PLAZA 3.0 Dicots : Binding Sites

Gene Ontology terms associated with a binding site

Binding site: Motif_389
Name: BOXBPSAS1
Description: Box B in pea asparagine synthetase (AS1) gene; Found at -61; AS1 is negatively regulated by light; Box B binds with nuclear proteins

#Associated genes: 6
#Associated GO terms: 161

Biological Process
Molecular Function
Cellular Component

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Molecular Function (back to top)

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GO	Description	#Associated genes	gma	vvi
GO:0003824	catalytic activity	3 (50.00%)	2	1
GO:0016880	acid-ammonia (or amide) ligase activity	2 (33.33%)	2	0
GO:0016211	ammonia ligase activity	2 (33.33%)	2	0
GO:0004066	asparagine synthase (glutamine-hydrolyzing) activity	2 (33.33%)	2	0
GO:0004071	aspartate-ammonia ligase activity	2 (33.33%)	2	0
GO:0016884	carbon-nitrogen ligase activity, with glutamine as amido-N-donor	2 (33.33%)	2	0
GO:0016874	ligase activity	2 (33.33%)	2	0
GO:0016879	ligase activity, forming carbon-nitrogen bonds	2 (33.33%)	2	0
GO:0003677	DNA binding	1 (16.67%)	1	0
GO:0005488	binding	1 (16.67%)	1	0
GO:1901363	heterocyclic compound binding	1 (16.67%)	1	0
GO:0016787	hydrolase activity	1 (16.67%)	0	1
GO:0003676	nucleic acid binding	1 (16.67%)	1	0
GO:0097159	organic cyclic compound binding	1 (16.67%)	1	0
GO:0008565	protein transporter activity	1 (16.67%)	0	1
GO:0003735	structural constituent of ribosome	1 (16.67%)	0	1
GO:0005198	structural molecule activity	1 (16.67%)	0	1
GO:0022892	substrate-specific transporter activity	1 (16.67%)	0	1
GO:0005215	transporter activity	1 (16.67%)	0	1

Biological Process (back to top)

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GO	Description	#Associated genes	gma	vvi
GO:0009987	cellular process	5 (83.33%)	3	2
GO:0009058	biosynthetic process	4 (66.67%)	3	1
GO:0044249	cellular biosynthetic process	4 (66.67%)	3	1
GO:0044237	cellular metabolic process	4 (66.67%)	3	1
GO:0008152	metabolic process	4 (66.67%)	3	1
GO:1901576	organic substance biosynthetic process	4 (66.67%)	3	1
GO:0071704	organic substance metabolic process	4 (66.67%)	3	1
GO:0044238	primary metabolic process	4 (66.67%)	3	1
GO:0044271	cellular nitrogen compound biosynthetic process	3 (50.00%)	3	0
GO:0034641	cellular nitrogen compound metabolic process	3 (50.00%)	3	0
GO:0006807	nitrogen compound metabolic process	3 (50.00%)	3	0
GO:1901607	alpha-amino acid biosynthetic process	2 (33.33%)	2	0
GO:1901605	alpha-amino acid metabolic process	2 (33.33%)	2	0
GO:0043604	amide biosynthetic process	2 (33.33%)	2	0
GO:0006529	asparagine biosynthetic process	2 (33.33%)	2	0
GO:0006528	asparagine metabolic process	2 (33.33%)	2	0
GO:0009067	aspartate family amino acid biosynthetic process	2 (33.33%)	2	0
GO:0009066	aspartate family amino acid metabolic process	2 (33.33%)	2	0
GO:0046394	carboxylic acid biosynthetic process	2 (33.33%)	2	0
GO:0046395	carboxylic acid catabolic process	2 (33.33%)	2	0
GO:0019752	carboxylic acid metabolic process	2 (33.33%)	2	0
GO:0009056	catabolic process	2 (33.33%)	2	0
GO:0007154	cell communication	2 (33.33%)	2	0
GO:0043603	cellular amide metabolic process	2 (33.33%)	2	0
GO:0008652	cellular amino acid biosynthetic process	2 (33.33%)	2	0
GO:0009063	cellular amino acid catabolic process	2 (33.33%)	2	0
GO:0006520	cellular amino acid metabolic process	2 (33.33%)	2	0
GO:0044248	cellular catabolic process	2 (33.33%)	2	0
GO:0034645	cellular macromolecule biosynthetic process	2 (33.33%)	1	1
GO:0044260	cellular macromolecule metabolic process	2 (33.33%)	1	1
GO:0071496	cellular response to external stimulus	2 (33.33%)	2	0
GO:0031668	cellular response to extracellular stimulus	2 (33.33%)	2	0
GO:0031669	cellular response to nutrient levels	2 (33.33%)	2	0
GO:0009267	cellular response to starvation	2 (33.33%)	2	0
GO:0051716	cellular response to stimulus	2 (33.33%)	2	0
GO:0033554	cellular response to stress	2 (33.33%)	2	0
GO:0043617	cellular response to sucrose starvation	2 (33.33%)	2	0
GO:0010467	gene expression	2 (33.33%)	1	1
GO:0009059	macromolecule biosynthetic process	2 (33.33%)	1	1
GO:0043170	macromolecule metabolic process	2 (33.33%)	1	1
GO:0016053	organic acid biosynthetic process	2 (33.33%)	2	0
GO:0016054	organic acid catabolic process	2 (33.33%)	2	0
GO:0006082	organic acid metabolic process	2 (33.33%)	2	0
GO:1901575	organic substance catabolic process	2 (33.33%)	2	0
GO:1901566	organonitrogen compound biosynthetic process	2 (33.33%)	2	0
GO:1901565	organonitrogen compound catabolic process	2 (33.33%)	2	0
GO:1901564	organonitrogen compound metabolic process	2 (33.33%)	2	0
GO:0043436	oxoacid metabolic process	2 (33.33%)	2	0
GO:0009628	response to abiotic stimulus	2 (33.33%)	2	0
GO:0009646	response to absence of light	2 (33.33%)	2	0
GO:0009743	response to carbohydrate	2 (33.33%)	2	0
GO:0042221	response to chemical	2 (33.33%)	2	0
GO:0034285	response to disaccharide	2 (33.33%)	2	0
GO:0009605	response to external stimulus	2 (33.33%)	2	0
GO:0009991	response to extracellular stimulus	2 (33.33%)	2	0
GO:0009750	response to fructose	2 (33.33%)	2	0
GO:0009749	response to glucose	2 (33.33%)	2	0
GO:0009746	response to hexose	2 (33.33%)	2	0
GO:0009642	response to light intensity	2 (33.33%)	2	0
GO:0009416	response to light stimulus	2 (33.33%)	2	0
GO:0034284	response to monosaccharide	2 (33.33%)	2	0
GO:0031667	response to nutrient levels	2 (33.33%)	2	0
GO:0010033	response to organic substance	2 (33.33%)	2	0
GO:1901700	response to oxygen-containing compound	2 (33.33%)	2	0
GO:0009314	response to radiation	2 (33.33%)	2	0
GO:0042594	response to starvation	2 (33.33%)	2	0
GO:0050896	response to stimulus	2 (33.33%)	2	0
GO:0006950	response to stress	2 (33.33%)	2	0
GO:0009744	response to sucrose	2 (33.33%)	2	0
GO:0044711	single-organism biosynthetic process	2 (33.33%)	2	0
GO:0044712	single-organism catabolic process	2 (33.33%)	2	0
GO:0044763	single-organism cellular process	2 (33.33%)	2	0
GO:0044710	single-organism metabolic process	2 (33.33%)	2	0
GO:0044699	single-organism process	2 (33.33%)	2	0
GO:0044283	small molecule biosynthetic process	2 (33.33%)	2	0
GO:0044282	small molecule catabolic process	2 (33.33%)	2	0
GO:0044281	small molecule metabolic process	2 (33.33%)	2	0
GO:0032774	RNA biosynthetic process	1 (16.67%)	1	0
GO:0016070	RNA metabolic process	1 (16.67%)	1	0
GO:0019438	aromatic compound biosynthetic process	1 (16.67%)	1	0
GO:0006725	cellular aromatic compound metabolic process	1 (16.67%)	1	0
GO:0044267	cellular protein metabolic process	1 (16.67%)	0	1
GO:0051234	establishment of localization	1 (16.67%)	0	1
GO:0045184	establishment of protein localization	1 (16.67%)	0	1
GO:0018130	heterocycle biosynthetic process	1 (16.67%)	1	0
GO:0046483	heterocycle metabolic process	1 (16.67%)	1	0
GO:0051179	localization	1 (16.67%)	0	1
GO:0033036	macromolecule localization	1 (16.67%)	0	1
GO:0090304	nucleic acid metabolic process	1 (16.67%)	1	0
GO:0034654	nucleobase-containing compound biosynthetic process	1 (16.67%)	1	0
GO:0006139	nucleobase-containing compound metabolic process	1 (16.67%)	1	0
GO:1901362	organic cyclic compound biosynthetic process	1 (16.67%)	1	0
GO:1901360	organic cyclic compound metabolic process	1 (16.67%)	1	0
GO:0071702	organic substance transport	1 (16.67%)	0	1
GO:0008104	protein localization	1 (16.67%)	0	1
GO:0019538	protein metabolic process	1 (16.67%)	0	1
GO:0015031	protein transport	1 (16.67%)	0	1
GO:0006351	transcription, DNA-templated	1 (16.67%)	1	0
GO:0006412	translation	1 (16.67%)	0	1
GO:0006810	transport	1 (16.67%)	0	1

Cellular Component (back to top)

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GO	Description	#Associated genes	gma	vvi
GO:0005623	cell	6 (100.00%)	3	3
GO:0044464	cell part	6 (100.00%)	3	3
GO:0005622	intracellular	6 (100.00%)	3	3
GO:0044424	intracellular part	6 (100.00%)	3	3
GO:0005737	cytoplasm	5 (83.33%)	2	3
GO:0044444	cytoplasmic part	5 (83.33%)	2	3
GO:0043229	intracellular organelle	4 (66.67%)	1	3
GO:0043226	organelle	4 (66.67%)	1	3
GO:0005829	cytosol	3 (50.00%)	2	1
GO:0043231	intracellular membrane-bounded organelle	3 (50.00%)	1	2
GO:0044446	intracellular organelle part	3 (50.00%)	0	3
GO:0043227	membrane-bounded organelle	3 (50.00%)	1	2
GO:0044422	organelle part	3 (50.00%)	0	3
GO:0009507	chloroplast	2 (33.33%)	0	2
GO:0044434	chloroplast part	2 (33.33%)	0	2
GO:0009536	plastid	2 (33.33%)	0	2
GO:0044435	plastid part	2 (33.33%)	0	2
GO:0009941	chloroplast envelope	1 (16.67%)	0	1
GO:0009570	chloroplast stroma	1 (16.67%)	0	1
GO:0044445	cytosolic part	1 (16.67%)	0	1
GO:0022626	cytosolic ribosome	1 (16.67%)	0	1
GO:0022627	cytosolic small ribosomal subunit	1 (16.67%)	0	1
GO:0031975	envelope	1 (16.67%)	0	1
GO:0043232	intracellular non-membrane-bounded organelle	1 (16.67%)	0	1
GO:0032991	macromolecular complex	1 (16.67%)	0	1
GO:0016020	membrane	1 (16.67%)	0	1
GO:0005740	mitochondrial envelope	1 (16.67%)	0	1
GO:0005743	mitochondrial inner membrane	1 (16.67%)	0	1
GO:0031966	mitochondrial membrane	1 (16.67%)	0	1
GO:0044429	mitochondrial part	1 (16.67%)	0	1
GO:0005739	mitochondrion	1 (16.67%)	0	1
GO:0043228	non-membrane-bounded organelle	1 (16.67%)	0	1
GO:0005634	nucleus	1 (16.67%)	1	0
GO:0031967	organelle envelope	1 (16.67%)	0	1
GO:0019866	organelle inner membrane	1 (16.67%)	0	1
GO:0031090	organelle membrane	1 (16.67%)	0	1
GO:0009526	plastid envelope	1 (16.67%)	0	1
GO:0009532	plastid stroma	1 (16.67%)	0	1
GO:0030529	ribonucleoprotein complex	1 (16.67%)	0	1
GO:0044391	ribosomal subunit	1 (16.67%)	0	1
GO:0005840	ribosome	1 (16.67%)	0	1
GO:0015935	small ribosomal subunit	1 (16.67%)	0	1