PLAZA 3.0 Dicots : Binding Sites

Gene Ontology terms associated with a binding site

Binding site: Motif_135
Name: WRKY11
Description: Studies on DNA-binding selectivity of WRKY transcription factors lend structural clues into WRKY-domain function

#Associated genes: 12
#Associated GO terms: 220

Biological Process
Molecular Function
Cellular Component

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Biological Process (back to top)

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GO	Description	#Associated genes	bra	cme	ptr	ppe	sly	stu
GO:0065007	biological regulation	7 (58.33%)	1	1	0	3	1	1
GO:0050789	regulation of biological process	7 (58.33%)	1	1	0	3	1	1
GO:0044237	cellular metabolic process	6 (50.00%)	1	0	1	2	1	1
GO:0009987	cellular process	6 (50.00%)	1	0	1	2	1	1
GO:0008152	metabolic process	6 (50.00%)	1	0	1	2	1	1
GO:0071704	organic substance metabolic process	6 (50.00%)	1	0	1	2	1	1
GO:0044238	primary metabolic process	6 (50.00%)	1	0	1	2	1	1
GO:0016070	RNA metabolic process	5 (41.67%)	1	0	1	2	1	0
GO:0009058	biosynthetic process	5 (41.67%)	1	0	0	2	1	1
GO:0006725	cellular aromatic compound metabolic process	5 (41.67%)	1	0	1	2	1	0
GO:0044249	cellular biosynthetic process	5 (41.67%)	1	0	0	2	1	1
GO:0044260	cellular macromolecule metabolic process	5 (41.67%)	1	0	1	2	1	0
GO:0034641	cellular nitrogen compound metabolic process	5 (41.67%)	1	0	1	2	1	0
GO:0010467	gene expression	5 (41.67%)	1	0	1	2	1	0
GO:0046483	heterocycle metabolic process	5 (41.67%)	1	0	1	2	1	0
GO:0043170	macromolecule metabolic process	5 (41.67%)	1	0	1	2	1	0
GO:0006807	nitrogen compound metabolic process	5 (41.67%)	1	0	1	2	1	0
GO:0090304	nucleic acid metabolic process	5 (41.67%)	1	0	1	2	1	0
GO:0006139	nucleobase-containing compound metabolic process	5 (41.67%)	1	0	1	2	1	0
GO:1901360	organic cyclic compound metabolic process	5 (41.67%)	1	0	1	2	1	0
GO:1901576	organic substance biosynthetic process	5 (41.67%)	1	0	0	2	1	1
GO:0009889	regulation of biosynthetic process	5 (41.67%)	1	0	0	2	1	1
GO:0019222	regulation of metabolic process	5 (41.67%)	1	0	0	2	1	1
GO:0080090	regulation of primary metabolic process	5 (41.67%)	1	0	0	2	1	1
GO:0032774	RNA biosynthetic process	4 (33.33%)	1	0	0	2	1	0
GO:0019438	aromatic compound biosynthetic process	4 (33.33%)	1	0	0	2	1	0
GO:0034645	cellular macromolecule biosynthetic process	4 (33.33%)	1	0	0	2	1	0
GO:0044271	cellular nitrogen compound biosynthetic process	4 (33.33%)	1	0	0	2	1	0
GO:0018130	heterocycle biosynthetic process	4 (33.33%)	1	0	0	2	1	0
GO:0009059	macromolecule biosynthetic process	4 (33.33%)	1	0	0	2	1	0
GO:0034654	nucleobase-containing compound biosynthetic process	4 (33.33%)	1	0	0	2	1	0
GO:1901362	organic cyclic compound biosynthetic process	4 (33.33%)	1	0	0	2	1	0
GO:2001141	regulation of RNA biosynthetic process	4 (33.33%)	1	0	0	2	1	0
GO:0051252	regulation of RNA metabolic process	4 (33.33%)	1	0	0	2	1	0
GO:0031326	regulation of cellular biosynthetic process	4 (33.33%)	1	0	0	2	1	0
GO:2000112	regulation of cellular macromolecule biosynthetic process	4 (33.33%)	1	0	0	2	1	0
GO:0031323	regulation of cellular metabolic process	4 (33.33%)	1	0	0	2	1	0
GO:0050794	regulation of cellular process	4 (33.33%)	1	0	0	2	1	0
GO:0010468	regulation of gene expression	4 (33.33%)	1	0	0	2	1	0
GO:0010556	regulation of macromolecule biosynthetic process	4 (33.33%)	1	0	0	2	1	0
GO:0060255	regulation of macromolecule metabolic process	4 (33.33%)	1	0	0	2	1	0
GO:0051171	regulation of nitrogen compound metabolic process	4 (33.33%)	1	0	0	2	1	0
GO:0019219	regulation of nucleobase-containing compound metabolic process	4 (33.33%)	1	0	0	2	1	0
GO:0006355	regulation of transcription, DNA-dependent	4 (33.33%)	1	0	0	2	1	0
GO:0006351	transcription, DNA-templated	4 (33.33%)	1	0	0	2	1	0
GO:0032502	developmental process	3 (25.00%)	0	0	0	2	0	1
GO:0050793	regulation of developmental process	3 (25.00%)	0	0	0	2	0	1
GO:0009628	response to abiotic stimulus	3 (25.00%)	1	0	0	2	0	0
GO:0050896	response to stimulus	3 (25.00%)	1	0	0	2	0	0
GO:0044767	single-organism developmental process	3 (25.00%)	0	0	0	2	0	1
GO:0044699	single-organism process	3 (25.00%)	0	0	0	2	0	1
GO:0048856	anatomical structure development	2 (16.67%)	0	0	0	1	0	1
GO:0007275	multicellular organismal development	2 (16.67%)	0	0	0	1	0	1
GO:0032501	multicellular organismal process	2 (16.67%)	0	0	0	1	0	1
GO:2000026	regulation of multicellular organismal development	2 (16.67%)	0	0	0	1	0	1
GO:0051239	regulation of multicellular organismal process	2 (16.67%)	0	0	0	1	0	1
GO:0042221	response to chemical	2 (16.67%)	1	0	0	1	0	0
GO:0009409	response to cold	2 (16.67%)	1	0	0	1	0	0
GO:0010035	response to inorganic substance	2 (16.67%)	1	0	0	1	0	0
GO:0009416	response to light stimulus	2 (16.67%)	0	0	0	2	0	0
GO:0006970	response to osmotic stress	2 (16.67%)	1	0	0	1	0	0
GO:1901700	response to oxygen-containing compound	2 (16.67%)	1	0	0	1	0	0
GO:0009314	response to radiation	2 (16.67%)	0	0	0	2	0	0
GO:0006950	response to stress	2 (16.67%)	1	0	0	1	0	0
GO:0009266	response to temperature stimulus	2 (16.67%)	1	0	0	1	0	0
GO:0009415	response to water	2 (16.67%)	1	0	0	1	0	0
GO:0009414	response to water deprivation	2 (16.67%)	1	0	0	1	0	0
GO:0044707	single-multicellular organism process	2 (16.67%)	0	0	0	1	0	1
GO:0044763	single-organism cellular process	2 (16.67%)	0	0	0	1	0	1
GO:0048731	system development	2 (16.67%)	0	0	0	1	0	1
GO:0006396	RNA processing	1 (8.33%)	0	0	1	0	0	0
GO:0048532	anatomical structure arrangement	1 (8.33%)	0	0	0	0	0	1
GO:0048646	anatomical structure formation involved in morphogenesis	1 (8.33%)	0	0	0	0	0	1
GO:0009653	anatomical structure morphogenesis	1 (8.33%)	0	0	0	0	0	1
GO:0009926	auxin polar transport	1 (8.33%)	0	0	0	0	0	1
GO:0060918	auxin transport	1 (8.33%)	0	0	0	0	0	1
GO:0016117	carotenoid biosynthetic process	1 (8.33%)	0	0	0	0	0	1
GO:0016116	carotenoid metabolic process	1 (8.33%)	0	0	0	0	0	1
GO:0007154	cell communication	1 (8.33%)	0	0	0	1	0	0
GO:0030154	cell differentiation	1 (8.33%)	0	0	0	1	0	0
GO:0048869	cellular developmental process	1 (8.33%)	0	0	0	1	0	0
GO:0044255	cellular lipid metabolic process	1 (8.33%)	0	0	0	0	0	1
GO:0071214	cellular response to abiotic stimulus	1 (8.33%)	0	0	0	1	0	0
GO:0070887	cellular response to chemical stimulus	1 (8.33%)	0	0	0	1	0	0
GO:0071368	cellular response to cytokinin stimulus	1 (8.33%)	0	0	0	1	0	0
GO:0071495	cellular response to endogenous stimulus	1 (8.33%)	0	0	0	1	0	0
GO:0071369	cellular response to ethylene stimulus	1 (8.33%)	0	0	0	1	0	0
GO:0032870	cellular response to hormone stimulus	1 (8.33%)	0	0	0	1	0	0
GO:0071482	cellular response to light stimulus	1 (8.33%)	0	0	0	1	0	0
GO:0071310	cellular response to organic substance	1 (8.33%)	0	0	0	1	0	0
GO:0071470	cellular response to osmotic stress	1 (8.33%)	0	0	0	1	0	0
GO:0071478	cellular response to radiation	1 (8.33%)	0	0	0	1	0	0
GO:0071489	cellular response to red or far red light	1 (8.33%)	0	0	0	1	0	0
GO:0071472	cellular response to salt stress	1 (8.33%)	0	0	0	1	0	0
GO:0051716	cellular response to stimulus	1 (8.33%)	0	0	0	1	0	0
GO:0033554	cellular response to stress	1 (8.33%)	0	0	0	1	0	0
GO:0007623	circadian rhythm	1 (8.33%)	0	1	0	0	0	0
GO:0009736	cytokinin-activated signaling pathway	1 (8.33%)	0	0	0	1	0	0
GO:0003006	developmental process involved in reproduction	1 (8.33%)	0	0	0	1	0	0
GO:0051234	establishment of localization	1 (8.33%)	0	0	0	0	0	1
GO:0009873	ethylene mediated signaling pathway	1 (8.33%)	0	0	0	1	0	0
GO:0009813	flavonoid biosynthetic process	1 (8.33%)	0	0	0	0	0	1
GO:0009812	flavonoid metabolic process	1 (8.33%)	0	0	0	0	0	1
GO:0009914	hormone transport	1 (8.33%)	0	0	0	0	0	1
GO:0009755	hormone-mediated signaling pathway	1 (8.33%)	0	0	0	1	0	0
GO:0008299	isoprenoid biosynthetic process	1 (8.33%)	0	0	0	0	0	1
GO:0006720	isoprenoid metabolic process	1 (8.33%)	0	0	0	0	0	1
GO:0008610	lipid biosynthetic process	1 (8.33%)	0	0	0	0	0	1
GO:0006629	lipid metabolic process	1 (8.33%)	0	0	0	0	0	1
GO:0051179	localization	1 (8.33%)	0	0	0	0	0	1
GO:0048571	long-day photoperiodism	1 (8.33%)	0	0	0	1	0	0
GO:0048574	long-day photoperiodism, flowering	1 (8.33%)	0	0	0	1	0	0
GO:0016071	mRNA metabolic process	1 (8.33%)	0	0	1	0	0	0
GO:0006397	mRNA processing	1 (8.33%)	0	0	1	0	0	0
GO:0048507	meristem development	1 (8.33%)	0	0	0	0	0	1
GO:0009933	meristem structural organization	1 (8.33%)	0	0	0	0	0	1
GO:0001763	morphogenesis of a branching structure	1 (8.33%)	0	0	0	0	0	1
GO:0048519	negative regulation of biological process	1 (8.33%)	0	0	0	1	0	0
GO:0051093	negative regulation of developmental process	1 (8.33%)	0	0	0	1	0	0
GO:0048579	negative regulation of long-day photoperiodism, flowering	1 (8.33%)	0	0	0	1	0	0
GO:0051241	negative regulation of multicellular organismal process	1 (8.33%)	0	0	0	1	0	0
GO:0048581	negative regulation of post-embryonic development	1 (8.33%)	0	0	0	1	0	0
GO:0048585	negative regulation of response to stimulus	1 (8.33%)	0	0	0	1	0	0
GO:0048577	negative regulation of short-day photoperiodism, flowering	1 (8.33%)	0	0	0	1	0	0
GO:0048513	organ development	1 (8.33%)	0	0	0	0	0	1
GO:0055114	oxidation-reduction process	1 (8.33%)	0	0	0	0	0	1
GO:0000160	phosphorelay signal transduction system	1 (8.33%)	0	0	0	1	0	0
GO:0009648	photoperiodism	1 (8.33%)	0	0	0	1	0	0
GO:0048573	photoperiodism, flowering	1 (8.33%)	0	0	0	1	0	0
GO:0046148	pigment biosynthetic process	1 (8.33%)	0	0	0	0	0	1
GO:0042440	pigment metabolic process	1 (8.33%)	0	0	0	0	0	1
GO:0048518	positive regulation of biological process	1 (8.33%)	0	0	0	0	0	1
GO:0009891	positive regulation of biosynthetic process	1 (8.33%)	0	0	0	0	0	1
GO:0009963	positive regulation of flavonoid biosynthetic process	1 (8.33%)	0	0	0	0	0	1
GO:0009893	positive regulation of metabolic process	1 (8.33%)	0	0	0	0	0	1
GO:0009791	post-embryonic development	1 (8.33%)	0	0	0	1	0	0
GO:0010017	red or far-red light signaling pathway	1 (8.33%)	0	0	0	1	0	0
GO:0022603	regulation of anatomical structure morphogenesis	1 (8.33%)	0	0	0	0	0	1
GO:0065008	regulation of biological quality	1 (8.33%)	0	0	0	0	0	1
GO:0045595	regulation of cell differentiation	1 (8.33%)	0	0	0	1	0	0
GO:0042752	regulation of circadian rhythm	1 (8.33%)	0	1	0	0	0	0
GO:0009962	regulation of flavonoid biosynthetic process	1 (8.33%)	0	0	0	0	0	1
GO:0010817	regulation of hormone levels	1 (8.33%)	0	0	0	0	0	1
GO:0048586	regulation of long-day photoperiodism, flowering	1 (8.33%)	0	0	0	1	0	0
GO:0048509	regulation of meristem development	1 (8.33%)	0	0	0	0	0	1
GO:0009934	regulation of meristem structural organization	1 (8.33%)	0	0	0	0	0	1
GO:2000028	regulation of photoperiodism, flowering	1 (8.33%)	0	0	0	1	0	0
GO:0048580	regulation of post-embryonic development	1 (8.33%)	0	0	0	1	0	0
GO:2000241	regulation of reproductive process	1 (8.33%)	0	0	0	1	0	0
GO:0048583	regulation of response to stimulus	1 (8.33%)	0	0	0	1	0	0
GO:0048587	regulation of short-day photoperiodism, flowering	1 (8.33%)	0	0	0	1	0	0
GO:0000003	reproduction	1 (8.33%)	0	0	0	1	0	0
GO:0022414	reproductive process	1 (8.33%)	0	0	0	1	0	0
GO:0048608	reproductive structure development	1 (8.33%)	0	0	0	1	0	0
GO:0061458	reproductive system development	1 (8.33%)	0	0	0	1	0	0
GO:0009735	response to cytokinin	1 (8.33%)	0	0	0	1	0	0
GO:0009719	response to endogenous stimulus	1 (8.33%)	0	0	0	1	0	0
GO:0009723	response to ethylene	1 (8.33%)	0	0	0	1	0	0
GO:0009725	response to hormone	1 (8.33%)	0	0	0	1	0	0
GO:0010033	response to organic substance	1 (8.33%)	0	0	0	1	0	0
GO:0009639	response to red or far red light	1 (8.33%)	0	0	0	1	0	0
GO:0009651	response to salt stress	1 (8.33%)	0	0	0	1	0	0
GO:0009611	response to wounding	1 (8.33%)	0	0	0	1	0	0
GO:0048511	rhythmic process	1 (8.33%)	0	1	0	0	0	0
GO:0010223	secondary shoot formation	1 (8.33%)	0	0	0	0	0	1
GO:0010346	shoot axis formation	1 (8.33%)	0	0	0	0	0	1
GO:0048367	shoot system development	1 (8.33%)	0	0	0	0	0	1
GO:0010016	shoot system morphogenesis	1 (8.33%)	0	0	0	0	0	1
GO:0048572	short-day photoperiodism	1 (8.33%)	0	0	0	1	0	0
GO:0048575	short-day photoperiodism, flowering	1 (8.33%)	0	0	0	1	0	0
GO:0007165	signal transduction	1 (8.33%)	0	0	0	1	0	0
GO:0023052	signaling	1 (8.33%)	0	0	0	1	0	0
GO:0044700	single organism signaling	1 (8.33%)	0	0	0	1	0	0
GO:0044711	single-organism biosynthetic process	1 (8.33%)	0	0	0	0	0	1
GO:0044710	single-organism metabolic process	1 (8.33%)	0	0	0	0	0	1
GO:0044765	single-organism transport	1 (8.33%)	0	0	0	0	0	1
GO:0016114	terpenoid biosynthetic process	1 (8.33%)	0	0	0	0	0	1
GO:0006721	terpenoid metabolic process	1 (8.33%)	0	0	0	0	0	1
GO:0016109	tetraterpenoid biosynthetic process	1 (8.33%)	0	0	0	0	0	1
GO:0016108	tetraterpenoid metabolic process	1 (8.33%)	0	0	0	0	0	1
GO:0009888	tissue development	1 (8.33%)	0	0	0	0	0	1
GO:0006810	transport	1 (8.33%)	0	0	0	0	0	1
GO:0010228	vegetative to reproductive phase transition of meristem	1 (8.33%)	0	0	0	1	0	0

Molecular Function (back to top)

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GO	Description	#Associated genes	bra	gma	ptr	ppe	sly	stu	vvi
GO:0005488	binding	9 (75.00%)	1	1	1	3	1	1	1
GO:1901363	heterocyclic compound binding	7 (58.33%)	1	0	1	2	1	1	1
GO:0097159	organic cyclic compound binding	7 (58.33%)	1	0	1	2	1	1	1
GO:0003676	nucleic acid binding	6 (50.00%)	1	0	1	2	1	0	1
GO:0003677	DNA binding	5 (41.67%)	1	0	0	2	1	0	1
GO:0005515	protein binding	4 (33.33%)	1	1	0	2	0	0	0
GO:0003723	RNA binding	2 (16.67%)	0	0	1	1	0	0	0
GO:0003682	chromatin binding	2 (16.67%)	0	0	0	0	1	0	1
GO:0001071	nucleic acid binding transcription factor activity	2 (16.67%)	1	0	0	1	0	0	0
GO:0043565	sequence-specific DNA binding	2 (16.67%)	1	0	0	1	0	0	0
GO:0003700	sequence-specific DNA binding transcription factor activity	2 (16.67%)	1	0	0	1	0	0	0
GO:0003824	catalytic activity	1 (8.33%)	0	0	0	0	0	1	0
GO:0043169	cation binding	1 (8.33%)	0	0	0	0	0	1	0
GO:0020037	heme binding	1 (8.33%)	0	0	0	0	0	1	0
GO:0043167	ion binding	1 (8.33%)	0	0	0	0	0	1	0
GO:0005506	iron ion binding	1 (8.33%)	0	0	0	0	0	1	0
GO:0046872	metal ion binding	1 (8.33%)	0	0	0	0	0	1	0
GO:1901265	nucleoside phosphate binding	1 (8.33%)	0	0	1	0	0	0	0
GO:0000166	nucleotide binding	1 (8.33%)	0	0	1	0	0	0	0
GO:0016491	oxidoreductase activity	1 (8.33%)	0	0	0	0	0	1	0
GO:0016705	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	1 (8.33%)	0	0	0	0	0	1	0
GO:0046983	protein dimerization activity	1 (8.33%)	0	0	0	1	0	0	0
GO:0036094	small molecule binding	1 (8.33%)	0	0	1	0	0	0	0
GO:0046906	tetrapyrrole binding	1 (8.33%)	0	0	0	0	0	1	0
GO:0046914	transition metal ion binding	1 (8.33%)	0	0	0	0	0	1	0

Cellular Component (back to top)

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GO	Description	#Associated genes	bra	cme	ptr	ppe
GO:0005623	cell	5 (41.67%)	1	1	1	2
GO:0044464	cell part	5 (41.67%)	1	1	1	2
GO:0005622	intracellular	5 (41.67%)	1	1	1	2
GO:0043231	intracellular membrane-bounded organelle	5 (41.67%)	1	1	1	2
GO:0043229	intracellular organelle	5 (41.67%)	1	1	1	2
GO:0044424	intracellular part	5 (41.67%)	1	1	1	2
GO:0043227	membrane-bounded organelle	5 (41.67%)	1	1	1	2
GO:0005634	nucleus	5 (41.67%)	1	1	1	2
GO:0043226	organelle	5 (41.67%)	1	1	1	2
GO:0005737	cytoplasm	1 (8.33%)	0	0	0	1
GO:0044444	cytoplasmic part	1 (8.33%)	0	0	0	1
GO:0005829	cytosol	1 (8.33%)	0	0	0	1