Gene Ontology terms associated with a binding site

Binding site
Motif_220
Name
ACIIPVPAL2
Description
ACII element found at -131 to -120 of bean PAL2 promoter; ACII element is required for vascular-specific gene expression; See also ACIPVPAL2 and ACIIIPVPAL2; Three AC-elements, which are possible Myb protein binding sites, together with a G-box, interact to direct the complex patterns of tissu-specific expression of pAL2 gene
#Associated genes
14
#Associated GO terms
246
 
Biological Process
Molecular Function
Cellular Component






Molecular Function (back to top)

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GODescription#Associated genes ath bra cme egr gma ptr ppe sly stu vvi
GO:0003824catalytic activity10 (71.43%)0110311111
GO:0016829lyase activity6 (42.86%)0110110110
GO:0016841ammonia-lyase activity5 (35.71%)0010110110
GO:0016840carbon-nitrogen lyase activity5 (35.71%)0010110110
GO:0045548phenylalanine ammonia-lyase activity5 (35.71%)0010110110
GO:0005488binding4 (28.57%)0001002001
GO:0016740transferase activity4 (28.57%)0000201001
GO:1901363heterocyclic compound binding3 (21.43%)0001002000
GO:0097159organic cyclic compound binding3 (21.43%)0001002000
GO:00038663-phosphoshikimate 1-carboxyvinyltransferase activity2 (14.29%)0000200000
GO:0003677DNA binding2 (14.29%)0001001000
GO:0043167ion binding2 (14.29%)0000001001
GO:0003676nucleic acid binding2 (14.29%)0001001000
GO:0016765transferase activity, transferring alkyl or aryl (other than methyl) groups2 (14.29%)0000200000
GO:0005524ATP binding1 (7.14%)0000001000
GO:0008171O-methyltransferase activity1 (7.14%)0000000001
GO:0008757S-adenosylmethionine-dependent methyltransferase activity1 (7.14%)0000000001
GO:0030554adenyl nucleotide binding1 (7.14%)0000001000
GO:0032559adenyl ribonucleotide binding1 (7.14%)0000001000
GO:0043168anion binding1 (7.14%)0000001000
GO:0042409caffeoyl-CoA O-methyltransferase activity1 (7.14%)0000000001
GO:0097367carbohydrate derivative binding1 (7.14%)0000001000
GO:0016835carbon-oxygen lyase activity1 (7.14%)0100000000
GO:0016838carbon-oxygen lyase activity, acting on phosphates1 (7.14%)0100000000
GO:0043169cation binding1 (7.14%)0000000001
GO:0004107chorismate synthase activity1 (7.14%)0100000000
GO:0004397histidine ammonia-lyase activity1 (7.14%)0000000100
GO:0016301kinase activity1 (7.14%)0000001000
GO:0046872metal ion binding1 (7.14%)0000000001
GO:0008168methyltransferase activity1 (7.14%)0000000001
GO:0001071nucleic acid binding transcription factor activity1 (7.14%)0000001000
GO:0001882nucleoside binding1 (7.14%)0000001000
GO:1901265nucleoside phosphate binding1 (7.14%)0000001000
GO:0000166nucleotide binding1 (7.14%)0000001000
GO:0016773phosphotransferase activity, alcohol group as acceptor1 (7.14%)0000001000
GO:0005515protein binding1 (7.14%)0000001000
GO:0004672protein kinase activity1 (7.14%)0000001000
GO:0004674protein serine/threonine kinase activity1 (7.14%)0000001000
GO:0001883purine nucleoside binding1 (7.14%)0000001000
GO:0017076purine nucleotide binding1 (7.14%)0000001000
GO:0032550purine ribonucleoside binding1 (7.14%)0000001000
GO:0035639purine ribonucleoside triphosphate binding1 (7.14%)0000001000
GO:0032555purine ribonucleotide binding1 (7.14%)0000001000
GO:0032549ribonucleoside binding1 (7.14%)0000001000
GO:0032553ribonucleotide binding1 (7.14%)0000001000
GO:0003700sequence-specific DNA binding transcription factor activity1 (7.14%)0000001000
GO:0036094small molecule binding1 (7.14%)0000001000
GO:0016741transferase activity, transferring one-carbon groups1 (7.14%)0000000001
GO:0016772transferase activity, transferring phosphorus-containing groups1 (7.14%)0000001000

Biological Process (back to top)

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GODescription#Associated genes ath bra cme egr gma ptr ppe sly stu vvi
GO:0008152metabolic process14 (100.00%)0121313111
GO:0071704organic substance metabolic process14 (100.00%)0121313111
GO:0044238primary metabolic process14 (100.00%)0121313111
GO:0044237cellular metabolic process13 (92.86%)0111313111
GO:0009987cellular process13 (92.86%)0111313111
GO:0019438aromatic compound biosynthetic process12 (85.71%)0111312111
GO:0009058biosynthetic process12 (85.71%)0111312111
GO:0006725cellular aromatic compound metabolic process12 (85.71%)0111312111
GO:0044249cellular biosynthetic process12 (85.71%)0111312111
GO:0006807nitrogen compound metabolic process12 (85.71%)0111312111
GO:1901362organic cyclic compound biosynthetic process12 (85.71%)0111312111
GO:1901360organic cyclic compound metabolic process12 (85.71%)0111312111
GO:1901576organic substance biosynthetic process12 (85.71%)0111312111
GO:0019752carboxylic acid metabolic process9 (64.29%)0110310111
GO:0006520cellular amino acid metabolic process9 (64.29%)0110310111
GO:0006082organic acid metabolic process9 (64.29%)0110310111
GO:1901564organonitrogen compound metabolic process9 (64.29%)0110310111
GO:0043436oxoacid metabolic process9 (64.29%)0110310111
GO:0044711single-organism biosynthetic process9 (64.29%)0110310111
GO:0044763single-organism cellular process9 (64.29%)0110310111
GO:0044710single-organism metabolic process9 (64.29%)0110310111
GO:0044699single-organism process9 (64.29%)0110310111
GO:0044281small molecule metabolic process9 (64.29%)0110310111
GO:0009072aromatic amino acid family metabolic process8 (57.14%)0110310110
GO:0032787monocarboxylic acid metabolic process8 (57.14%)0110310110
GO:1901615organic hydroxy compound metabolic process8 (57.14%)0110310110
GO:1901605alpha-amino acid metabolic process6 (42.86%)0010110111
GO:0009056catabolic process6 (42.86%)0010110111
GO:0009808lignin metabolic process6 (42.86%)0010110111
GO:1901575organic substance catabolic process6 (42.86%)0010110111
GO:1901565organonitrogen compound catabolic process6 (42.86%)0010110111
GO:0009699phenylpropanoid biosynthetic process6 (42.86%)0010110111
GO:0009698phenylpropanoid metabolic process6 (42.86%)0010110111
GO:0042221response to chemical6 (42.86%)0010110111
GO:0010035response to inorganic substance6 (42.86%)0010110111
GO:0050896response to stimulus6 (42.86%)0010110111
GO:0006950response to stress6 (42.86%)0010110111
GO:0009611response to wounding6 (42.86%)0010110111
GO:0019748secondary metabolic process6 (42.86%)0010110111
GO:0044550secondary metabolite biosynthetic process6 (42.86%)0010110111
GO:0006559L-phenylalanine catabolic process5 (35.71%)0010110110
GO:0006558L-phenylalanine metabolic process5 (35.71%)0010110110
GO:1901606alpha-amino acid catabolic process5 (35.71%)0010110110
GO:0048856anatomical structure development5 (35.71%)0010110110
GO:0009074aromatic amino acid family catabolic process5 (35.71%)0010110110
GO:0019439aromatic compound catabolic process5 (35.71%)0010110110
GO:0042537benzene-containing compound metabolic process5 (35.71%)0010110110
GO:0046394carboxylic acid biosynthetic process5 (35.71%)0100200101
GO:0046395carboxylic acid catabolic process5 (35.71%)0010110110
GO:0009063cellular amino acid catabolic process5 (35.71%)0010110110
GO:0044248cellular catabolic process5 (35.71%)0010110110
GO:0006952defense response5 (35.71%)0010110110
GO:0032502developmental process5 (35.71%)0010110110
GO:0009819drought recovery5 (35.71%)0010110110
GO:1902222erythrose 4-phosphate/phosphoenolpyruvate family amino acid catabolic process5 (35.71%)0010110110
GO:1902221erythrose 4-phosphate/phosphoenolpyruvate family amino acid metabolic process5 (35.71%)0010110110
GO:0048229gametophyte development5 (35.71%)0010110110
GO:0046274lignin catabolic process5 (35.71%)0010110110
GO:0043170macromolecule metabolic process5 (35.71%)0011003000
GO:0072329monocarboxylic acid catabolic process5 (35.71%)0010110110
GO:0007275multicellular organismal development5 (35.71%)0010110110
GO:0032501multicellular organismal process5 (35.71%)0010110110
GO:0016053organic acid biosynthetic process5 (35.71%)0100200101
GO:0016054organic acid catabolic process5 (35.71%)0010110110
GO:1901361organic cyclic compound catabolic process5 (35.71%)0010110110
GO:1901616organic hydroxy compound catabolic process5 (35.71%)0010110110
GO:0046271phenylpropanoid catabolic process5 (35.71%)0010110110
GO:0009555pollen development5 (35.71%)0010110110
GO:0009411response to UV5 (35.71%)0010110110
GO:0010224response to UV-B5 (35.71%)0010110110
GO:0009628response to abiotic stimulus5 (35.71%)0010110110
GO:0080167response to karrikin5 (35.71%)0010110110
GO:0009416response to light stimulus5 (35.71%)0010110110
GO:0006979response to oxidative stress5 (35.71%)0010110110
GO:1901700response to oxygen-containing compound5 (35.71%)0010110110
GO:0009314response to radiation5 (35.71%)0010110110
GO:0009415response to water5 (35.71%)0010110110
GO:0009414response to water deprivation5 (35.71%)0010110110
GO:0046244salicylic acid catabolic process5 (35.71%)0010110110
GO:0009696salicylic acid metabolic process5 (35.71%)0010110110
GO:0044707single-multicellular organism process5 (35.71%)0010110110
GO:0044712single-organism catabolic process5 (35.71%)0010110110
GO:0044767single-organism developmental process5 (35.71%)0010110110
GO:0044283small molecule biosynthetic process5 (35.71%)0100200101
GO:0044282small molecule catabolic process5 (35.71%)0010110110
GO:0065007biological regulation4 (28.57%)0001002001
GO:0008652cellular amino acid biosynthetic process4 (28.57%)0100200001
GO:0044260cellular macromolecule metabolic process4 (28.57%)0001003000
GO:0034641cellular nitrogen compound metabolic process4 (28.57%)0001002001
GO:0018130heterocycle biosynthetic process4 (28.57%)0001002001
GO:0046483heterocycle metabolic process4 (28.57%)0001002001
GO:0072330monocarboxylic acid biosynthetic process4 (28.57%)0100200100
GO:1901566organonitrogen compound biosynthetic process4 (28.57%)0100200001
GO:0050789regulation of biological process4 (28.57%)0001002001
GO:0009889regulation of biosynthetic process4 (28.57%)0001002001
GO:0019222regulation of metabolic process4 (28.57%)0001002001
GO:0080090regulation of primary metabolic process4 (28.57%)0001002001
GO:0032774RNA biosynthetic process3 (21.43%)0001002000
GO:0016070RNA metabolic process3 (21.43%)0001002000
GO:0009073aromatic amino acid family biosynthetic process3 (21.43%)0100200000
GO:0034645cellular macromolecule biosynthetic process3 (21.43%)0001002000
GO:0006575cellular modified amino acid metabolic process3 (21.43%)0000200001
GO:0044271cellular nitrogen compound biosynthetic process3 (21.43%)0001002000
GO:0009423chorismate biosynthetic process3 (21.43%)0100200000
GO:0046417chorismate metabolic process3 (21.43%)0100200000
GO:0043650dicarboxylic acid biosynthetic process3 (21.43%)0100200000
GO:0043648dicarboxylic acid metabolic process3 (21.43%)0100200000
GO:0010467gene expression3 (21.43%)0001002000
GO:0009059macromolecule biosynthetic process3 (21.43%)0001002000
GO:0090304nucleic acid metabolic process3 (21.43%)0001002000
GO:0034654nucleobase-containing compound biosynthetic process3 (21.43%)0001002000
GO:0006139nucleobase-containing compound metabolic process3 (21.43%)0001002000
GO:1901617organic hydroxy compound biosynthetic process3 (21.43%)0100200000
GO:0006793phosphorus metabolic process3 (21.43%)0000201000
GO:2001141regulation of RNA biosynthetic process3 (21.43%)0001002000
GO:0051252regulation of RNA metabolic process3 (21.43%)0001002000
GO:0031326regulation of cellular biosynthetic process3 (21.43%)0001002000
GO:2000112regulation of cellular macromolecule biosynthetic process3 (21.43%)0001002000
GO:0031323regulation of cellular metabolic process3 (21.43%)0001002000
GO:0050794regulation of cellular process3 (21.43%)0001002000
GO:0010468regulation of gene expression3 (21.43%)0001002000
GO:0010556regulation of macromolecule biosynthetic process3 (21.43%)0001002000
GO:0060255regulation of macromolecule metabolic process3 (21.43%)0001002000
GO:0051171regulation of nitrogen compound metabolic process3 (21.43%)0001002000
GO:0019219regulation of nucleobase-containing compound metabolic process3 (21.43%)0001002000
GO:0006355regulation of transcription, DNA-dependent3 (21.43%)0001002000
GO:0033587shikimate biosynthetic process3 (21.43%)0100200000
GO:0019632shikimate metabolic process3 (21.43%)0100200000
GO:0006351transcription, DNA-templated3 (21.43%)0001002000
GO:0018920glyphosate metabolic process2 (14.29%)0000200000
GO:0019538protein metabolic process2 (14.29%)0010001000
GO:1901607alpha-amino acid biosynthetic process1 (7.14%)0000000001
GO:0009310amine catabolic process1 (7.14%)0000000001
GO:0009308amine metabolic process1 (7.14%)0000000001
GO:0044106cellular amine metabolic process1 (7.14%)0000000001
GO:0042402cellular biogenic amine catabolic process1 (7.14%)0000000001
GO:0006576cellular biogenic amine metabolic process1 (7.14%)0000000001
GO:0042398cellular modified amino acid biosynthetic process1 (7.14%)0000000001
GO:0044267cellular protein metabolic process1 (7.14%)0000001000
GO:0006464cellular protein modification process1 (7.14%)0000001000
GO:0009800cinnamic acid biosynthetic process1 (7.14%)0000000100
GO:0009803cinnamic acid metabolic process1 (7.14%)0000000100
GO:0009805coumarin biosynthetic process1 (7.14%)0000000001
GO:0009804coumarin metabolic process1 (7.14%)0000000001
GO:0019344cysteine biosynthetic process1 (7.14%)0000000001
GO:0006534cysteine metabolic process1 (7.14%)0000000001
GO:0009813flavonoid biosynthetic process1 (7.14%)0000000001
GO:0009812flavonoid metabolic process1 (7.14%)0000000001
GO:0009809lignin biosynthetic process1 (7.14%)0000000001
GO:0043412macromolecule modification1 (7.14%)0000001000
GO:0006796phosphate-containing compound metabolic process1 (7.14%)0000001000
GO:0016310phosphorylation1 (7.14%)0000001000
GO:0006598polyamine catabolic process1 (7.14%)0000000001
GO:0006595polyamine metabolic process1 (7.14%)0000000001
GO:0048518positive regulation of biological process1 (7.14%)0000000001
GO:0009891positive regulation of biosynthetic process1 (7.14%)0000000001
GO:0009963positive regulation of flavonoid biosynthetic process1 (7.14%)0000000001
GO:0009893positive regulation of metabolic process1 (7.14%)0000000001
GO:0036211protein modification process1 (7.14%)0000001000
GO:0006468protein phosphorylation1 (7.14%)0000001000
GO:0009962regulation of flavonoid biosynthetic process1 (7.14%)0000000001
GO:0046686response to cadmium ion1 (7.14%)0000000001
GO:0010038response to metal ion1 (7.14%)0000000001
GO:0009070serine family amino acid biosynthetic process1 (7.14%)0000000001
GO:0009069serine family amino acid metabolic process1 (7.14%)0000000001
GO:0000097sulfur amino acid biosynthetic process1 (7.14%)0000000001
GO:0000096sulfur amino acid metabolic process1 (7.14%)0000000001
GO:0044272sulfur compound biosynthetic process1 (7.14%)0000000001
GO:0006790sulfur compound metabolic process1 (7.14%)0000000001

Cellular Component (back to top)

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GODescription#Associated genes ath bra cme egr gma ptr ppe sly stu vvi
GO:0005623cell9 (64.29%)0110310111
GO:0044464cell part9 (64.29%)0110310111
GO:0005737cytoplasm9 (64.29%)0110310111
GO:0044444cytoplasmic part9 (64.29%)0110310111
GO:0005622intracellular9 (64.29%)0110310111
GO:0044424intracellular part9 (64.29%)0110310111
GO:0005829cytosol6 (42.86%)0010110111
GO:0043231intracellular membrane-bounded organelle4 (28.57%)0100200001
GO:0043229intracellular organelle4 (28.57%)0100200001
GO:0043227membrane-bounded organelle4 (28.57%)0100200001
GO:0043226organelle4 (28.57%)0100200001
GO:0009507chloroplast3 (21.43%)0100200000
GO:0044434chloroplast part3 (21.43%)0100200000
GO:0009570chloroplast stroma3 (21.43%)0100200000
GO:0044446intracellular organelle part3 (21.43%)0100200000
GO:0044422organelle part3 (21.43%)0100200000
GO:0009536plastid3 (21.43%)0100200000
GO:0044435plastid part3 (21.43%)0100200000
GO:0009532plastid stroma3 (21.43%)0100200000
GO:0005634nucleus2 (14.29%)0100000001
GO:0043232intracellular non-membrane-bounded organelle1 (7.14%)0100000000
GO:0070013intracellular organelle lumen1 (7.14%)0100000000
GO:0031974membrane-enclosed lumen1 (7.14%)0100000000
GO:0043228non-membrane-bounded organelle1 (7.14%)0100000000
GO:0031981nuclear lumen1 (7.14%)0100000000
GO:0044428nuclear part1 (7.14%)0100000000
GO:0005730nucleolus1 (7.14%)0100000000
GO:0043233organelle lumen1 (7.14%)0100000000