PLAZA 3.0 Dicots : Binding Sites

MapMan terms associated with a binding site

Binding site: Motif_356
Name: S2FSORPL21
Description: S2F binding site (S2 site) in spinach RPL21 gene encoding the plastid ribosomal protein L21; S2 site (CATACAWW) is conserved in promoter region of many nuclear genes encoding plastid proteins; Leaf-specific, light-independent regulatory element; S2 site is related to but different from the light-responsive GT-1 binding site

#Associated genes: 103
#Associated MapMan terms: 67

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MapMan	Description	#Associated genes	ath	bra	egr	gma	ptr	ppe	sly	vvi
27	RNA	16 (15.53%)	0	1	0	7	1	6	0	1
1	PS	13 (12.62%)	0	2	3	2	4	0	0	2
27.3	RNA.regulation of transcription	9 (8.74%)	0	1	0	3	1	4	0	0
29	protein	9 (8.74%)	0	1	0	2	2	4	0	0
1.1	PS.lightreaction	8 (7.77%)	0	2	2	2	1	0	0	1
1.1.5	PS.lightreaction.other electron carrier (ox/red)	7 (6.80%)	0	1	2	2	1	0	0	1
29.4	protein.postranslational modification	7 (6.80%)	0	1	0	2	2	2	0	0
27.1	RNA.processing	6 (5.83%)	0	0	0	4	0	1	0	1
30	signalling	6 (5.83%)	2	0	1	1	0	0	0	2
1.1.5.2	PS.lightreaction.other electron carrier (ox/red).ferredoxin	5 (4.85%)	0	1	2	1	0	0	0	1
1.3	PS.calvin cycle	5 (4.85%)	0	0	1	0	3	0	0	1
1.3.4	PS.calvin cycle.GAP	5 (4.85%)	0	0	1	0	3	0	0	1
26	misc	4 (3.88%)	0	0	0	2	1	0	0	1
27.1.2	RNA.processing.RNA helicase	4 (3.88%)	0	0	0	2	0	1	0	1
33	development	3 (2.91%)	0	0	1	0	1	0	0	1
33.99	development.unspecified	3 (2.91%)	0	0	1	0	1	0	0	1
17	hormone metabolism	2 (1.94%)	0	0	0	0	1	0	0	1
17.5	hormone metabolism.ethylene	2 (1.94%)	0	0	0	0	1	0	0	1
20	stress	2 (1.94%)	1	1	0	0	0	0	0	0
21	redox	2 (1.94%)	0	0	0	0	1	1	0	0
21.5	redox.peroxiredoxin	2 (1.94%)	0	0	0	0	1	1	0	0
21.5.1	redox.peroxiredoxin.BAS1	2 (1.94%)	0	0	0	0	1	1	0	0
26.21	misc.protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	2 (1.94%)	0	0	0	2	0	0	0	0
27.1.1	RNA.processing.splicing	2 (1.94%)	0	0	0	2	0	0	0	0
27.3.99	RNA.regulation of transcription.unclassified	2 (1.94%)	0	0	0	2	0	0	0	0
28	DNA	2 (1.94%)	0	0	0	0	1	0	1	0
28.1	DNA.synthesis/chromatin structure	2 (1.94%)	0	0	0	0	1	0	1	0
29.4.1	protein.postranslational modification.kinase	2 (1.94%)	0	0	0	1	0	1	0	0
29.4.1.57	protein.postranslational modification.kinase.receptor like cytoplasmatic kinase VII	2 (1.94%)	0	0	0	1	0	1	0	0
29.5	protein.degradation	2 (1.94%)	0	0	0	0	0	2	0	0
30.2	signalling.receptor kinases	2 (1.94%)	1	0	0	1	0	0	0	0
30.5	signalling.G-proteins	2 (1.94%)	0	0	1	0	0	0	0	1
1.1.1	PS.lightreaction.photosystem II	1 (0.97%)	0	1	0	0	0	0	0	0
1.1.1.2	PS.lightreaction.photosystem II.PSII polypeptide subunits	1 (0.97%)	0	1	0	0	0	0	0	0
1.1.5.1	PS.lightreaction.other electron carrier (ox/red).plastocyanin	1 (0.97%)	0	0	0	0	1	0	0	0
1.1.5.3	PS.lightreaction.other electron carrier (ox/red).ferredoxin reductase	1 (0.97%)	0	0	0	1	0	0	0	0
6	gluconeogenesis / glyoxylate cycle	1 (0.97%)	0	0	0	0	1	0	0	0
10	cell wall	1 (0.97%)	0	0	0	0	1	0	0	0
10.8	cell wall.pectin*esterases	1 (0.97%)	0	0	0	0	1	0	0	0
10.8.1	cell wall.pectin*esterases.PME	1 (0.97%)	0	0	0	0	1	0	0	0
17.5.2	hormone metabolism.ethylene.signal transduction	1 (0.97%)	0	0	0	0	1	0	0	0
17.5.3	hormone metabolism.ethylene.induced-regulated-responsive-activated	1 (0.97%)	0	0	0	0	0	0	0	1
20.1	stress.biotic	1 (0.97%)	1	0	0	0	0	0	0	0
20.2	stress.abiotic	1 (0.97%)	0	1	0	0	0	0	0	0
20.2.1	stress.abiotic.heat	1 (0.97%)	0	1	0	0	0	0	0	0
23	nucleotide metabolism	1 (0.97%)	0	0	0	0	1	0	0	0
23.4	nucleotide metabolism.phosphotransfer and pyrophosphatases	1 (0.97%)	0	0	0	0	1	0	0	0
23.4.1	nucleotide metabolism.phosphotransfer and pyrophosphatases.adenylate kinase	1 (0.97%)	0	0	0	0	1	0	0	0
26.2	misc.UDP glucosyl and glucoronyl transferases	1 (0.97%)	0	0	0	0	1	0	0	0
26.9	misc.glutathione S transferases	1 (0.97%)	0	0	0	0	0	0	0	1
27.3.10	RNA.regulation of transcription.C2C2(Zn) YABBY family	1 (0.97%)	0	0	0	0	0	1	0	0
27.3.21	RNA.regulation of transcription.GRAS transcription factor family	1 (0.97%)	0	0	0	0	1	0	0	0
27.3.22	RNA.regulation of transcription.HB,Homeobox transcription factor family	1 (0.97%)	0	0	0	1	0	0	0	0
27.3.3	RNA.regulation of transcription.AP2/EREBP, APETALA2/Ethylene-responsive element binding protein family	1 (0.97%)	0	0	0	0	0	1	0	0
27.3.30	RNA.regulation of transcription.Trihelix, Triple-Helix transcription factor family	1 (0.97%)	0	0	0	0	0	1	0	0
27.3.62	RNA.regulation of transcription.Nucleosome/chromatin assembly factor group	1 (0.97%)	0	1	0	0	0	0	0	0
27.3.67	RNA.regulation of transcription.putative transcription regulator	1 (0.97%)	0	0	0	0	0	1	0	0
27.4	RNA.RNA binding	1 (0.97%)	0	0	0	0	0	1	0	0
28.1.3	DNA.synthesis/chromatin structure.histone	1 (0.97%)	0	0	0	0	0	0	1	0
29.5.11	protein.degradation.ubiquitin	1 (0.97%)	0	0	0	0	0	1	0	0
29.5.11.3	protein.degradation.ubiquitin.E2	1 (0.97%)	0	0	0	0	0	1	0	0
29.5.3	protein.degradation.cysteine protease	1 (0.97%)	0	0	0	0	0	1	0	0
30.2.17	signalling.receptor kinases.DUF 26	1 (0.97%)	0	0	0	1	0	0	0	0
30.2.20	signalling.receptor kinases.wheat LRK10 like	1 (0.97%)	1	0	0	0	0	0	0	0
6.2	gluconeogenesis / glyoxylate cycle.malate synthase	1 (0.97%)	0	0	0	0	1	0	0	0
30.3	signalling.calcium	1 (0.97%)	0	0	0	0	0	0	0	1
30.6	signalling.MAP kinases	1 (0.97%)	1	0	0	0	0	0	0	0