PLAZA 3.0 Dicots : Binding Sites

MapMan terms associated with a binding site

Binding site: Motif_253
Name: S1FSORPL21
Description: S1F binding site (S1 site) in spinach (S.o.) RPL21 gene encoding the plastid ribosomal protein L21; Negative element; Might play a role in downregulating RPL21 promoter activity

#Associated genes: 583
#Associated MapMan terms: 207

Show species without binding site experiments

Click table-header(s) to enable sorting

MapMan	Description	#Associated genes	ath	bra	egr	gma	ptr	ppe	sly	vvi
27	RNA	96 (16.47%)	8	8	10	19	16	16	7	12
27.3	RNA.regulation of transcription	70 (12.01%)	5	6	6	13	11	13	4	12
29	protein	58 (9.95%)	8	8	3	14	9	6	2	8
17	hormone metabolism	37 (6.35%)	1	1	3	23	3	3	1	2
29.4	protein.postranslational modification	33 (5.66%)	3	4	1	9	8	1	2	5
17.2	hormone metabolism.auxin	32 (5.49%)	0	1	2	22	2	2	1	2
17.2.3	hormone metabolism.auxin.induced-regulated-responsive-activated	28 (4.80%)	0	1	2	22	1	1	1	0
30	signalling	26 (4.46%)	0	3	4	3	8	4	0	4
33	development	26 (4.46%)	3	1	3	4	7	3	1	4
33.99	development.unspecified	23 (3.95%)	3	1	3	4	5	3	0	4
1	PS	18 (3.09%)	1	0	2	3	4	1	7	0
26	misc	16 (2.74%)	3	1	1	4	4	2	1	0
27.1	RNA.processing	16 (2.74%)	3	0	4	6	2	1	0	0
1.1	PS.lightreaction	13 (2.23%)	1	0	1	3	3	1	4	0
20	stress	13 (2.23%)	0	1	1	4	6	1	0	0
34	transport	13 (2.23%)	1	0	1	4	1	3	0	3
31	cell	12 (2.06%)	1	1	1	3	1	3	0	2
27.3.99	RNA.regulation of transcription.unclassified	11 (1.89%)	0	0	1	3	1	4	0	2
29.4.1	protein.postranslational modification.kinase	11 (1.89%)	1	1	0	2	2	1	2	2
29.5	protein.degradation	11 (1.89%)	3	2	1	2	0	2	0	1
29.4.1.57	protein.postranslational modification.kinase.receptor like cytoplasmatic kinase VII	10 (1.72%)	0	1	0	2	2	1	2	2
10	cell wall	9 (1.54%)	2	1	0	0	2	2	0	2
20.2	stress.abiotic	9 (1.54%)	0	1	0	2	5	1	0	0
27.3.6	RNA.regulation of transcription.bHLH,Basic Helix-Loop-Helix family	9 (1.54%)	0	1	1	2	1	3	0	1
27.4	RNA.RNA binding	9 (1.54%)	0	2	0	0	3	2	2	0
29.5.11.4.2	protein.degradation.ubiquitin.E3.RING	9 (1.54%)	0	1	0	2	0	3	0	3
11	lipid metabolism	8 (1.37%)	0	1	1	1	0	2	0	3
29.2.1.1.1.1.7	protein.synthesis.ribosomal protein.prokaryotic.chloroplast.30S subunit.S7	8 (1.37%)	0	0	2	0	1	0	5	0
30.2	signalling.receptor kinases	8 (1.37%)	0	2	2	0	3	0	0	1
1.1.40	PS.lightreaction.cyclic electron flow-chlororespiration	7 (1.20%)	0	0	1	0	3	0	3	0
9	mitochondrial electron transport / ATP synthesis	7 (1.20%)	0	0	0	0	1	2	2	2
20.2.99	stress.abiotic.unspecified	7 (1.20%)	0	0	0	2	5	0	0	0
27.3.22	RNA.regulation of transcription.HB,Homeobox transcription factor family	7 (1.20%)	0	0	1	2	1	1	1	1
28	DNA	7 (1.20%)	0	1	0	3	1	1	0	1
29.3	protein.targeting	7 (1.20%)	1	1	0	1	0	2	0	2
31.1	cell.organisation	7 (1.20%)	0	0	1	2	1	1	0	2
2	major CHO metabolism	6 (1.03%)	1	2	0	0	1	1	0	1
27.3.26	RNA.regulation of transcription.MYB-related transcription factor family	6 (1.03%)	1	2	1	0	1	0	0	1
30.5	signalling.G-proteins	6 (1.03%)	0	0	1	1	2	1	0	1
1.3	PS.calvin cycle	5 (0.86%)	0	0	1	0	1	0	3	0
10.6	cell wall.degradation	5 (0.86%)	2	0	0	0	2	0	0	1
11.3	lipid metabolism.Phospholipid synthesis	5 (0.86%)	0	1	0	1	0	1	0	2
13	amino acid metabolism	5 (0.86%)	0	0	0	0	4	0	0	1
27.3.11	RNA.regulation of transcription.C2H2 zinc finger family	5 (0.86%)	0	0	1	1	1	1	1	0
29.3.4	protein.targeting.secretory pathway	5 (0.86%)	1	1	0	1	0	1	0	1
30.11	signalling.light	5 (0.86%)	0	0	1	0	2	2	0	0
1.3.1	PS.calvin cycle.rubisco large subunit	4 (0.69%)	0	0	0	0	1	0	3	0
10.6.3	cell wall.degradation.pectate lyases and polygalacturonases	4 (0.69%)	1	0	0	0	2	0	0	1
2.2	major CHO metabolism.degradation	4 (0.69%)	0	1	0	0	1	1	0	1
13.1	amino acid metabolism.synthesis	4 (0.69%)	0	0	0	0	3	0	0	1
2.2.2	major CHO metabolism.degradation.starch	4 (0.69%)	0	1	0	0	1	1	0	1
2.2.2.2	major CHO metabolism.degradation.starch.starch phosphorylase	4 (0.69%)	0	1	0	0	1	1	0	1
16	secondary metabolism	4 (0.69%)	1	0	1	0	0	2	0	0
20.1	stress.biotic	4 (0.69%)	0	0	1	2	1	0	0	0
27.3.35	RNA.regulation of transcription.bZIP transcription factor family	4 (0.69%)	0	1	0	0	0	0	1	2
29.3.4.3	protein.targeting.secretory pathway.vacuole	4 (0.69%)	1	0	0	1	0	1	0	1
29.5.11	protein.degradation.ubiquitin	4 (0.69%)	2	1	0	0	0	1	0	0
30.2.11	signalling.receptor kinases.leucine rich repeat XI	4 (0.69%)	0	0	2	0	2	0	0	0
9.5	mitochondrial electron transport / ATP synthesis.cytochrome c reductase	4 (0.69%)	0	0	0	0	0	2	0	2
28.1	DNA.synthesis/chromatin structure	4 (0.69%)	0	1	0	0	1	1	0	1
30.3	signalling.calcium	4 (0.69%)	0	1	0	2	1	0	0	0
31.2	cell.division	4 (0.69%)	0	1	0	1	0	2	0	0
34.2	transport.sugars	4 (0.69%)	0	0	1	1	1	0	0	1
1.1.1	PS.lightreaction.photosystem II	3 (0.51%)	1	0	0	1	0	1	0	0
3	minor CHO metabolism	3 (0.51%)	0	1	0	1	0	1	0	0
9.9	mitochondrial electron transport / ATP synthesis.F1-ATPase	3 (0.51%)	0	0	0	0	1	0	2	0
11.1	lipid metabolism.FA synthesis and FA elongation	3 (0.51%)	0	0	1	0	0	1	0	1
17.2.2	hormone metabolism.auxin.signal transduction	3 (0.51%)	0	0	0	0	1	1	0	1
26.12	misc.peroxidases	3 (0.51%)	0	0	0	3	0	0	0	0
26.3	misc.gluco-, galacto- and mannosidases	3 (0.51%)	0	1	0	0	1	1	0	0
26.3.1	misc.gluco-, galacto- and mannosidases.alpha-galactosidase	3 (0.51%)	0	1	0	0	1	1	0	0
26.8	misc.nitrilases, *nitrile lyases, berberine bridge enzymes, reticuline oxidases, troponine reductases	3 (0.51%)	1	0	0	1	0	0	1	0
27.3.29	RNA.regulation of transcription.TCP transcription factor family	3 (0.51%)	1	0	0	1	0	1	0	0
27.3.40	RNA.regulation of transcription.Aux/IAA family	3 (0.51%)	0	0	0	0	2	1	0	0
27.3.44	RNA.regulation of transcription.Chromatin Remodeling Factors	3 (0.51%)	0	0	0	0	0	1	1	1
27.3.67	RNA.regulation of transcription.putative transcription regulator	3 (0.51%)	1	0	0	0	0	1	0	1
28.99	DNA.unspecified	3 (0.51%)	0	0	0	3	0	0	0	0
29.2.1.1.3.1.18	protein.synthesis.ribosomal protein.prokaryotic.unknown organellar.30S subunit.S18	3 (0.51%)	1	0	0	1	0	0	0	1
30.2.17	signalling.receptor kinases.DUF 26	3 (0.51%)	0	2	0	0	0	0	0	1
33.1	development.storage proteins	3 (0.51%)	0	0	0	0	2	0	1	0
34.15	transport.potassium	3 (0.51%)	0	0	0	1	0	1	0	1
1.1.1.2	PS.lightreaction.photosystem II.PSII polypeptide subunits	2 (0.34%)	1	0	0	1	0	0	0	0
1.1.2	PS.lightreaction.photosystem I	2 (0.34%)	0	0	0	2	0	0	0	0
1.1.2.2	PS.lightreaction.photosystem I.PSI polypeptide subunits	2 (0.34%)	0	0	0	2	0	0	0	0
10.8	cell wall.pectin*esterases	2 (0.34%)	0	1	0	0	0	1	0	0
10.8.1	cell wall.pectin*esterases.PME	2 (0.34%)	0	1	0	0	0	1	0	0
11.1.8	lipid metabolism.FA synthesis and FA elongation.acyl coa ligase	2 (0.34%)	0	0	0	0	0	1	0	1
11.3.4	lipid metabolism.Phospholipid synthesis.CDP-diacylglycerol-inositol 3-phosphatidyltransferase	2 (0.34%)	0	1	0	0	0	0	0	1
13.1.5	amino acid metabolism.synthesis.serine-glycine-cysteine group	2 (0.34%)	0	0	0	0	2	0	0	0
13.1.5.3	amino acid metabolism.synthesis.serine-glycine-cysteine group.cysteine	2 (0.34%)	0	0	0	0	2	0	0	0
17.5.1	hormone metabolism.ethylene.synthesis-degradation	2 (0.34%)	0	0	0	1	1	0	0	0
2.1	major CHO metabolism.synthesis	2 (0.34%)	1	1	0	0	0	0	0	0
2.1.2	major CHO metabolism.synthesis.starch	2 (0.34%)	1	1	0	0	0	0	0	0
2.1.2.2	major CHO metabolism.synthesis.starch.starch synthase	2 (0.34%)	1	1	0	0	0	0	0	0
3.5	minor CHO metabolism.others	2 (0.34%)	0	1	0	0	0	1	0	0
16.1	secondary metabolism.isoprenoids	2 (0.34%)	0	0	0	0	0	2	0	0
17.5	hormone metabolism.ethylene	2 (0.34%)	0	0	0	1	1	0	0	0
26.16	misc.myrosinases-lectin-jacalin	2 (0.34%)	1	0	0	0	1	0	0	0
27.1.1	RNA.processing.splicing	2 (0.34%)	1	0	0	1	0	0	0	0
27.1.19	RNA.processing.ribonucleases	2 (0.34%)	0	0	1	0	0	1	0	0
27.3.30	RNA.regulation of transcription.Trihelix, Triple-Helix transcription factor family	2 (0.34%)	0	1	0	0	1	0	0	0
27.3.32	RNA.regulation of transcription.WRKY domain transcription factor family	2 (0.34%)	0	0	0	1	0	0	0	1
27.3.37	RNA.regulation of transcription.AS2,Lateral Organ Boundaries Gene Family	2 (0.34%)	0	0	0	1	1	0	0	0
27.3.55	RNA.regulation of transcription.HDA	2 (0.34%)	0	0	0	2	0	0	0	0
27.3.64	RNA.regulation of transcription.PHOR1	2 (0.34%)	0	1	1	0	0	0	0	0
29.1	protein.aa activation	2 (0.34%)	1	0	0	0	0	1	0	0
29.3.1	protein.targeting.nucleus	2 (0.34%)	0	0	0	0	0	1	0	1
29.5.11.5	protein.degradation.ubiquitin.ubiquitin protease	2 (0.34%)	2	0	0	0	0	0	0	0
29.5.3	protein.degradation.cysteine protease	2 (0.34%)	1	0	0	1	0	0	0	0
29.5.7	protein.degradation.metalloprotease	2 (0.34%)	0	0	0	0	0	1	0	1
29.7	protein.glycosylation	2 (0.34%)	0	0	0	1	1	0	0	0
29.8	protein.assembly and cofactor ligation	2 (0.34%)	0	1	0	1	0	0	0	0
30.6	signalling.MAP kinases	2 (0.34%)	0	0	0	0	0	0	0	2
34.19	transport.Major Intrinsic Proteins	2 (0.34%)	0	0	0	1	0	1	0	0
34.19.1	transport.Major Intrinsic Proteins.PIP	2 (0.34%)	0	0	0	1	0	1	0	0
1.1.1.1	PS.lightreaction.photosystem II.LHC-II	1 (0.17%)	0	0	0	0	0	1	0	0
1.1.4	PS.lightreaction.ATP synthase	1 (0.17%)	0	0	0	0	0	0	1	0
1.1.4.2	PS.lightreaction.ATP synthase.beta subunit	1 (0.17%)	0	0	0	0	0	0	1	0
10.1.5	cell wall.precursor synthesis.UXS	1 (0.17%)	0	0	0	0	0	1	0	0
10.5.4	cell wall.cell wall proteins.HRGP	1 (0.17%)	0	0	0	0	0	0	0	1
10.6.2	cell wall.degradation.mannan-xylose-arabinose-fucose	1 (0.17%)	1	0	0	0	0	0	0	0
11.1.31	lipid metabolism.FA synthesis and FA elongation.pyruvate DH	1 (0.17%)	0	0	1	0	0	0	0	0
11.3.6	lipid metabolism.Phospholipid synthesis.choline-phosphate cytidylyltransferase	1 (0.17%)	0	0	0	0	0	1	0	0
13.1.1	amino acid metabolism.synthesis.central amino acid metabolism	1 (0.17%)	0	0	0	0	1	0	0	0
13.1.1.1	amino acid metabolism.synthesis.central amino acid metabolism.GABA	1 (0.17%)	0	0	0	0	1	0	0	0
13.1.1.1.1	amino acid metabolism.synthesis.central amino acid metabolism.GABA.Glutamate decarboxylase	1 (0.17%)	0	0	0	0	1	0	0	0
13.1.3.4.11	amino acid metabolism.synthesis.aspartate family.methionine.S-adenosylmethionine synthetase	1 (0.17%)	1	0	0	0	0	0	0	0
13.1.4	amino acid metabolism.synthesis.branched chain group	1 (0.17%)	0	0	0	0	0	0	0	1
13.1.4.1	amino acid metabolism.synthesis.branched chain group.common	1 (0.17%)	0	0	0	0	0	0	0	1
13.1.4.1.1	amino acid metabolism.synthesis.branched chain group.common.acetolactate synthase	1 (0.17%)	0	0	0	0	0	0	0	1
13.1.6.1.10	amino acid metabolism.synthesis.aromatic aa.chorismate.dehydroquinate/shikimate dehydrogenase	1 (0.17%)	0	0	0	0	1	0	0	0
16.1.4	secondary metabolism.isoprenoids.carotenoids	1 (0.17%)	0	0	0	0	0	1	0	0
16.1.4.4	secondary metabolism.isoprenoids.carotenoids.lycopene epsilon cyclase	1 (0.17%)	0	0	0	0	0	1	0	0
16.1.5	secondary metabolism.isoprenoids.terpenoids	1 (0.17%)	0	0	0	0	0	1	0	0
16.4.1	secondary metabolism.N misc.alkaloid-like	1 (0.17%)	1	0	0	0	0	0	0	0
16.8.5	secondary metabolism.flavonoids.isoflavones	1 (0.17%)	0	0	1	0	0	0	0	0
16.8.5.1	secondary metabolism.flavonoids.isoflavones.isoflavone reductase	1 (0.17%)	0	0	1	0	0	0	0	0
17.1.1	hormone metabolism.abscisic acid.synthesis-degradation	1 (0.17%)	0	0	1	0	0	0	0	0
17.2.1	hormone metabolism.auxin.synthesis-degradation	1 (0.17%)	0	0	0	0	0	0	0	1
17.3.2	hormone metabolism.brassinosteroid.signal transduction	1 (0.17%)	1	0	0	0	0	0	0	0
17.3.2.2	hormone metabolism.brassinosteroid.signal transduction.BZR	1 (0.17%)	1	0	0	0	0	0	0	0
17.6.2	hormone metabolism.gibberelin.signal transduction	1 (0.17%)	0	0	0	0	0	1	0	0
20.2.1	stress.abiotic.heat	1 (0.17%)	0	1	0	0	0	0	0	0
20.2.3	stress.abiotic.drought/salt	1 (0.17%)	0	0	0	0	0	1	0	0
21.2.2	redox.ascorbate and glutathione.glutathione	1 (0.17%)	0	0	0	1	0	0	0	0
22.2.1	polyamine metabolism.degradation.polyamin oxidase	1 (0.17%)	0	0	0	0	0	0	0	1
27.3.10	RNA.regulation of transcription.C2C2(Zn) YABBY family	1 (0.17%)	0	0	1	0	0	0	0	0
27.3.21	RNA.regulation of transcription.GRAS transcription factor family	1 (0.17%)	1	0	0	0	0	0	0	0
27.3.24	RNA.regulation of transcription.MADS box transcription factor family	1 (0.17%)	0	0	0	0	1	0	0	0
27.3.25	RNA.regulation of transcription.MYB domain transcription factor family	1 (0.17%)	0	0	0	0	1	0	0	0
27.3.36	RNA.regulation of transcription.Argonaute	1 (0.17%)	0	0	0	0	0	0	0	1
27.3.4	RNA.regulation of transcription.ARF, Auxin Response Factor family	1 (0.17%)	0	0	0	1	0	0	0	0
27.3.5	RNA.regulation of transcription.ARR	1 (0.17%)	1	0	0	0	0	0	0	0
27.3.66	RNA.regulation of transcription.Psudo ARR transcription factor family	1 (0.17%)	0	0	0	0	0	0	0	1
27.3.8	RNA.regulation of transcription.C2C2(Zn) DOF zinc finger family	1 (0.17%)	0	0	0	0	0	1	0	0
28.1.1	DNA.synthesis/chromatin structure.retrotransposon/transposase	1 (0.17%)	0	0	0	0	1	0	0	0
28.1.1.4	DNA.synthesis/chromatin structure.retrotransposon/transposase.hat-like transposase	1 (0.17%)	0	0	0	0	1	0	0	0
29.1.12	protein.aa activation.aspartate-tRNA ligase	1 (0.17%)	1	0	0	0	0	0	0	0
29.1.22	protein.aa activation.asparagine-tRNA ligase	1 (0.17%)	0	0	0	0	0	1	0	0
29.2.1.2.1.23	protein.synthesis.ribosomal protein.eukaryotic.40S subunit.S23	1 (0.17%)	0	0	0	0	0	1	0	0
29.2.3	protein.synthesis.initiation	1 (0.17%)	0	0	1	0	0	0	0	0
29.3.4.2	protein.targeting.secretory pathway.golgi	1 (0.17%)	0	1	0	0	0	0	0	0
29.4.1.59	protein.postranslational modification.kinase.receptor like cytoplasmatic kinase IX	1 (0.17%)	1	0	0	0	0	0	0	0
29.5.1	protein.degradation.subtilases	1 (0.17%)	0	1	0	0	0	0	0	0
29.5.11.1	protein.degradation.ubiquitin.ubiquitin	1 (0.17%)	0	1	0	0	0	0	0	0
29.5.11.3	protein.degradation.ubiquitin.E2	1 (0.17%)	0	0	0	0	0	1	0	0
29.5.11.4.3.2	protein.degradation.ubiquitin.E3.SCF.FBOX	1 (0.17%)	1	0	0	0	0	0	0	0
29.5.11.4.3.3	protein.degradation.ubiquitin.E3.SCF.cullin	1 (0.17%)	0	0	0	0	0	0	0	1
29.5.9	protein.degradation.AAA type	1 (0.17%)	0	0	1	0	0	0	0	0
3.2	minor CHO metabolism.trehalose	1 (0.17%)	0	0	0	1	0	0	0	0
3.2.2	minor CHO metabolism.trehalose.TPP	1 (0.17%)	0	0	0	1	0	0	0	0
4	glycolysis	1 (0.17%)	1	0	0	0	0	0	0	0
30.2.25	signalling.receptor kinases.wall associated kinase	1 (0.17%)	0	0	0	0	1	0	0	0
4.1	glycolysis.cytosolic branch	1 (0.17%)	1	0	0	0	0	0	0	0
4.1.4	glycolysis.cytosolic branch.phosphofructokinase (PFK)	1 (0.17%)	1	0	0	0	0	0	0	0
8	TCA / org transformation	1 (0.17%)	0	0	0	1	0	0	0	0
8.1	TCA / org transformation.TCA	1 (0.17%)	0	0	0	1	0	0	0	0
10.1	cell wall.precursor synthesis	1 (0.17%)	0	0	0	0	0	1	0	0
10.5	cell wall.cell wall proteins	1 (0.17%)	0	0	0	0	0	0	0	1
13.99	amino acid metabolism.misc	1 (0.17%)	0	0	0	0	1	0	0	0
15.2	metal handling.binding, chelation and storage	1 (0.17%)	1	0	0	0	0	0	0	0
16.4	secondary metabolism.N misc	1 (0.17%)	1	0	0	0	0	0	0	0
16.8	secondary metabolism.flavonoids	1 (0.17%)	0	0	1	0	0	0	0	0
17.1	hormone metabolism.abscisic acid	1 (0.17%)	0	0	1	0	0	0	0	0
17.3	hormone metabolism.brassinosteroid	1 (0.17%)	1	0	0	0	0	0	0	0
17.6	hormone metabolism.gibberelin	1 (0.17%)	0	0	0	0	0	1	0	0
21.2	redox.ascorbate and glutathione	1 (0.17%)	0	0	0	1	0	0	0	0
22.2	polyamine metabolism.degradation	1 (0.17%)	0	0	0	0	0	0	0	1
26.1	misc.misc2	1 (0.17%)	0	0	1	0	0	0	0	0
26.17	misc.dynamin	1 (0.17%)	0	0	0	0	1	0	0	0
26.2	misc.UDP glucosyl and glucoronyl transferases	1 (0.17%)	0	0	0	0	0	1	0	0
26.21	misc.protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	1 (0.17%)	1	0	0	0	0	0	0	0
26.28	misc.GDSL-motif lipase	1 (0.17%)	0	0	0	0	1	0	0	0
27.2	RNA.transcription	1 (0.17%)	0	0	0	0	0	0	1	0
29.2	protein.synthesis	1 (0.17%)	0	0	1	0	0	0	0	0
30.1	signalling.in sugar and nutrient physiology	1 (0.17%)	0	0	0	0	0	1	0	0
31.3	cell.cycle	1 (0.17%)	1	0	0	0	0	0	0	0
34.12	transport.metal	1 (0.17%)	0	0	0	1	0	0	0	0
34.16	transport.ABC transporters and multidrug resistance systems	1 (0.17%)	1	0	0	0	0	0	0	0
34.3	transport.amino acids	1 (0.17%)	0	0	0	0	0	1	0	0
34.99	transport.misc	1 (0.17%)	0	0	0	0	0	0	0	1
8.1.1	TCA / org transformation.TCA.pyruvate DH	1 (0.17%)	0	0	0	1	0	0	0	0
8.1.1.3	TCA / org transformation.TCA.pyruvate DH.E3	1 (0.17%)	0	0	0	1	0	0	0	0
15	metal handling	1 (0.17%)	1	0	0	0	0	0	0	0
18	Co-factor and vitamine metabolism	1 (0.17%)	0	0	0	0	0	0	0	1
21	redox	1 (0.17%)	0	0	0	1	0	0	0	0
22	polyamine metabolism	1 (0.17%)	0	0	0	0	0	0	0	1