PLAZA 3.0 Dicots : Binding Sites

MapMan terms associated with a binding site

Binding site: Motif_188
Name: CDA1ATCAB2
Description: CDA-1 (CAB2 DET1-associated factor 1) binding site in DtRE (dark response element) f of chlorophyll a/b-binding protein2 (CAB2) gene in Arabidopsis

#Associated genes: 349
#Associated MapMan terms: 140

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MapMan	Description	#Associated genes	ath	bra	egr	gma	ptr	ppe	sly	vvi
27	RNA	71 (20.34%)	4	7	6	24	14	10	1	5
27.3	RNA.regulation of transcription	67 (19.20%)	4	7	5	22	13	10	1	5
29	protein	28 (8.02%)	1	1	2	7	3	7	0	7
30	signalling	23 (6.59%)	1	1	4	8	4	1	2	2
29.4	protein.postranslational modification	20 (5.73%)	0	1	1	6	3	5	0	4
31	cell	17 (4.87%)	0	3	2	4	4	3	0	1
26	misc	15 (4.30%)	4	2	0	5	1	1	0	2
33	development	10 (2.87%)	0	0	1	2	1	2	0	4
30.2	signalling.receptor kinases	9 (2.58%)	0	1	4	2	1	1	0	0
31.1	cell.organisation	9 (2.58%)	0	0	2	2	2	2	0	1
33.99	development.unspecified	8 (2.29%)	0	0	1	1	1	2	0	3
27.3.22	RNA.regulation of transcription.HB,Homeobox transcription factor family	7 (2.01%)	0	0	2	1	4	0	0	0
29.4.1	protein.postranslational modification.kinase	7 (2.01%)	0	0	1	3	1	1	0	1
29.4.1.57	protein.postranslational modification.kinase.receptor like cytoplasmatic kinase VII	7 (2.01%)	0	0	1	3	1	1	0	1
34	transport	7 (2.01%)	1	0	0	0	3	2	0	1
20	stress	6 (1.72%)	0	0	0	1	0	2	2	1
26.17	misc.dynamin	6 (1.72%)	0	0	0	2	1	1	0	2
27.3.11	RNA.regulation of transcription.C2H2 zinc finger family	5 (1.43%)	3	0	0	1	0	1	0	0
27.3.3	RNA.regulation of transcription.AP2/EREBP, APETALA2/Ethylene-responsive element binding protein family	5 (1.43%)	0	0	0	4	1	0	0	0
28	DNA	5 (1.43%)	0	0	1	2	1	0	0	1
29.3	protein.targeting	5 (1.43%)	1	0	1	0	0	1	0	2
29.5.11.4.2	protein.degradation.ubiquitin.E3.RING	5 (1.43%)	0	0	2	0	0	2	0	1
30.2.11	signalling.receptor kinases.leucine rich repeat XI	5 (1.43%)	0	0	1	2	1	1	0	0
9	mitochondrial electron transport / ATP synthesis	4 (1.15%)	0	0	0	1	1	1	1	0
20.2	stress.abiotic	4 (1.15%)	0	0	0	1	0	0	2	1
26.7	misc.oxidases - copper, flavone etc	4 (1.15%)	3	1	0	0	0	0	0	0
27.3.20	RNA.regulation of transcription.G2-like transcription factor family, GARP	4 (1.15%)	0	0	0	4	0	0	0	0
27.3.40	RNA.regulation of transcription.Aux/IAA family	4 (1.15%)	0	1	0	0	2	1	0	0
27.3.67	RNA.regulation of transcription.putative transcription regulator	4 (1.15%)	0	1	1	0	0	2	0	0
27.3.99	RNA.regulation of transcription.unclassified	4 (1.15%)	0	1	0	1	1	1	0	0
27.4	RNA.RNA binding	4 (1.15%)	0	0	1	2	1	0	0	0
28.1	DNA.synthesis/chromatin structure	4 (1.15%)	0	0	0	2	1	0	0	1
29.3.4	protein.targeting.secretory pathway	4 (1.15%)	0	0	1	0	0	1	0	2
29.3.4.3	protein.targeting.secretory pathway.vacuole	4 (1.15%)	0	0	1	0	0	1	0	2
30.3	signalling.calcium	4 (1.15%)	0	0	0	0	1	0	2	1
31.2	cell.division	4 (1.15%)	0	1	0	2	0	1	0	0
31.2.5	cell.division.plastid	4 (1.15%)	0	1	0	2	0	1	0	0
34.16	transport.ABC transporters and multidrug resistance systems	4 (1.15%)	1	0	0	0	2	0	0	1
1	PS	3 (0.86%)	0	1	0	0	0	0	1	1
1.1	PS.lightreaction	3 (0.86%)	0	1	0	0	0	0	1	1
10	cell wall	3 (0.86%)	1	2	0	0	0	0	0	0
10.7	cell wall.modification	3 (0.86%)	1	2	0	0	0	0	0	0
17	hormone metabolism	3 (0.86%)	0	0	0	1	0	2	0	0
27.3.21	RNA.regulation of transcription.GRAS transcription factor family	3 (0.86%)	0	0	0	1	1	1	0	0
27.3.25	RNA.regulation of transcription.MYB domain transcription factor family	3 (0.86%)	1	0	0	0	1	0	0	1
27.3.8	RNA.regulation of transcription.C2C2(Zn) DOF zinc finger family	3 (0.86%)	0	1	0	2	0	0	0	0
28.1.3	DNA.synthesis/chromatin structure.histone	3 (0.86%)	0	0	0	2	1	0	0	0
30.11	signalling.light	3 (0.86%)	1	0	0	2	0	0	0	0
30.2.17	signalling.receptor kinases.DUF 26	3 (0.86%)	0	1	2	0	0	0	0	0
9.1	mitochondrial electron transport / ATP synthesis.NADH-DH	3 (0.86%)	0	0	0	1	1	1	0	0
30.5	signalling.G-proteins	3 (0.86%)	0	0	0	0	2	0	0	1
9.1.2	mitochondrial electron transport / ATP synthesis.NADH-DH.localisation not clear	3 (0.86%)	0	0	0	1	1	1	0	0
1.1.1	PS.lightreaction.photosystem II	2 (0.57%)	0	1	0	0	0	0	1	0
1.1.1.1	PS.lightreaction.photosystem II.LHC-II	2 (0.57%)	0	1	0	0	0	0	1	0
13	amino acid metabolism	2 (0.57%)	0	0	1	0	1	0	0	0
17.2	hormone metabolism.auxin	2 (0.57%)	0	0	0	1	0	1	0	0
19	tetrapyrrole synthesis	2 (0.57%)	0	0	0	0	2	0	0	0
19.2	tetrapyrrole synthesis.glu-tRNA reductase	2 (0.57%)	0	0	0	0	2	0	0	0
20.1	stress.biotic	2 (0.57%)	0	0	0	0	0	2	0	0
20.2.99	stress.abiotic.unspecified	2 (0.57%)	0	0	0	1	0	0	1	0
21	redox	2 (0.57%)	0	0	0	1	1	0	0	0
27.3.29	RNA.regulation of transcription.TCP transcription factor family	2 (0.57%)	0	0	0	2	0	0	0	0
27.3.32	RNA.regulation of transcription.WRKY domain transcription factor family	2 (0.57%)	0	0	0	1	0	1	0	0
27.3.36	RNA.regulation of transcription.Argonaute	2 (0.57%)	0	1	1	0	0	0	0	0
27.3.37	RNA.regulation of transcription.AS2,Lateral Organ Boundaries Gene Family	2 (0.57%)	0	0	0	2	0	0	0	0
27.3.4	RNA.regulation of transcription.ARF, Auxin Response Factor family	2 (0.57%)	0	0	0	0	0	1	0	1
27.3.57	RNA.regulation of transcription.JUMONJI family	2 (0.57%)	0	0	0	0	2	0	0	0
29.5	protein.degradation	2 (0.57%)	0	0	0	1	0	1	0	0
30.4	signalling.phosphinositides	2 (0.57%)	0	0	0	2	0	0	0	0
30.4.2	signalling.phosphinositides.phosphatidylinositol 4-kinase	2 (0.57%)	0	0	0	2	0	0	0	0
30.7	signalling.14-3-3 proteins	2 (0.57%)	0	0	0	2	0	0	0	0
31.3	cell.cycle	2 (0.57%)	0	0	0	0	2	0	0	0
31.4	cell.vesicle transport	2 (0.57%)	0	2	0	0	0	0	0	0
1.1.3	PS.lightreaction.cytochrome b6/f	1 (0.29%)	0	0	0	0	0	0	0	1
3	minor CHO metabolism	1 (0.29%)	0	0	0	0	0	0	0	1
7	OPP	1 (0.29%)	0	0	0	0	0	1	0	0
13.1	amino acid metabolism.synthesis	1 (0.29%)	0	0	0	0	1	0	0	0
13.1.5	amino acid metabolism.synthesis.serine-glycine-cysteine group	1 (0.29%)	0	0	0	0	1	0	0	0
13.1.5.3	amino acid metabolism.synthesis.serine-glycine-cysteine group.cysteine	1 (0.29%)	0	0	0	0	1	0	0	0
13.2	amino acid metabolism.degradation	1 (0.29%)	0	0	1	0	0	0	0	0
13.2.5	amino acid metabolism.degradation.serine-glycine-cysteine group	1 (0.29%)	0	0	1	0	0	0	0	0
13.2.5.2	amino acid metabolism.degradation.serine-glycine-cysteine group.glycine	1 (0.29%)	0	0	1	0	0	0	0	0
15	metal handling	1 (0.29%)	0	0	0	0	0	1	0	0
15.3	metal handling.regulation	1 (0.29%)	0	0	0	0	0	1	0	0
16	secondary metabolism	1 (0.29%)	0	0	1	0	0	0	0	0
16.2	secondary metabolism.phenylpropanoids	1 (0.29%)	0	0	1	0	0	0	0	0
17.2.2	hormone metabolism.auxin.signal transduction	1 (0.29%)	0	0	0	1	0	0	0	0
17.2.3	hormone metabolism.auxin.induced-regulated-responsive-activated	1 (0.29%)	0	0	0	0	0	1	0	0
17.7	hormone metabolism.jasmonate	1 (0.29%)	0	0	0	0	0	1	0	0
17.7.1	hormone metabolism.jasmonate.synthesis-degradation	1 (0.29%)	0	0	0	0	0	1	0	0
17.7.1.3	hormone metabolism.jasmonate.synthesis-degradation.allene oxidase synthase	1 (0.29%)	0	0	0	0	0	1	0	0
20.1.1	stress.biotic.respiratory burst	1 (0.29%)	0	0	0	0	0	1	0	0
20.2.1	stress.abiotic.heat	1 (0.29%)	0	0	0	0	0	0	0	1
20.2.3	stress.abiotic.drought/salt	1 (0.29%)	0	0	0	0	0	0	1	0
3.5	minor CHO metabolism.others	1 (0.29%)	0	0	0	0	0	0	0	1
7.1	OPP.oxidative PP	1 (0.29%)	0	0	0	0	0	1	0	0
9.7	mitochondrial electron transport / ATP synthesis.cytochrome c oxidase	1 (0.29%)	0	0	0	0	0	0	1	0
21.2	redox.ascorbate and glutathione	1 (0.29%)	0	0	0	0	1	0	0	0
21.4	redox.glutaredoxins	1 (0.29%)	0	0	0	1	0	0	0	0
7.1.2	OPP.oxidative PP.6-phosphogluconolactonase	1 (0.29%)	0	0	0	0	0	1	0	0
23	nucleotide metabolism	1 (0.29%)	0	0	0	0	0	1	0	0
23.3	nucleotide metabolism.salvage	1 (0.29%)	0	0	0	0	0	1	0	0
23.3.2	nucleotide metabolism.salvage.nucleoside kinases	1 (0.29%)	0	0	0	0	0	1	0	0
23.3.2.3	nucleotide metabolism.salvage.nucleoside kinases.thymidine kinase	1 (0.29%)	0	0	0	0	0	1	0	0
26.11	misc.alcohol dehydrogenases	1 (0.29%)	0	1	0	0	0	0	0	0
26.13	misc.acid and other phosphatases	1 (0.29%)	1	0	0	0	0	0	0	0
26.2	misc.UDP glucosyl and glucoronyl transferases	1 (0.29%)	0	0	0	1	0	0	0	0
26.4	misc.beta 1,3 glucan hydrolases	1 (0.29%)	0	0	0	1	0	0	0	0
26.4.1	misc.beta 1,3 glucan hydrolases.glucan endo-1,3-beta-glucosidase	1 (0.29%)	0	0	0	1	0	0	0	0
26.5	misc.acyl transferases	1 (0.29%)	0	0	0	1	0	0	0	0
27.3.1	RNA.regulation of transcription.ABI3/VP1-related B3-domain-containing transcription factor family	1 (0.29%)	0	0	0	0	0	0	0	1
27.3.17	RNA.regulation of transcription.CPP(Zn),CPP1-related transcription factor family	1 (0.29%)	0	1	0	0	0	0	0	0
27.3.26	RNA.regulation of transcription.MYB-related transcription factor family	1 (0.29%)	0	0	0	1	0	0	0	0
27.3.30	RNA.regulation of transcription.Trihelix, Triple-Helix transcription factor family	1 (0.29%)	0	0	0	0	0	0	0	1
27.3.31	RNA.regulation of transcription.TUB transcription factor family	1 (0.29%)	0	0	0	0	0	1	0	0
27.3.35	RNA.regulation of transcription.bZIP transcription factor family	1 (0.29%)	0	0	0	0	1	0	0	0
27.3.52	RNA.regulation of transcription.Global transcription factor group	1 (0.29%)	0	0	0	0	0	0	1	0
27.3.58	RNA.regulation of transcription.LUG	1 (0.29%)	0	0	0	1	0	0	0	0
27.3.6	RNA.regulation of transcription.bHLH,Basic Helix-Loop-Helix family	1 (0.29%)	0	0	0	1	0	0	0	0
27.3.60	RNA.regulation of transcription.NIN-like bZIP-related family	1 (0.29%)	0	0	0	0	0	1	0	0
27.3.64	RNA.regulation of transcription.PHOR1	1 (0.29%)	0	0	1	0	0	0	0	0
27.3.69	RNA.regulation of transcription.SET-domain transcriptional regulator family	1 (0.29%)	0	1	0	0	0	0	0	0
27.3.9	RNA.regulation of transcription.C2C2(Zn) GATA transcription factor family	1 (0.29%)	0	0	0	0	0	0	0	1
28.1.3.2	DNA.synthesis/chromatin structure.histone.core	1 (0.29%)	0	0	0	0	1	0	0	0
28.1.3.2.3	DNA.synthesis/chromatin structure.histone.core.H3	1 (0.29%)	0	0	0	0	1	0	0	0
28.2	DNA.repair	1 (0.29%)	0	0	1	0	0	0	0	0
29.2	protein.synthesis	1 (0.29%)	0	0	0	0	0	0	0	1
29.2.1.1.2.1.3	protein.synthesis.ribosomal protein.prokaryotic.mitochondrion.30S subunit.S3	1 (0.29%)	0	0	0	0	0	0	1	0
29.2.1.2.2.10	protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L10	1 (0.29%)	0	0	0	0	1	0	0	0
29.2.3	protein.synthesis.initiation	1 (0.29%)	0	0	0	0	0	0	0	1
29.3.3	protein.targeting.chloroplast	1 (0.29%)	1	0	0	0	0	0	0	0
29.5.11	protein.degradation.ubiquitin	1 (0.29%)	0	0	0	1	0	0	0	0
29.5.11.3	protein.degradation.ubiquitin.E2	1 (0.29%)	0	0	0	1	0	0	0	0
29.5.4	protein.degradation.aspartate protease	1 (0.29%)	0	0	0	0	0	1	0	0
30.2.3	signalling.receptor kinases.leucine rich repeat III	1 (0.29%)	0	0	1	0	0	0	0	0
33.1	development.storage proteins	1 (0.29%)	0	0	0	1	0	0	0	0
33.3	development.squamosa promoter binding like (SPL)	1 (0.29%)	0	0	0	0	0	0	0	1
34.12	transport.metal	1 (0.29%)	0	0	0	0	0	1	0	0
34.3	transport.amino acids	1 (0.29%)	0	0	0	0	1	0	0	0
34.6	transport.sulphate	1 (0.29%)	0	0	0	0	0	1	0	0