PLAZA 3.0 Dicots : Binding Sites

MapMan terms associated with a binding site

Binding site: Motif_158
Name: ZDNAFORMINGATCAB1
Description: Z-DNA-forming sequence found in the Arabidopsis chlorophyll a/b binding protein gene (cab1) promoter; Involved in light-dependent developmental expression of the gene; Z-box; Activation of Z-box containing promoters is regulated by downstream regulatory components, COP1 and HY5; phyB and CRY1 photoreceptors act redundantly to induce Z-box containing promoters in white light; Identification of upstream regulatory elements involved in the developmental expression of the Arabidopsis thaliana cab1 gene

#Associated genes: 362
#Associated MapMan terms: 124

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MapMan	Description	#Associated genes	ath	bra	egr	gma	ptr	ppe	sly	vvi
27	RNA	50 (13.81%)	6	9	1	12	8	8	1	5
27.3	RNA.regulation of transcription	47 (12.98%)	5	9	1	10	8	8	1	5
29	protein	39 (10.77%)	2	2	3	8	8	8	3	5
29.4	protein.postranslational modification	27 (7.46%)	2	2	2	5	5	5	3	3
33	development	25 (6.91%)	3	4	1	6	3	4	2	2
34	transport	18 (4.97%)	1	0	3	4	4	2	3	1
20	stress	15 (4.14%)	0	0	1	4	2	5	1	2
20.1	stress.biotic	14 (3.87%)	0	0	1	4	2	5	0	2
33.99	development.unspecified	14 (3.87%)	0	1	1	4	2	3	2	1
30	signalling	13 (3.59%)	0	1	2	1	7	2	0	0
17	hormone metabolism	11 (3.04%)	1	1	0	4	3	0	0	2
27.3.25	RNA.regulation of transcription.MYB domain transcription factor family	10 (2.76%)	2	5	0	2	1	0	0	0
27.3.3	RNA.regulation of transcription.AP2/EREBP, APETALA2/Ethylene-responsive element binding protein family	10 (2.76%)	1	0	0	3	1	3	0	2
33.2	development.late embryogenesis abundant	10 (2.76%)	3	3	0	1	1	1	0	1
17.5	hormone metabolism.ethylene	9 (2.49%)	1	1	0	3	3	0	0	1
17.5.1	hormone metabolism.ethylene.synthesis-degradation	8 (2.21%)	1	1	0	3	2	0	0	1
26	misc	8 (2.21%)	2	0	1	1	1	1	0	2
17.5.1.1	hormone metabolism.ethylene.synthesis-degradation.1-aminocyclopropane-1-carboxylate synthase	7 (1.93%)	1	1	0	2	2	0	0	1
29.5.11.4.2	protein.degradation.ubiquitin.E3.RING	7 (1.93%)	0	0	2	2	2	1	0	0
34.99	transport.misc	7 (1.93%)	0	0	0	2	1	1	2	1
11	lipid metabolism	6 (1.66%)	0	1	0	0	2	1	1	1
29.5	protein.degradation	6 (1.66%)	0	0	1	1	1	2	0	1
16	secondary metabolism	5 (1.38%)	0	0	0	1	1	1	1	1
20.1.7	stress.biotic.PR-proteins	5 (1.38%)	0	0	1	1	0	3	0	0
27.3.22	RNA.regulation of transcription.HB,Homeobox transcription factor family	5 (1.38%)	1	2	0	0	1	1	0	0
27.3.32	RNA.regulation of transcription.WRKY domain transcription factor family	5 (1.38%)	1	0	1	1	0	1	1	0
1	PS	4 (1.10%)	1	0	0	2	1	0	0	0
10	cell wall	4 (1.10%)	0	0	0	0	1	1	0	2
16.7	secondary metabolism.wax	4 (1.10%)	0	0	0	1	0	1	1	1
29.3	protein.targeting	4 (1.10%)	0	0	0	2	0	1	0	1
29.3.4	protein.targeting.secretory pathway	4 (1.10%)	0	0	0	2	0	1	0	1
30.2	signalling.receptor kinases	4 (1.10%)	0	1	0	0	3	0	0	0
30.3	signalling.calcium	4 (1.10%)	0	0	1	1	0	2	0	0
1.1	PS.lightreaction	3 (0.83%)	0	0	0	2	1	0	0	0
1.1.40	PS.lightreaction.cyclic electron flow-chlororespiration	3 (0.83%)	0	0	0	2	1	0	0	0
11.5	lipid metabolism.glyceral metabolism	3 (0.83%)	0	0	0	0	1	0	1	1
11.5.2	lipid metabolism.glyceral metabolism.Glycerol-3-phosphate dehydrogenase (NAD+)	3 (0.83%)	0	0	0	0	1	0	1	1
26.22	misc.short chain dehydrogenase/reductase (SDR)	3 (0.83%)	2	0	0	1	0	0	0	0
27.1	RNA.processing	3 (0.83%)	1	0	0	2	0	0	0	0
27.3.8	RNA.regulation of transcription.C2C2(Zn) DOF zinc finger family	3 (0.83%)	0	1	0	0	1	0	0	1
29.3.4.3	protein.targeting.secretory pathway.vacuole	3 (0.83%)	0	0	0	2	0	1	0	0
30.11	signalling.light	3 (0.83%)	0	0	0	0	3	0	0	0
31	cell	3 (0.83%)	1	0	0	1	0	1	0	0
31.4	cell.vesicle transport	3 (0.83%)	1	0	0	1	0	1	0	0
34.19	transport.Major Intrinsic Proteins	3 (0.83%)	0	0	2	0	0	0	1	0
34.19.2	transport.Major Intrinsic Proteins.TIP	3 (0.83%)	0	0	2	0	0	0	1	0
10.2	cell wall.cellulose synthesis	2 (0.55%)	0	0	0	0	1	1	0	0
13	amino acid metabolism	2 (0.55%)	0	0	0	1	1	0	0	0
13.1	amino acid metabolism.synthesis	2 (0.55%)	0	0	0	1	1	0	0	0
13.1.3	amino acid metabolism.synthesis.aspartate family	2 (0.55%)	0	0	0	1	1	0	0	0
13.1.3.1	amino acid metabolism.synthesis.aspartate family.asparagine	2 (0.55%)	0	0	0	1	1	0	0	0
26.4	misc.beta 1,3 glucan hydrolases	2 (0.55%)	0	0	0	0	0	0	0	2
26.4.1	misc.beta 1,3 glucan hydrolases.glucan endo-1,3-beta-glucosidase	2 (0.55%)	0	0	0	0	0	0	0	2
27.1.19	RNA.processing.ribonucleases	2 (0.55%)	0	0	0	2	0	0	0	0
27.3.11	RNA.regulation of transcription.C2H2 zinc finger family	2 (0.55%)	0	0	0	1	0	1	0	0
27.3.35	RNA.regulation of transcription.bZIP transcription factor family	2 (0.55%)	0	0	0	0	2	0	0	0
27.3.59	RNA.regulation of transcription.Methyl binding domain proteins	2 (0.55%)	0	0	0	2	0	0	0	0
27.3.67	RNA.regulation of transcription.putative transcription regulator	2 (0.55%)	0	0	0	0	0	1	0	1
28	DNA	2 (0.55%)	0	0	0	0	1	0	1	0
28.1	DNA.synthesis/chromatin structure	2 (0.55%)	0	0	0	0	1	0	1	0
29.4.1	protein.postranslational modification.kinase	2 (0.55%)	0	0	0	1	0	1	0	0
29.4.1.57	protein.postranslational modification.kinase.receptor like cytoplasmatic kinase VII	2 (0.55%)	0	0	0	1	0	1	0	0
29.5.3	protein.degradation.cysteine protease	2 (0.55%)	0	0	1	0	0	1	0	0
29.7	protein.glycosylation	2 (0.55%)	0	0	0	0	2	0	0	0
30.2.17	signalling.receptor kinases.DUF 26	2 (0.55%)	0	0	0	0	2	0	0	0
34.15	transport.potassium	2 (0.55%)	0	0	1	0	1	0	0	0
34.16	transport.ABC transporters and multidrug resistance systems	2 (0.55%)	1	0	0	1	0	0	0	0
1.3	PS.calvin cycle	1 (0.28%)	1	0	0	0	0	0	0	0
1.3.6	PS.calvin cycle.aldolase	1 (0.28%)	1	0	0	0	0	0	0	0
4	glycolysis	1 (0.28%)	1	0	0	0	0	0	0	0
8	TCA / org transformation	1 (0.28%)	0	0	0	0	0	0	0	1
10.1	cell wall.precursor synthesis	1 (0.28%)	0	0	0	0	0	0	0	1
10.1.10	cell wall.precursor synthesis.UDP-glucose 4,6-dehydratase	1 (0.28%)	0	0	0	0	0	0	0	1
10.2.2	cell wall.cellulose synthesis.COBRA	1 (0.28%)	0	0	0	0	0	1	0	0
10.6	cell wall.degradation	1 (0.28%)	0	0	0	0	0	0	0	1
10.6.2	cell wall.degradation.mannan-xylose-arabinose-fucose	1 (0.28%)	0	0	0	0	0	0	0	1
11.3	lipid metabolism.Phospholipid synthesis	1 (0.28%)	0	0	0	0	1	0	0	0
11.4	lipid metabolism.TAG synthesis	1 (0.28%)	0	1	0	0	0	0	0	0
11.8	lipid metabolism.exotics(steroids, squalene etc)	1 (0.28%)	0	0	0	0	0	1	0	0
11.8.3	lipid metabolism.exotics (steroids, squalene etc).UDP-glucose:sterol glucosyltransferase	1 (0.28%)	0	0	0	0	0	1	0	0
13.1.3.1.1	amino acid metabolism.synthesis.aspartate family.asparagine.asparagine synthetase	1 (0.28%)	0	0	0	0	1	0	0	0
15	metal handling	1 (0.28%)	0	0	0	0	1	0	0	0
15.2	metal handling.binding, chelation and storage	1 (0.28%)	0	0	0	0	1	0	0	0
16.1	secondary metabolism.isoprenoids	1 (0.28%)	0	0	0	0	1	0	0	0
17.2	hormone metabolism.auxin	1 (0.28%)	0	0	0	0	0	0	0	1
17.2.3	hormone metabolism.auxin.induced-regulated-responsive-activated	1 (0.28%)	0	0	0	0	0	0	0	1
17.5.2	hormone metabolism.ethylene.signal transduction	1 (0.28%)	0	0	0	0	1	0	0	0
17.8	hormone metabolism.salicylic acid	1 (0.28%)	0	0	0	1	0	0	0	0
17.8.1	hormone metabolism.salicylic acid.synthesis-degradation	1 (0.28%)	0	0	0	1	0	0	0	0
19	tetrapyrrole synthesis	1 (0.28%)	0	0	0	0	0	1	0	0
19.3	tetrapyrrole synthesis.GSA	1 (0.28%)	0	0	0	0	0	1	0	0
20.2	stress.abiotic	1 (0.28%)	0	0	0	0	0	0	1	0
20.2.99	stress.abiotic.unspecified	1 (0.28%)	0	0	0	0	0	0	1	0
21	redox	1 (0.28%)	1	0	0	0	0	0	0	0
21.4	redox.glutaredoxins	1 (0.28%)	1	0	0	0	0	0	0	0
26.19	misc.plastocyanin-like	1 (0.28%)	0	0	0	0	0	1	0	0
26.2	misc.UDP glucosyl and glucoronyl transferases	1 (0.28%)	0	0	1	0	0	0	0	0
26.21	misc.protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	1 (0.28%)	0	0	0	0	1	0	0	0
27.3.13	RNA.regulation of transcription.CCAAT box binding factor family, DR1	1 (0.28%)	0	0	0	1	0	0	0	0
27.3.24	RNA.regulation of transcription.MADS box transcription factor family	1 (0.28%)	0	0	0	0	1	0	0	0
27.3.34	RNA.regulation of transcription.Orphan family	1 (0.28%)	0	1	0	0	0	0	0	0
27.3.44	RNA.regulation of transcription.Chromatin Remodeling Factors	1 (0.28%)	0	0	0	0	1	0	0	0
27.3.6	RNA.regulation of transcription.bHLH,Basic Helix-Loop-Helix family	1 (0.28%)	0	0	0	0	0	0	0	1
27.3.7	RNA.regulation of transcription.C2C2(Zn) CO-like, Constans-like zinc finger family	1 (0.28%)	0	1	0	0	0	0	0	0
27.3.80	RNA.regulation of transcription.zf-HD	1 (0.28%)	0	0	0	0	0	1	0	0
28.1.3	DNA.synthesis/chromatin structure.histone	1 (0.28%)	0	0	0	0	0	0	1	0
29.2.1.1.1.2.19	protein.synthesis.ribosomal protein.prokaryotic.chloroplast.50S subunit.L19	1 (0.28%)	1	0	0	0	0	0	0	0
29.2.1.2.2.34	protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L34	1 (0.28%)	0	0	0	0	0	0	1	0
29.3.4.99	protein.targeting.secretory pathway.unspecified	1 (0.28%)	0	0	0	0	0	0	0	1
29.5.11.4.3.2	protein.degradation.ubiquitin.E3.SCF.FBOX	1 (0.28%)	0	0	0	0	0	1	0	0
29.5.7	protein.degradation.metalloprotease	1 (0.28%)	0	0	0	1	0	0	0	0
29.5.9	protein.degradation.AAA type	1 (0.28%)	0	0	0	0	0	1	0	0
30.1	signalling.in sugar and nutrient physiology	1 (0.28%)	0	0	1	0	0	0	0	0
30.2.3	signalling.receptor kinases.leucine rich repeat III	1 (0.28%)	0	0	0	0	1	0	0	0
30.2.99	signalling.receptor kinases.misc	1 (0.28%)	0	1	0	0	0	0	0	0
4.3	glycolysis.unclear/dually targeted	1 (0.28%)	1	0	0	0	0	0	0	0
8.1	TCA / org transformation.TCA	1 (0.28%)	0	0	0	0	0	0	0	1
30.5	signalling.G-proteins	1 (0.28%)	0	0	0	0	1	0	0	0
33.1	development.storage proteins	1 (0.28%)	0	0	0	1	0	0	0	0
34.18	transport.unspecified anions	1 (0.28%)	0	0	0	0	1	0	0	0
34.2	transport.sugars	1 (0.28%)	0	0	0	0	1	0	0	0
34.7	transport.phosphate	1 (0.28%)	0	0	0	0	0	1	0	0
4.3.10	glycolysis.unclear/dually targeted.aldolase	1 (0.28%)	1	0	0	0	0	0	0	0
8.1.7	TCA / org transformation.TCA.succinate dehydrogenase	1 (0.28%)	0	0	0	0	0	0	0	1