0
GO:1901576	organic substance biosynthetic process	1 (7.69%)	0	0	1	0	0
GO:0055114	oxidation-reduction process	1 (7.69%)	0	0	0	0	1
GO:0043436	oxoacid metabolic process	1 (7.69%)	0	0	0	0	1
GO:0007389	pattern specification process	1 (7.69%)	0	0	1	0	0
GO:0009944	polarity specification of adaxial/abaxial axis	1 (7.69%)	0	0	1	0	0
GO:0009791	post-embryonic development	1 (7.69%)	0	1	0	0	0
GO:0003002	regionalization	1 (7.69%)	0	0	1	0	0
GO:2001141	regulation of RNA biosynthetic process	1 (7.69%)	0	0	1	0	0
GO:0051252	regulation of RNA metabolic process	1 (7.69%)	0	0	1	0	0
GO:0050789	regulation of biological process	1 (7.69%)	0	0	1	0	0
GO:0009889	regulation of biosynthetic process	1 (7.69%)	0	0	1	0	0
GO:0031326	regulation of cellular biosynthetic process	1 (7.69%)	0	0	1	0	0
GO:2000112	regulation of cellular macromolecule biosynthetic process	1 (7.69%)	0	0	1	0	0
GO:0031323	regulation of cellular metabolic process	1 (7.69%)	0	0	1	0	0
GO:0050794	regulation of cellular process	1 (7.69%)	0	0	1	0	0
GO:0010468	regulation of gene expression	1 (7.69%)	0	0	1	0	0
GO:0010556	regulation of macromolecule biosynthetic process	1 (7.69%)	0	0	1	0	0
GO:0060255	regulation of macromolecule metabolic process	1 (7.69%)	0	0	1	0	0
GO:0019222	regulation of metabolic process	1 (7.69%)	0	0	1	0	0
GO:0051171	regulation of nitrogen compound metabolic process	1 (7.69%)	0	0	1	0	0
GO:0019219	regulation of nucleobase-containing compound metabolic process	1 (7.69%)	0	0	1	0	0
GO:0080090	regulation of primary metabolic process	1 (7.69%)	0	0	1	0	0
GO:0006355	regulation of transcription, DNA-dependent	1 (7.69%)	0	0	1	0	0
GO:0000003	reproduction	1 (7.69%)	0	1	0	0	0
GO:0022414	reproductive process	1 (7.69%)	0	1	0	0	0
GO:0048608	reproductive structure development	1 (7.69%)	0	1	0	0	0
GO:0061458	reproductive system development	1 (7.69%)	0	1	0	0	0
GO:0009628	response to abiotic stimulus	1 (7.69%)	0	1	0	0	0
GO:0009733	response to auxin	1 (7.69%)	0	0	1	0	0
GO:0042221	response to chemical	1 (7.69%)	0	0	1	0	0
GO:0009409	response to cold	1 (7.69%)	0	1	0	0	0
GO:0009719	response to endogenous stimulus	1 (7.69%)	0	0	1	0	0
GO:0050826	response to freezing	1 (7.69%)	0	1	0	0	0
GO:0009725	response to hormone	1 (7.69%)	0	0	1	0	0
GO:0010033	response to organic substance	1 (7.69%)	0	0	1	0	0
GO:0006950	response to stress	1 (7.69%)	0	1	0	0	0
GO:0009266	response to temperature stimulus	1 (7.69%)	0	1	0	0	0
GO:0048316	seed development	1 (7.69%)	0	1	0	0	0
GO:0009845	seed germination	1 (7.69%)	0	1	0	0	0
GO:0010344	seed oilbody biogenesis	1 (7.69%)	0	1	0	0	0
GO:0090351	seedling development	1 (7.69%)	0	1	0	0	0
GO:0019953	sexual reproduction	1 (7.69%)	0	1	0	0	0
GO:0044702	single organism reproductive process	1 (7.69%)	0	1	0	0	0
GO:0044763	single-organism cellular process	1 (7.69%)	0	0	0	0	1
GO:0044710	single-organism metabolic process	1 (7.69%)	0	0	0	0	1
GO:0044281	small molecule metabolic process	1 (7.69%)	0	0	0	0	1
GO:0065001	specification of axis polarity	1 (7.69%)	0	0	1	0	0
GO:0048731	system development	1 (7.69%)	0	1	0	0	0
GO:0006721	terpenoid metabolic process	1 (7.69%)	0	0	0	0	1
GO:0006351	transcription, DNA-templated	1 (7.69%)	0	0	1	0	0

Cellular Component (back to top)

Click table-header(s) to enable sorting

GO	Description	#Associated genes	egr	ptr	ppe
GO:0005623	cell	3 (23.08%)	1	1	1
GO:0044464	cell part	3 (23.08%)	1	1	1
GO:0005622	intracellular	2 (15.38%)	1	1	0
GO:0043231	intracellular membrane-bounded organelle	2 (15.38%)	1	1	0
GO:0043229	intracellular organelle	2 (15.38%)	1	1	0
GO:0044424	intracellular part	2 (15.38%)	1	1	0
GO:0043227	membrane-bounded organelle	2 (15.38%)	1	1	0
GO:0043226	organelle	2 (15.38%)	1	1	0
GO:0071944	cell periphery	1 (7.69%)	0	0	1
GO:0005618	cell wall	1 (7.69%)	0	0	1
GO:0005737	cytoplasm	1 (7.69%)	1	0	0
GO:0044444	cytoplasmic part	1 (7.69%)	1	0	0
GO:0030312	external encapsulating structure	1 (7.69%)	0	0	1
GO:0005576	extracellular region	1 (7.69%)	1	0	0
GO:0016021	integral to membrane	1 (7.69%)	1	0	0
GO:0031224	intrinsic to membrane	1 (7.69%)	1	0	0
GO:0005811	lipid particle	1 (7.69%)	1	0	0
GO:0016020	membrane	1 (7.69%)	1	0	0
GO:0044425	membrane part	1 (7.69%)	1	0	0
GO:0012511	monolayer-surrounded lipid storage body	1 (7.69%)	1	0	0
GO:0005634	nucleus	1 (7.69%)	0	1	0
GO:0009505	plant-type cell wall	1 (7.69%)	0	0	1