PLAZA 3.0 Dicots : Binding Sites

MapMan terms associated with a binding site

Binding site: Motif_248
Name: L1-box
Description: Arabidopsis DELLA and two HD-ZIP transcription factors regulate GA signaling in the epidermis through the L1 box cis-element

#Associated genes: 704
#Associated MapMan terms: 210

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MapMan	Description	#Associated genes	ath	egr	gma	ptr	ppe	sly	vvi
27	RNA	144 (20.45%)	10	9	28	47	23	8	19
27.3	RNA.regulation of transcription	121 (17.19%)	8	6	25	39	18	8	17
29	protein	71 (10.09%)	5	7	5	17	16	8	13
29.4	protein.postranslational modification	47 (6.68%)	1	6	5	11	11	5	8
26	misc	39 (5.54%)	6	7	2	12	2	6	4
30	signalling	33 (4.69%)	0	7	3	9	5	2	7
34	transport	30 (4.26%)	2	1	4	6	8	5	4
27.3.6	RNA.regulation of transcription.bHLH,Basic Helix-Loop-Helix family	25 (3.55%)	2	1	5	8	5	3	1
29.5.11.4.2	protein.degradation.ubiquitin.E3.RING	23 (3.27%)	2	2	4	6	2	2	5
17	hormone metabolism	22 (3.13%)	4	3	4	4	3	0	4
31	cell	22 (3.13%)	1	0	5	5	4	2	5
29.4.1	protein.postranslational modification.kinase	20 (2.84%)	1	3	2	4	5	1	4
27.3.11	RNA.regulation of transcription.C2H2 zinc finger family	18 (2.56%)	0	1	4	8	2	0	3
33	development	18 (2.56%)	4	1	3	3	2	3	2
29.4.1.57	protein.postranslational modification.kinase.receptor like cytoplasmatic kinase VII	17 (2.41%)	0	3	2	4	4	1	3
29.5	protein.degradation	17 (2.41%)	3	1	0	4	4	3	2
30.2	signalling.receptor kinases	16 (2.27%)	0	4	2	3	2	2	3
33.99	development.unspecified	16 (2.27%)	4	1	3	2	2	3	1
17.2	hormone metabolism.auxin	13 (1.85%)	2	2	2	3	3	0	1
26.12	misc.peroxidases	13 (1.85%)	2	3	1	3	0	2	2
27.3.22	RNA.regulation of transcription.HB,Homeobox transcription factor family	13 (1.85%)	1	1	6	1	2	0	2
28	DNA	13 (1.85%)	1	0	0	3	5	2	2
16	secondary metabolism	12 (1.70%)	1	3	0	4	2	2	0
27.4	RNA.RNA binding	12 (1.70%)	1	0	3	6	2	0	0
20	stress	11 (1.56%)	3	0	0	2	3	1	2
27.3.25	RNA.regulation of transcription.MYB domain transcription factor family	11 (1.56%)	3	1	0	6	0	0	1
28.1	DNA.synthesis/chromatin structure	11 (1.56%)	1	0	0	3	3	2	2
30.2.11	signalling.receptor kinases.leucine rich repeat XI	11 (1.56%)	0	4	2	1	1	2	1
10	cell wall	10 (1.42%)	0	2	2	5	0	0	1
17.2.3	hormone metabolism.auxin.induced-regulated-responsive-activated	10 (1.42%)	2	2	2	1	2	0	1
20.2	stress.abiotic	10 (1.42%)	2	0	0	2	3	1	2
1	PS	8 (1.14%)	0	0	1	3	1	0	3
3	minor CHO metabolism	8 (1.14%)	0	2	0	2	1	1	2
27.1	RNA.processing	8 (1.14%)	1	3	0	2	2	0	0
31.3	cell.cycle	8 (1.14%)	0	0	3	2	1	0	2
1.1	PS.lightreaction	7 (0.99%)	0	0	0	3	1	0	3
11	lipid metabolism	7 (0.99%)	1	2	0	2	0	2	0
27.3.35	RNA.regulation of transcription.bZIP transcription factor family	7 (0.99%)	0	0	2	4	0	1	0
31.1	cell.organisation	7 (0.99%)	0	0	1	3	3	0	0
34.16	transport.ABC transporters and multidrug resistance systems	7 (0.99%)	0	0	0	1	2	1	3
3.2	minor CHO metabolism.trehalose	6 (0.85%)	0	2	0	1	0	1	2
10.7	cell wall.modification	6 (0.85%)	0	1	2	2	0	0	1
16.2	secondary metabolism.phenylpropanoids	6 (0.85%)	1	1	0	1	2	1	0
21	redox	6 (0.85%)	1	0	2	2	1	0	0
26.7	misc.oxidases - copper, flavone etc	6 (0.85%)	0	1	1	2	1	1	0
29.5.1	protein.degradation.subtilases	6 (0.85%)	1	1	0	1	2	1	0
3.2.2	minor CHO metabolism.trehalose.TPP	6 (0.85%)	0	2	0	1	0	1	2
30.3	signalling.calcium	6 (0.85%)	0	0	0	3	2	0	1
30.4	signalling.phosphinositides	6 (0.85%)	0	1	1	3	0	0	1
16.1	secondary metabolism.isoprenoids	5 (0.71%)	0	2	0	2	0	1	0
20.2.99	stress.abiotic.unspecified	5 (0.71%)	2	0	0	1	1	0	1
27.3.99	RNA.regulation of transcription.unclassified	5 (0.71%)	0	0	2	0	1	2	0
29.5.11	protein.degradation.ubiquitin	5 (0.71%)	2	0	0	0	1	1	1
29.5.11.4.3.2	protein.degradation.ubiquitin.E3.SCF.FBOX	5 (0.71%)	1	0	0	2	1	0	1
34.3	transport.amino acids	5 (0.71%)	0	0	2	0	1	1	1
34.8	transport.metabolite transporters at the envelope membrane	5 (0.71%)	2	0	0	1	1	1	0
1.1.1	PS.lightreaction.photosystem II	4 (0.57%)	0	0	0	3	0	0	1
9	mitochondrial electron transport / ATP synthesis	4 (0.57%)	0	0	1	0	0	1	2
9.1	mitochondrial electron transport / ATP synthesis.NADH-DH	4 (0.57%)	0	0	1	0	0	1	2
10.6	cell wall.degradation	4 (0.57%)	0	1	0	3	0	0	0
16.1.5	secondary metabolism.isoprenoids.terpenoids	4 (0.57%)	0	1	0	2	0	1	0
23	nucleotide metabolism	4 (0.57%)	0	0	1	2	0	0	1
26.18	misc.invertase/pectin methylesterase inhibitor family protein	4 (0.57%)	1	0	0	1	0	2	0
26.28	misc.GDSL-motif lipase	4 (0.57%)	1	0	0	1	0	1	1
27.1.2	RNA.processing.RNA helicase	4 (0.57%)	0	3	0	0	1	0	0
27.3.12	RNA.regulation of transcription.C3H zinc finger family	4 (0.57%)	0	0	2	0	1	0	1
27.3.80	RNA.regulation of transcription.zf-HD	4 (0.57%)	0	0	2	0	0	0	2
29.3	protein.targeting	4 (0.57%)	1	0	0	2	0	0	1
31.2	cell.division	4 (0.57%)	0	0	1	0	0	1	2
9.1.2	mitochondrial electron transport / ATP synthesis.NADH-DH.localisation not clear	4 (0.57%)	0	0	1	0	0	1	2
1.1.1.1	PS.lightreaction.photosystem II.LHC-II	3 (0.43%)	0	0	0	2	0	0	1
10.6.3	cell wall.degradation.pectate lyases and polygalacturonases	3 (0.43%)	0	0	0	3	0	0	0
11.3	lipid metabolism.Phospholipid synthesis	3 (0.43%)	1	1	0	0	0	1	0
16.2.1	secondary metabolism.phenylpropanoids.lignin biosynthesis	3 (0.43%)	1	0	0	0	2	0	0
17.1	hormone metabolism.abscisic acid	3 (0.43%)	0	0	1	0	0	0	2
17.2.2	hormone metabolism.auxin.signal transduction	3 (0.43%)	0	0	0	2	1	0	0
17.5	hormone metabolism.ethylene	3 (0.43%)	0	0	1	1	0	0	1
20.2.1	stress.abiotic.heat	3 (0.43%)	0	0	0	1	0	1	1
21.4	redox.glutaredoxins	3 (0.43%)	0	0	2	0	1	0	0
23.4	nucleotide metabolism.phosphotransfer and pyrophosphatases	3 (0.43%)	0	0	0	2	0	0	1
27.2	RNA.transcription	3 (0.43%)	0	0	0	0	1	0	2
27.3.3	RNA.regulation of transcription.AP2/EREBP, APETALA2/Ethylene-responsive element binding protein family	3 (0.43%)	0	0	0	0	1	0	2
27.3.37	RNA.regulation of transcription.AS2,Lateral Organ Boundaries Gene Family	3 (0.43%)	0	0	0	2	1	0	0
27.3.52	RNA.regulation of transcription.Global transcription factor group	3 (0.43%)	0	0	1	0	1	0	1
29.2	protein.synthesis	3 (0.43%)	0	0	0	0	1	0	2
29.3.4	protein.targeting.secretory pathway	3 (0.43%)	1	0	0	2	0	0	0
29.3.4.99	protein.targeting.secretory pathway.unspecified	3 (0.43%)	1	0	0	2	0	0	0
29.5.5	protein.degradation.serine protease	3 (0.43%)	0	0	0	1	1	0	1
30.11	signalling.light	3 (0.43%)	0	1	0	0	1	0	1
30.4.1	signalling.phosphinositides.phosphatidylinositol-4-phosphate 5-kinase	3 (0.43%)	0	1	1	1	0	0	0
31.4	cell.vesicle transport	3 (0.43%)	1	0	0	0	0	1	1
34.13	transport.peptides and oligopeptides	3 (0.43%)	0	1	0	0	1	1	0
34.99	transport.misc	3 (0.43%)	0	0	1	1	0	1	0
1.1.4	PS.lightreaction.ATP synthase	2 (0.28%)	0	0	0	0	1	0	1
7	OPP	2 (0.28%)	0	0	0	0	1	0	1
11.1	lipid metabolism.FA synthesis and FA elongation	2 (0.28%)	0	1	0	0	0	1	0
11.1.10	lipid metabolism.FA synthesis and FA elongation.beta ketoacyl CoA synthase	2 (0.28%)	0	1	0	0	0	1	0
15	metal handling	2 (0.28%)	0	0	0	1	1	0	0
15.2	metal handling.binding, chelation and storage	2 (0.28%)	0	0	0	1	1	0	0
16.2.1.10	secondary metabolism.phenylpropanoids.lignin biosynthesis.CAD	2 (0.28%)	0	0	0	0	2	0	0
17.1.3	hormone metabolism.abscisic acid.induced-regulated-responsive-activated	2 (0.28%)	0	0	0	0	0	0	2
17.5.1	hormone metabolism.ethylene.synthesis-degradation	2 (0.28%)	0	0	1	1	0	0	0
17.8	hormone metabolism.salicylic acid	2 (0.28%)	1	1	0	0	0	0	0
17.8.1	hormone metabolism.salicylic acid.synthesis-degradation	2 (0.28%)	1	1	0	0	0	0	0
20.2.3	stress.abiotic.drought/salt	2 (0.28%)	0	0	0	0	2	0	0
23.4.1	nucleotide metabolism.phosphotransfer and pyrophosphatases.adenylate kinase	2 (0.28%)	0	0	0	2	0	0	0
26.2	misc.UDP glucosyl and glucoronyl transferases	2 (0.28%)	2	0	0	0	0	0	0
26.21	misc.protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	2 (0.28%)	0	0	0	2	0	0	0
26.3	misc.gluco-, galacto- and mannosidases	2 (0.28%)	0	1	0	0	0	0	1
27.3.14	RNA.regulation of transcription.CCAAT box binding factor family, HAP2	2 (0.28%)	0	0	0	2	0	0	0
27.3.20	RNA.regulation of transcription.G2-like transcription factor family, GARP	2 (0.28%)	0	0	0	1	0	0	1
27.3.24	RNA.regulation of transcription.MADS box transcription factor family	2 (0.28%)	1	0	1	0	0	0	0
27.3.26	RNA.regulation of transcription.MYB-related transcription factor family	2 (0.28%)	0	0	2	0	0	0	0
27.3.27	RNA.regulation of transcription.NAC domain transcription factor family	2 (0.28%)	0	0	0	1	0	1	0
27.3.36	RNA.regulation of transcription.Argonaute	2 (0.28%)	0	0	0	0	1	0	1
27.3.40	RNA.regulation of transcription.Aux/IAA family	2 (0.28%)	0	0	2	0	0	0	0
27.3.63	RNA.regulation of transcription.PHD finger transcription factor	2 (0.28%)	0	0	0	1	0	0	1
27.3.67	RNA.regulation of transcription.putative transcription regulator	2 (0.28%)	0	0	0	0	1	0	1
27.3.9	RNA.regulation of transcription.C2C2(Zn) GATA transcription factor family	2 (0.28%)	0	0	0	2	0	0	0
28.2	DNA.repair	2 (0.28%)	0	0	0	0	2	0	0
29.2.1.2.1.19	protein.synthesis.ribosomal protein.eukaryotic.40S subunit.S19	2 (0.28%)	1	1	0	0	0	0	0
29.2.4	protein.synthesis.elongation	2 (0.28%)	0	0	0	0	1	0	1
29.5.11.4.1	protein.degradation.ubiquitin.E3.HECT	2 (0.28%)	0	0	0	0	1	0	1
29.5.11.5	protein.degradation.ubiquitin.ubiquitin protease	2 (0.28%)	1	0	0	0	0	1	0
3.1	minor CHO metabolism.raffinose family	2 (0.28%)	0	0	0	1	1	0	0
3.1.1	minor CHO metabolism.raffinose family.galactinol synthases	2 (0.28%)	0	0	0	1	1	0	0
3.1.1.2	minor CHO metabolism.raffinose family.galactinol synthases.putative	2 (0.28%)	0	0	0	1	1	0	0
30.2.17	signalling.receptor kinases.DUF 26	2 (0.28%)	0	0	0	1	1	0	0
30.4.2	signalling.phosphinositides.phosphatidylinositol 4-kinase	2 (0.28%)	0	0	0	2	0	0	0
7.1	OPP.oxidative PP	2 (0.28%)	0	0	0	0	1	0	1
30.5	signalling.G-proteins	2 (0.28%)	0	1	0	0	0	0	1
34.1	transport.p- and v-ATPases	2 (0.28%)	0	0	0	0	2	0	0
34.12	transport.metal	2 (0.28%)	0	0	1	0	1	0	0
34.15	transport.potassium	2 (0.28%)	0	0	0	2	0	0	0
7.1.3	OPP.oxidative PP.6-phosphogluconate dehydrogenase	2 (0.28%)	0	0	0	0	1	0	1
1.1.1.2	PS.lightreaction.photosystem II.PSII polypeptide subunits	1 (0.14%)	0	0	0	1	0	0	0
1.1.40	PS.lightreaction.cyclic electron flow-chlororespiration	1 (0.14%)	0	0	0	0	0	0	1
1.3	PS.calvin cycle	1 (0.14%)	0	0	1	0	0	0	0
1.3.6	PS.calvin cycle.aldolase	1 (0.14%)	0	0	1	0	0	0	0
2	major CHO metabolism	1 (0.14%)	0	0	0	0	0	0	1
10.6.1	cell wall.degradation.cellulases and beta -1,4-glucanases	1 (0.14%)	0	1	0	0	0	0	0
11.3.7	lipid metabolism.Phospholipid synthesis.cyclopropane-fatty-acyl-phospholipid synthase	1 (0.14%)	0	1	0	0	0	0	0
11.8	lipid metabolism.exotics(steroids, squalene etc)	1 (0.14%)	0	0	0	1	0	0	0
11.8.1	lipid metabolism.exotics (steroids, squalene etc).sphingolipids	1 (0.14%)	0	0	0	1	0	0	0
11.9	lipid metabolism.lipid degradation	1 (0.14%)	0	0	0	1	0	0	0
11.9.3	lipid metabolism.lipid degradation.lysophospholipases	1 (0.14%)	0	0	0	1	0	0	0
13	amino acid metabolism	1 (0.14%)	0	0	0	1	0	0	0
13.1	amino acid metabolism.synthesis	1 (0.14%)	0	0	0	1	0	0	0
13.1.5	amino acid metabolism.synthesis.serine-glycine-cysteine group	1 (0.14%)	0	0	0	1	0	0	0
13.1.5.3	amino acid metabolism.synthesis.serine-glycine-cysteine group.cysteine	1 (0.14%)	0	0	0	1	0	0	0
16.1.4	secondary metabolism.isoprenoids.carotenoids	1 (0.14%)	0	1	0	0	0	0	0
16.1.4.6	secondary metabolism.isoprenoids.carotenoids.carotenoid beta ring hydroxylase	1 (0.14%)	0	1	0	0	0	0	0
16.2.1.3	secondary metabolism.phenylpropanoids.lignin biosynthesis.4CL	1 (0.14%)	1	0	0	0	0	0	0
16.8.4	secondary metabolism.flavonoids.flavonols	1 (0.14%)	0	0	0	1	0	0	0
17.1.1	hormone metabolism.abscisic acid.synthesis-degradation	1 (0.14%)	0	0	1	0	0	0	0
2.2	major CHO metabolism.degradation	1 (0.14%)	0	0	0	0	0	0	1
16.8	secondary metabolism.flavonoids	1 (0.14%)	0	0	0	1	0	0	0
17.3	hormone metabolism.brassinosteroid	1 (0.14%)	1	0	0	0	0	0	0
17.3.2	hormone metabolism.brassinosteroid.signal transduction	1 (0.14%)	1	0	0	0	0	0	0
17.3.2.99	hormone metabolism.brassinosteroid.signal transduction.other	1 (0.14%)	1	0	0	0	0	0	0
17.5.1.1	hormone metabolism.ethylene.synthesis-degradation.1-aminocyclopropane-1-carboxylate synthase	1 (0.14%)	0	0	1	0	0	0	0
17.5.2	hormone metabolism.ethylene.signal transduction	1 (0.14%)	0	0	0	0	0	0	1
2.2.1	major CHO metabolism.degradation.sucrose	1 (0.14%)	0	0	0	0	0	0	1
2.2.1.3	major CHO metabolism.degradation.sucrose.invertases	1 (0.14%)	0	0	0	0	0	0	1
2.2.1.3.2	major CHO metabolism.degradation.sucrose.invertases.cell wall	1 (0.14%)	0	0	0	0	0	0	1
18	Co-factor and vitamine metabolism	1 (0.14%)	0	0	0	1	0	0	0
18.4	Co-factor and vitamine metabolism.pantothenate	1 (0.14%)	0	0	0	1	0	0	0
18.4.5	Co-factor and vitamine metabolism.pantothenate.pantothenate kinase (PANK)	1 (0.14%)	0	0	0	1	0	0	0
20.1	stress.biotic	1 (0.14%)	1	0	0	0	0	0	0
20.1.7	stress.biotic.PR-proteins	1 (0.14%)	1	0	0	0	0	0	0
21.1	redox.thioredoxin	1 (0.14%)	1	0	0	0	0	0	0
21.2	redox.ascorbate and glutathione	1 (0.14%)	0	0	0	1	0	0	0
21.2.1	redox.ascorbate and glutathione.ascorbate	1 (0.14%)	0	0	0	1	0	0	0
21.6	redox.dismutases and catalases	1 (0.14%)	0	0	0	1	0	0	0
23.3	nucleotide metabolism.salvage	1 (0.14%)	0	0	1	0	0	0	0
23.3.1	nucleotide metabolism.salvage.phosphoribosyltransferases	1 (0.14%)	0	0	1	0	0	0	0
23.3.1.1	nucleotide metabolism.salvage.phosphoribosyltransferases.aprt	1 (0.14%)	0	0	1	0	0	0	0
23.4.3	nucleotide metabolism.phosphotransfer and pyrophosphatases.uridylate kinase	1 (0.14%)	0	0	0	0	0	0	1
26.10	misc.cytochrome P450	1 (0.14%)	0	1	0	0	0	0	0
26.16	misc.myrosinases-lectin-jacalin	1 (0.14%)	0	1	0	0	0	0	0
26.19	misc.plastocyanin-like	1 (0.14%)	0	0	0	1	0	0	0
26.22	misc.short chain dehydrogenase/reductase (SDR)	1 (0.14%)	0	0	0	1	0	0	0
26.3.4	misc.gluco-, galacto- and mannosidases.endoglucanase	1 (0.14%)	0	1	0	0	0	0	0
26.4	misc.beta 1,3 glucan hydrolases	1 (0.14%)	0	0	0	1	0	0	0
26.9	misc.glutathione S transferases	1 (0.14%)	0	0	0	0	1	0	0
27.1.1	RNA.processing.splicing	1 (0.14%)	0	0	0	0	1	0	0
27.3.15	RNA.regulation of transcription.CCAAT box binding factor family, HAP3	1 (0.14%)	0	1	0	0	0	0	0
27.3.23	RNA.regulation of transcription.HSF,Heat-shock transcription factor family	1 (0.14%)	0	0	0	0	0	1	0
27.3.32	RNA.regulation of transcription.WRKY domain transcription factor family	1 (0.14%)	0	0	0	0	1	0	0
27.3.4	RNA.regulation of transcription.ARF, Auxin Response Factor family	1 (0.14%)	1	0	0	0	0	0	0
27.3.5	RNA.regulation of transcription.ARR	1 (0.14%)	0	1	0	0	0	0	0
27.3.50	RNA.regulation of transcription.General Transcription	1 (0.14%)	0	0	0	0	1	0	0
27.3.57	RNA.regulation of transcription.JUMONJI family	1 (0.14%)	0	0	0	1	0	0	0
27.3.66	RNA.regulation of transcription.Psudo ARR transcription factor family	1 (0.14%)	0	0	0	1	0	0	0
27.3.7	RNA.regulation of transcription.C2C2(Zn) CO-like, Constans-like zinc finger family	1 (0.14%)	0	0	0	1	0	0	0
29.2.1.1.1.2.23	protein.synthesis.ribosomal protein.prokaryotic.chloroplast.50S subunit.L23	1 (0.14%)	0	0	0	1	0	0	0
29.2.1.2.1.7	protein.synthesis.ribosomal protein.eukaryotic.40S subunit.S7	1 (0.14%)	0	0	0	0	0	0	1
29.2.3	protein.synthesis.initiation	1 (0.14%)	0	0	0	0	0	0	1
29.3.1	protein.targeting.nucleus	1 (0.14%)	0	0	0	0	0	0	1
29.4.1.52	protein.postranslational modification.kinase.receptor like cytoplasmatic kinase II	1 (0.14%)	1	0	0	0	0	0	0
29.5.11.3	protein.degradation.ubiquitin.E2	1 (0.14%)	0	0	0	0	0	0	1
29.5.11.4.3.3	protein.degradation.ubiquitin.E3.SCF.cullin	1 (0.14%)	0	0	0	1	0	0	0
30.2.20	signalling.receptor kinases.wheat LRK10 like	1 (0.14%)	0	0	0	1	0	0	0
30.2.24	signalling.receptor kinases.S-locus glycoprotein like	1 (0.14%)	0	0	0	0	0	0	1
30.2.26	signalling.receptor kinases.crinkly like	1 (0.14%)	0	0	0	0	0	0	1
33.30	development.multitarget	1 (0.14%)	0	0	0	0	0	0	1
33.3	development.squamosa promoter binding like (SPL)	1 (0.14%)	0	0	0	1	0	0	0
33.30.1	development.multitarget.target of rapamycin	1 (0.14%)	0	0	0	0	0	0	1
34.23	transport.hormones	1 (0.14%)	0	0	0	1	0	0	0
34.23.1	transport.hormones.auxin	1 (0.14%)	0	0	0	1	0	0	0