PLAZA 3.0 Dicots : Binding Sites

MapMan terms associated with a binding site

Binding site: Motif_180
Name: AGL2 binding site motif
Description: Binding consensus sequence of Arabidopsis AGL2 (AGAMOUS-like 2); AGL2 contains MADS domain; AGL2 binds DNA as a dimer

#Associated genes: 128
#Associated MapMan terms: 75

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MapMan	Description	#Associated genes	ath	bra	egr	gma	ptr	ppe	sly	vvi
27	RNA	35 (27.34%)	3	4	2	9	7	4	3	3
27.3	RNA.regulation of transcription	31 (24.22%)	1	3	2	9	7	4	3	2
29	protein	8 (6.25%)	0	0	1	3	0	2	1	1
17	hormone metabolism	7 (5.47%)	1	1	0	3	1	1	0	0
26	misc	7 (5.47%)	0	3	0	0	1	2	0	1
27.3.24	RNA.regulation of transcription.MADS box transcription factor family	7 (5.47%)	0	1	0	2	1	2	0	1
29.4	protein.postranslational modification	7 (5.47%)	0	0	1	3	0	1	1	1
30	signalling	7 (5.47%)	1	2	1	1	1	0	0	1
33	development	6 (4.69%)	2	0	0	0	0	1	1	2
33.99	development.unspecified	6 (4.69%)	2	0	0	0	0	1	1	2
27.3.99	RNA.regulation of transcription.unclassified	5 (3.91%)	0	0	1	0	1	1	1	1
17.2	hormone metabolism.auxin	4 (3.13%)	1	1	0	1	1	0	0	0
17.2.2	hormone metabolism.auxin.signal transduction	4 (3.13%)	1	1	0	1	1	0	0	0
26.8	misc.nitrilases, *nitrile lyases, berberine bridge enzymes, reticuline oxidases, troponine reductases	4 (3.13%)	0	2	0	0	1	1	0	0
27.3.3	RNA.regulation of transcription.AP2/EREBP, APETALA2/Ethylene-responsive element binding protein family	4 (3.13%)	0	0	0	0	2	0	2	0
30.3	signalling.calcium	4 (3.13%)	0	1	1	1	0	0	0	1
34	transport	4 (3.13%)	2	0	0	1	0	0	0	1
27.3.20	RNA.regulation of transcription.G2-like transcription factor family, GARP	3 (2.34%)	0	0	0	2	1	0	0	0
27.3.25	RNA.regulation of transcription.MYB domain transcription factor family	3 (2.34%)	0	0	0	3	0	0	0	0
27.3.60	RNA.regulation of transcription.NIN-like bZIP-related family	3 (2.34%)	0	2	0	1	0	0	0	0
27.4	RNA.RNA binding	3 (2.34%)	2	0	0	0	0	0	0	1
28	DNA	3 (2.34%)	1	0	0	0	1	0	1	0
31	cell	3 (2.34%)	1	0	0	1	0	0	0	1
31.1	cell.organisation	3 (2.34%)	1	0	0	1	0	0	0	1
34.3	transport.amino acids	3 (2.34%)	2	0	0	1	0	0	0	0
10	cell wall	2 (1.56%)	0	1	0	0	0	0	0	1
10.6	cell wall.degradation	2 (1.56%)	0	1	0	0	0	0	0	1
16	secondary metabolism	2 (1.56%)	1	0	0	0	1	0	0	0
17.6	hormone metabolism.gibberelin	2 (1.56%)	0	0	0	2	0	0	0	0
17.6.2	hormone metabolism.gibberelin.signal transduction	2 (1.56%)	0	0	0	2	0	0	0	0
19	tetrapyrrole synthesis	2 (1.56%)	1	1	0	0	0	0	0	0
19.21	tetrapyrrole synthesis.heme oxygenase	2 (1.56%)	1	1	0	0	0	0	0	0
27.3.26	RNA.regulation of transcription.MYB-related transcription factor family	2 (1.56%)	0	0	0	0	2	0	0	0
27.3.35	RNA.regulation of transcription.bZIP transcription factor family	2 (1.56%)	0	0	1	1	0	0	0	0
28.1	DNA.synthesis/chromatin structure	2 (1.56%)	1	0	0	0	1	0	0	0
30.2	signalling.receptor kinases	2 (1.56%)	1	1	0	0	0	0	0	0
30.2.17	signalling.receptor kinases.DUF 26	2 (1.56%)	1	1	0	0	0	0	0	0
1	PS	1 (0.78%)	0	0	0	0	0	0	1	0
1.1	PS.lightreaction	1 (0.78%)	0	0	0	0	0	0	1	0
1.1.40	PS.lightreaction.cyclic electron flow-chlororespiration	1 (0.78%)	0	0	0	0	0	0	1	0
5	fermentation	1 (0.78%)	0	0	0	1	0	0	0	0
10.6.1	cell wall.degradation.cellulases and beta -1,4-glucanases	1 (0.78%)	0	0	0	0	0	0	0	1
10.6.3	cell wall.degradation.pectate lyases and polygalacturonases	1 (0.78%)	0	1	0	0	0	0	0	0
13	amino acid metabolism	1 (0.78%)	0	0	0	0	0	0	0	1
13.1	amino acid metabolism.synthesis	1 (0.78%)	0	0	0	0	0	0	0	1
13.1.6	amino acid metabolism.synthesis.aromatic aa	1 (0.78%)	0	0	0	0	0	0	0	1
13.1.6.5	amino acid metabolism.synthesis.aromatic aa.tryptophan	1 (0.78%)	0	0	0	0	0	0	0	1
13.1.6.5.5	amino acid metabolism.synthesis.aromatic aa.tryptophan.tryptophan synthase	1 (0.78%)	0	0	0	0	0	0	0	1
16.2	secondary metabolism.phenylpropanoids	1 (0.78%)	0	0	0	0	1	0	0	0
16.4	secondary metabolism.N misc	1 (0.78%)	1	0	0	0	0	0	0	0
16.4.1	secondary metabolism.N misc.alkaloid-like	1 (0.78%)	1	0	0	0	0	0	0	0
17.4	hormone metabolism.cytokinin	1 (0.78%)	0	0	0	0	0	1	0	0
17.4.2	hormone metabolism.cytokinin.signal transduction	1 (0.78%)	0	0	0	0	0	1	0	0
20	stress	1 (0.78%)	1	0	0	0	0	0	0	0
20.2	stress.abiotic	1 (0.78%)	1	0	0	0	0	0	0	0
20.2.99	stress.abiotic.unspecified	1 (0.78%)	1	0	0	0	0	0	0	0
26.16	misc.myrosinases-lectin-jacalin	1 (0.78%)	0	1	0	0	0	0	0	0
26.17	misc.dynamin	1 (0.78%)	0	0	0	0	0	1	0	0
26.3	misc.gluco-, galacto- and mannosidases	1 (0.78%)	0	0	0	0	0	0	0	1
26.3.4	misc.gluco-, galacto- and mannosidases.endoglucanase	1 (0.78%)	0	0	0	0	0	0	0	1
27.1	RNA.processing	1 (0.78%)	0	1	0	0	0	0	0	0
27.2	RNA.transcription	1 (0.78%)	0	0	0	0	0	0	0	1
27.3.1	RNA.regulation of transcription.ABI3/VP1-related B3-domain-containing transcription factor family	1 (0.78%)	1	0	0	0	0	0	0	0
27.3.11	RNA.regulation of transcription.C2H2 zinc finger family	1 (0.78%)	0	0	0	0	1	0	0	0
27.3.59	RNA.regulation of transcription.Methyl binding domain proteins	1 (0.78%)	0	0	0	0	0	1	0	0
28.99	DNA.unspecified	1 (0.78%)	0	0	0	0	0	0	1	0
29.2.1.1.1.1.2	protein.synthesis.ribosomal protein.prokaryotic.chloroplast.30S subunit.S2	1 (0.78%)	0	0	0	0	0	0	1	0
29.4.1	protein.postranslational modification.kinase	1 (0.78%)	0	0	0	1	0	0	0	0
29.4.1.57	protein.postranslational modification.kinase.receptor like cytoplasmatic kinase VII	1 (0.78%)	0	0	0	1	0	0	0	0
5.10	fermentation.aldehyde dehydrogenase	1 (0.78%)	0	0	0	1	0	0	0	0
29.5	protein.degradation	1 (0.78%)	0	0	0	0	0	1	0	0
29.5.11.4.2	protein.degradation.ubiquitin.E3.RING	1 (0.78%)	0	0	0	0	1	0	0	0
29.5.5	protein.degradation.serine protease	1 (0.78%)	0	0	0	0	0	1	0	0
30.11	signalling.light	1 (0.78%)	0	0	0	0	1	0	0	0
34.99	transport.misc	1 (0.78%)	0	0	0	0	0	0	0	1