PLAZA 3.0 Dicots : Binding Sites

InterPro domains associated with a binding site

Binding site: Motif_306
Name: E2Fb
Description: Arabidopsis E2F1 binds a sequence present in the promoter of S-phase-regulated gene AtCDC6 and is a member of a multigene family with differential activities

#Associated genes: 138
#Associated InterPro terms: 136

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InterPro	Description	#Associated genes	ath	bra	cme	egr	gma	ptr	ppe	sly	stu	vvi
IPR027417	P-loop containing nucleoside triphosphate hydrolase	43 (31.16%)	2	7	4	2	6	10	3	3	3	3
IPR001208	Mini-chromosome maintenance, DNA-dependent ATPase	19 (13.77%)	1	3	3	1	2	3	2	1	1	2
IPR012340	Nucleic acid-binding, OB-fold	19 (13.77%)	1	3	3	1	2	3	2	1	1	2
IPR027925	MCM N-terminal domain	18 (13.04%)	1	3	3	0	2	3	2	1	1	2
IPR018525	Mini-chromosome maintenance, conserved site	17 (12.32%)	1	3	2	0	2	3	2	1	1	2
IPR015943	WD40/YVTN repeat-like-containing domain	17 (12.32%)	0	1	1	1	2	2	2	2	4	2
IPR001650	Helicase, C-terminal	16 (11.59%)	0	2	1	1	2	5	1	2	2	0
IPR014001	Helicase, superfamily 1/2, ATP-binding domain	16 (11.59%)	0	2	1	1	2	5	1	2	2	0
IPR000330	SNF2-related	16 (11.59%)	0	2	1	1	2	5	1	2	2	0
IPR001680	WD40 repeat	16 (11.59%)	0	1	1	1	2	2	1	2	4	2
IPR017986	WD40-repeat-containing domain	15 (10.87%)	0	1	1	1	2	1	1	2	4	2
IPR019775	WD40 repeat, conserved site	13 (9.42%)	0	1	1	1	2	1	1	1	3	2
IPR003593	AAA+ ATPase domain	11 (7.97%)	1	3	1	1	1	2	0	1	1	0
IPR009057	Homeodomain-like	11 (7.97%)	0	2	0	1	2	3	1	1	1	0
IPR015194	ISWI HAND domain	11 (7.97%)	0	2	0	1	2	3	1	1	1	0
IPR017884	SANT domain	11 (7.97%)	0	2	0	1	2	3	1	1	1	0
IPR001005	SANT/Myb domain	11 (7.97%)	0	2	0	1	2	3	1	1	1	0
IPR015195	SLIDE domain	11 (7.97%)	0	2	0	1	2	3	1	1	1	0
IPR008049	DNA replication licensing factor Mcm6	5 (3.62%)	0	1	0	0	2	1	0	0	0	1
IPR013083	Zinc finger, RING/FYVE/PHD-type	5 (3.62%)	1	1	1	0	0	1	1	0	0	0
IPR003959	ATPase, AAA-type, core	4 (2.90%)	1	1	0	0	1	1	0	0	0	0
IPR008048	DNA replication licensing factor Mcm	4 (2.90%)	0	0	0	0	0	2	1	0	0	1
IPR021151	GINS complex	4 (2.90%)	1	1	0	0	0	0	0	1	1	0
IPR007257	GINS complex, subunit Psf2	4 (2.90%)	1	1	0	0	0	0	0	1	1	0
IPR004039	Rubredoxin-type fold	4 (2.90%)	0	0	1	0	2	1	0	0	0	0
IPR002905	tRNA methyltransferase, Trm1	4 (2.90%)	0	1	1	0	0	0	0	1	1	0
IPR001025	Bromo adjacent homology (BAH) domain	3 (2.17%)	1	1	0	0	0	1	0	0	0	0
IPR020838	DBINO domain	3 (2.17%)	0	0	0	0	2	1	0	0	0	0
IPR007185	DNA polymerase alpha/epsilon, subunit B	3 (2.17%)	1	1	0	0	1	0	0	0	0	0
IPR008045	DNA replication licensing factor Mcm2	3 (2.17%)	1	0	1	0	0	0	1	0	0	0
IPR008046	DNA replication licensing factor Mcm3	3 (2.17%)	0	1	0	0	0	0	0	1	1	0
IPR001623	DnaJ domain	3 (2.17%)	0	0	0	0	0	2	0	0	0	1
IPR025718	Histone deacetylase complex subunit SAP30, Sin3 binding domain	3 (2.17%)	0	0	1	0	1	0	1	0	0	0
IPR024145	Histone deacetylase complex subunit SAP30/SAP30-like	3 (2.17%)	0	0	1	0	1	0	1	0	0	0
IPR009072	Histone-fold	3 (2.17%)	0	0	0	0	0	0	1	1	0	1
IPR020793	Origin recognition complex, subunit 1	3 (2.17%)	1	1	0	0	0	1	0	0	0	0
IPR022100	Protein of unknown function DUF3639	3 (2.17%)	0	0	1	0	0	0	1	0	1	0
IPR012923	Replication fork protection component Swi3	3 (2.17%)	0	0	0	0	0	0	0	1	1	1
IPR001878	Zinc finger, CCHC-type	3 (2.17%)	0	0	0	0	0	0	0	1	1	1
IPR011011	Zinc finger, FYVE/PHD-type	3 (2.17%)	1	1	0	0	0	1	0	0	0	0
IPR019787	Zinc finger, PHD-finger	3 (2.17%)	1	1	0	0	0	1	0	0	0	0
IPR001965	Zinc finger, PHD-type	3 (2.17%)	1	1	0	0	0	1	0	0	0	0
IPR019786	Zinc finger, PHD-type, conserved site	3 (2.17%)	1	1	0	0	0	1	0	0	0	0
IPR020045	5'-3' exonuclease, C-terminal domain	2 (1.45%)	0	0	1	0	0	0	1	0	0	0
IPR016181	Acyl-CoA N-acyltransferase	2 (1.45%)	0	0	0	0	0	1	0	0	0	1
IPR013763	Cyclin-like	2 (1.45%)	0	0	0	0	0	0	0	0	0	2
IPR013627	DNA polymerase alpha, subunit B N-terminal	2 (1.45%)	1	0	0	0	1	0	0	0	0	0
IPR004085	DNA topoisomerase VI, subunit A	2 (1.45%)	0	0	0	0	1	1	0	0	0	0
IPR013719	Domain of unknown function DUF1747	2 (1.45%)	0	0	0	0	0	0	1	0	0	1
IPR013953	FACT complex subunit Spt16p/Cdc68p	2 (1.45%)	0	0	0	0	0	0	1	0	0	1
IPR010255	Haem peroxidase	2 (1.45%)	0	0	0	0	0	1	1	0	0	0
IPR002016	Haem peroxidase, plant/fungal/bacterial	2 (1.45%)	0	0	0	0	0	1	1	0	0	0
IPR008918	Helix-hairpin-helix motif, class 2	2 (1.45%)	0	0	1	0	0	0	1	0	0	0
IPR019467	Histone acetyl transferase HAT1 N-terminal	2 (1.45%)	0	0	0	0	0	1	0	0	0	1
IPR017380	Histone acetyltransferase type B, catalytic subunit	2 (1.45%)	0	0	0	0	0	1	0	0	0	1
IPR027443	Isopenicillin N synthase-like	2 (1.45%)	0	0	0	0	0	2	0	0	0	0
IPR013940	Meiosis specific protein SPO22	2 (1.45%)	0	0	0	0	2	0	0	0	0	0
IPR019140	Mini-chromosome maintenance complex-binding protein	2 (1.45%)	0	0	0	0	0	0	0	1	1	0
IPR026992	Non-haem dioxygenase N-terminal domain	2 (1.45%)	0	0	0	0	0	2	0	0	0	0
IPR011513	Non-structural maintenance of chromosomes element 1	2 (1.45%)	0	0	1	0	0	0	1	0	0	0
IPR005123	Oxoglutarate/iron-dependent dioxygenase	2 (1.45%)	0	0	0	0	0	2	0	0	0	0
IPR000994	Peptidase M24, structural domain	2 (1.45%)	0	0	0	0	0	0	1	0	0	1
IPR019794	Peroxidase, active site	2 (1.45%)	0	0	0	0	0	1	1	0	0	0
IPR000823	Plant peroxidase	2 (1.45%)	0	0	0	0	0	1	1	0	0	0
IPR003395	RecF/RecN/SMC, N-terminal	2 (1.45%)	0	0	0	0	1	0	0	0	0	1
IPR002815	Spo11/DNA topoisomerase VI, subunit A	2 (1.45%)	0	0	0	0	1	1	0	0	0	0
IPR013049	Spo11/DNA topoisomerase VI, subunit A, N-terminal	2 (1.45%)	0	0	0	0	1	1	0	0	0	0
IPR027120	Structural maintenance of chromosomes Smc2	2 (1.45%)	0	0	0	0	1	0	0	0	0	1
IPR005016	TMS membrane protein/tumour differentially expressed protein	2 (1.45%)	0	0	0	0	2	0	0	0	0	0
IPR011990	Tetratricopeptide-like helical	2 (1.45%)	0	0	0	0	1	1	0	0	0	0
IPR003958	Transcription factor CBF/NF-Y/archaeal histone	2 (1.45%)	0	0	0	0	0	0	1	0	0	1
IPR006461	Uncharacterised protein family Cys-rich	2 (1.45%)	0	0	0	0	2	0	0	0	0	0
IPR011991	Winged helix-turn-helix DNA-binding domain	2 (1.45%)	0	0	0	0	1	1	0	0	0	0
IPR006085	XPG N-terminal	2 (1.45%)	0	0	1	0	0	0	1	0	0	0
IPR019974	XPG conserved site	2 (1.45%)	0	0	1	0	0	0	1	0	0	0
IPR006086	XPG-I domain	2 (1.45%)	0	0	1	0	0	0	1	0	0	0
IPR006084	XPG/Rad2 endonuclease	2 (1.45%)	0	0	1	0	0	0	1	0	0	0
IPR014857	Zinc finger, RING-like	2 (1.45%)	0	0	1	0	0	0	1	0	0	0
IPR001606	ARID/BRIGHT DNA-binding domain	1 (0.72%)	0	0	0	0	0	1	0	0	0	0
IPR015519	ATM/Tel1	1 (0.72%)	0	0	0	0	0	0	0	0	0	1
IPR003960	ATPase, AAA-type, conserved site	1 (0.72%)	0	0	0	0	1	0	0	0	0	0
IPR006195	Aminoacyl-tRNA synthetase, class II	1 (0.72%)	0	0	0	0	0	0	0	0	0	1
IPR004154	Anticodon-binding	1 (0.72%)	0	0	0	0	0	0	0	0	0	1
IPR016024	Armadillo-type fold	1 (0.72%)	0	0	0	0	0	0	0	0	0	1
IPR000008	C2 domain	1 (0.72%)	0	0	0	0	0	0	1	0	0	0
IPR005172	CRC domain	1 (0.72%)	1	0	0	0	0	0	0	0	0	0
IPR006153	Cation/H+ exchanger	1 (0.72%)	0	0	0	1	0	0	0	0	0	0
IPR004367	Cyclin, C-terminal domain	1 (0.72%)	0	0	0	0	0	0	0	0	0	1
IPR006671	Cyclin, N-terminal	1 (0.72%)	0	0	0	0	0	0	0	0	0	1
IPR008921	DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal	1 (0.72%)	0	1	0	0	0	0	0	0	0	0
IPR024639	DNA polymerase epsilon subunit B, N-terminal	1 (0.72%)	0	1	0	0	0	0	0	0	0	0
IPR019038	DNA polymerase subunit Cdc27	1 (0.72%)	0	0	0	0	0	0	0	1	0	0
IPR013765	DNA recombination and repair protein RecA	1 (0.72%)	0	0	0	0	0	1	0	0	0	0
IPR023400	DNA recombination and repair protein RecA, C-terminal	1 (0.72%)	0	0	0	0	0	1	0	0	0	0
IPR020584	DNA recombination/repair protein RecA, conserved site	1 (0.72%)	0	0	0	0	0	1	0	0	0	0
IPR020587	DNA recombination/repair protein RecA, monomer-monomer interface	1 (0.72%)	0	0	0	0	0	1	0	0	0	0
IPR020588	DNA recombination/repair protein RecA-like, ATP-binding domain	1 (0.72%)	0	0	0	0	0	1	0	0	0	0
IPR000949	ELM2 domain	1 (0.72%)	0	0	0	0	0	1	0	0	0	0
IPR002740	EVE domain	1 (0.72%)	0	0	0	0	0	1	0	0	0	0
IPR015807	Histidine-tRNA ligase	1 (0.72%)	0	0	0	0	0	0	0	0	0	1
IPR004516	Histidine-tRNA ligase/ATP phosphoribosyltransferase regulatory subunit	1 (0.72%)	0	0	0	0	0	0	0	0	0	1
IPR000164	Histone H3	1 (0.72%)	0	0	0	0	0	0	0	1	0	0
IPR007125	Histone core	1 (0.72%)	0	0	0	0	0	0	0	1	0	0
IPR003347	JmjC domain	1 (0.72%)	0	0	0	0	0	0	0	0	1	0
IPR003590	Leucine-rich repeat, ribonuclease inhibitor subtype	1 (0.72%)	0	0	0	0	0	1	0	0	0	0
IPR002717	MOZ/SAS-like protein	1 (0.72%)	0	0	0	0	0	0	0	0	0	1
IPR008047	Mini-chromosome maintenance complex protein 4	1 (0.72%)	0	0	1	0	0	0	0	0	0	0
IPR012463	Ninja	1 (0.72%)	0	0	0	0	0	0	0	1	0	0
IPR020795	Origin recognition complex, subunit 3	1 (0.72%)	0	0	0	0	0	1	0	0	0	0
IPR014009	PIK-related kinase	1 (0.72%)	0	0	0	0	0	0	0	0	0	1
IPR003151	PIK-related kinase, FAT	1 (0.72%)	0	0	0	0	0	0	0	0	0	1
IPR003152	PIK-related kinase, FATC	1 (0.72%)	0	0	0	0	0	0	0	0	0	1
IPR015947	PUA-like domain	1 (0.72%)	0	0	0	0	0	1	0	0	0	0
IPR002610	Peptidase S54, rhomboid	1 (0.72%)	0	0	1	0	0	0	0	0	0	0
IPR022764	Peptidase S54, rhomboid domain	1 (0.72%)	0	0	1	0	0	0	0	0	0	0
IPR000403	Phosphatidylinositol 3-/4-kinase, catalytic domain	1 (0.72%)	0	0	0	0	0	0	0	0	0	1
IPR018936	Phosphatidylinositol 3/4-kinase, conserved site	1 (0.72%)	0	0	0	0	0	0	0	0	0	1
IPR015679	Phospholipase D family	1 (0.72%)	0	0	0	0	0	0	1	0	0	0
IPR024632	Phospholipase D, C-terminal	1 (0.72%)	0	0	0	0	0	0	1	0	0	0
IPR001736	Phospholipase D/Transphosphatidylase	1 (0.72%)	0	0	0	0	0	0	1	0	0	0
IPR011009	Protein kinase-like domain	1 (0.72%)	0	0	0	0	0	0	0	0	0	1
IPR009829	Protein of unknown function DUF1395	1 (0.72%)	0	0	0	0	0	0	1	0	0	0
IPR011047	Quinonprotein alcohol dehydrogenase-like superfamily	1 (0.72%)	0	0	0	0	0	0	1	0	0	0
IPR002942	RNA-binding S4 domain	1 (0.72%)	0	0	0	0	0	0	0	0	1	0
IPR013748	Replication factor C, C-terminal domain	1 (0.72%)	0	1	0	0	0	0	0	0	0	0
IPR028309	Retinoblastoma protein family	1 (0.72%)	0	0	0	0	0	0	0	0	0	1
IPR002720	Retinoblastoma-associated protein, A-box	1 (0.72%)	0	0	0	0	0	0	0	0	0	1
IPR002719	Retinoblastoma-associated protein, B-box	1 (0.72%)	0	0	0	0	0	0	0	0	0	1
IPR024599	Retinoblastoma-associated protein, N-terminal	1 (0.72%)	0	0	0	0	0	0	0	0	0	1
IPR010935	SMCs flexible hinge	1 (0.72%)	0	0	0	0	1	0	0	0	0	0
IPR024813	TONSOKU	1 (0.72%)	0	0	0	0	0	1	0	0	0	0
IPR019734	Tetratricopeptide repeat	1 (0.72%)	0	0	0	0	0	1	0	0	0	0
IPR013026	Tetratricopeptide repeat-containing domain	1 (0.72%)	0	0	0	0	0	1	0	0	0	0
IPR003349	Transcription factor jumonji, JmjN	1 (0.72%)	0	0	0	0	0	0	0	0	1	0
IPR015415	Vps4 oligomerisation, C-terminal	1 (0.72%)	0	0	0	0	1	0	0	0	0	0
IPR004198	Zinc finger, C5HC2-type	1 (0.72%)	0	0	0	0	0	0	0	0	1	0