PLAZA 3.0 Dicots : Binding Sites

MapMan terms associated with a binding site

Binding site: Motif_13
Name: E2F-varient binding site motif
Description: A genome-wide identification of E2F-regulated genes in Arabidopsis

#Associated genes: 203
#Associated MapMan terms: 84

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MapMan	Description	#Associated genes	ath	bra	egr	gma	ptr	ppe	sly	vvi
27	RNA	37 (18.23%)	2	3	5	10	7	3	1	6
27.3	RNA.regulation of transcription	34 (16.75%)	2	3	4	10	6	3	1	5
28	DNA	28 (13.79%)	0	0	5	1	7	5	4	6
28.1	DNA.synthesis/chromatin structure	26 (12.81%)	0	0	4	1	6	5	4	6
29	protein	12 (5.91%)	0	1	3	2	2	1	1	2
26	misc	11 (5.42%)	0	0	8	0	2	0	0	1
29.5.11.4.3.2	protein.degradation.ubiquitin.E3.SCF.FBOX	10 (4.93%)	1	2	1	2	2	1	0	1
27.3.6	RNA.regulation of transcription.bHLH,Basic Helix-Loop-Helix family	8 (3.94%)	0	0	0	2	2	1	1	2
31	cell	8 (3.94%)	3	0	1	2	0	1	0	1
34	transport	8 (3.94%)	1	0	0	2	5	0	0	0
26.3	misc.gluco-, galacto- and mannosidases	7 (3.45%)	0	0	7	0	0	0	0	0
26.3.1	misc.gluco-, galacto- and mannosidases.alpha-galactosidase	7 (3.45%)	0	0	7	0	0	0	0	0
27.3.17	RNA.regulation of transcription.CPP(Zn),CPP1-related transcription factor family	7 (3.45%)	0	0	2	4	0	1	0	0
27.3.70	RNA.regulation of transcription.Silencing Group	7 (3.45%)	1	0	1	2	2	0	0	1
10	cell wall	6 (2.96%)	0	0	1	2	1	1	0	1
29.4	protein.postranslational modification	6 (2.96%)	0	0	1	1	2	1	0	1
31.2	cell.division	6 (2.96%)	3	0	0	2	0	1	0	0
10.2	cell wall.cellulose synthesis	5 (2.46%)	0	0	1	2	0	1	0	1
27.3.25	RNA.regulation of transcription.MYB domain transcription factor family	5 (2.46%)	0	0	1	2	1	0	0	1
27.3.99	RNA.regulation of transcription.unclassified	4 (1.97%)	1	1	0	0	0	1	0	1
10.2.2	cell wall.cellulose synthesis.COBRA	3 (1.48%)	0	0	1	2	0	0	0	0
26.1	misc.misc2	3 (1.48%)	0	0	1	0	2	0	0	0
34.9	transport.metabolite transporters at the mitochondrial membrane	3 (1.48%)	1	0	0	2	0	0	0	0
1	PS	2 (0.99%)	0	0	0	0	2	0	0	0
1.2	PS.photorespiration	2 (0.99%)	0	0	0	0	2	0	0	0
1.2.3	PS.photorespiration.aminotransferases peroxisomal	2 (0.99%)	0	0	0	0	2	0	0	0
3	minor CHO metabolism	2 (0.99%)	1	0	0	0	0	0	1	0
13.1.1.3.11	amino acid metabolism.synthesis.central amino acid metabolism.alanine.alanine-glyoxylate aminotransferase	2 (0.99%)	0	0	0	0	2	0	0	0
28.1.3	DNA.synthesis/chromatin structure.histone	2 (0.99%)	0	0	2	0	0	0	0	0
29.2.1.1.1.2.19	protein.synthesis.ribosomal protein.prokaryotic.chloroplast.50S subunit.L19	2 (0.99%)	1	0	0	0	1	0	0	0
29.4.1	protein.postranslational modification.kinase	2 (0.99%)	0	0	0	0	2	0	0	0
29.5.11.4.4	protein.degradation.ubiquitin.E3.APC	2 (0.99%)	0	0	0	0	0	1	0	1
3.5	minor CHO metabolism.others	2 (0.99%)	1	0	0	0	0	0	1	0
27.1	RNA.processing	2 (0.99%)	0	0	1	0	0	0	0	1
28.2	DNA.repair	2 (0.99%)	0	0	1	0	1	0	0	0
29.5	protein.degradation	2 (0.99%)	0	0	0	1	0	0	1	0
31.1	cell.organisation	2 (0.99%)	0	0	1	0	0	0	0	1
33	development	2 (0.99%)	0	1	0	0	1	0	0	0
33.99	development.unspecified	2 (0.99%)	0	1	0	0	1	0	0	0
34.16	transport.ABC transporters and multidrug resistance systems	2 (0.99%)	0	0	0	0	2	0	0	0
34.98	transport.membrane system unknown	2 (0.99%)	0	0	0	0	2	0	0	0
2	major CHO metabolism	1 (0.49%)	0	0	0	0	0	1	0	0
10.2.1	cell wall.cellulose synthesis.cellulose synthase	1 (0.49%)	0	0	0	0	0	1	0	0
10.6	cell wall.degradation	1 (0.49%)	0	0	0	0	1	0	0	0
10.6.3	cell wall.degradation.pectate lyases and polygalacturonases	1 (0.49%)	0	0	0	0	1	0	0	0
17.5.1	hormone metabolism.ethylene.synthesis-degradation	1 (0.49%)	0	0	0	0	1	0	0	0
2.2	major CHO metabolism.degradation	1 (0.49%)	0	0	0	0	0	1	0	0
17.5	hormone metabolism.ethylene	1 (0.49%)	0	0	0	0	1	0	0	0
17.7	hormone metabolism.jasmonate	1 (0.49%)	0	0	0	0	1	0	0	0
17.7.1	hormone metabolism.jasmonate.synthesis-degradation	1 (0.49%)	0	0	0	0	1	0	0	0
2.2.2	major CHO metabolism.degradation.starch	1 (0.49%)	0	0	0	0	0	1	0	0
2.2.2.1	major CHO metabolism.degradation.starch.starch cleavage	1 (0.49%)	0	0	0	0	0	1	0	0
2.2.2.1.2	major CHO metabolism.degradation.starch.starch cleavage.beta amylase	1 (0.49%)	0	0	0	0	0	1	0	0
17	hormone metabolism	1 (0.49%)	0	0	0	0	1	0	0	0
20	stress	1 (0.49%)	0	0	1	0	0	0	0	0
20.2	stress.abiotic	1 (0.49%)	0	0	1	0	0	0	0	0
20.2.1	stress.abiotic.heat	1 (0.49%)	0	0	1	0	0	0	0	0
23	nucleotide metabolism	1 (0.49%)	0	1	0	0	0	0	0	0
23.5	nucleotide metabolism.deoxynucleotide metabolism	1 (0.49%)	0	1	0	0	0	0	0	0
23.5.3	nucleotide metabolism.deoxynucleotide metabolism.cytosine deaminase	1 (0.49%)	0	1	0	0	0	0	0	0
26.12	misc.peroxidases	1 (0.49%)	0	0	0	0	0	0	0	1
27.3.15	RNA.regulation of transcription.CCAAT box binding factor family, HAP3	1 (0.49%)	0	1	0	0	0	0	0	0
27.3.44	RNA.regulation of transcription.Chromatin Remodeling Factors	1 (0.49%)	0	1	0	0	0	0	0	0
27.3.7	RNA.regulation of transcription.C2C2(Zn) CO-like, Constans-like zinc finger family	1 (0.49%)	0	0	0	0	1	0	0	0
27.4	RNA.RNA binding	1 (0.49%)	0	0	0	0	1	0	0	0
28.1.3.2	DNA.synthesis/chromatin structure.histone.core	1 (0.49%)	0	0	1	0	0	0	0	0
28.1.3.2.3	DNA.synthesis/chromatin structure.histone.core.H3	1 (0.49%)	0	0	1	0	0	0	0	0
29.1	protein.aa activation	1 (0.49%)	0	1	0	0	0	0	0	0
29.2	protein.synthesis	1 (0.49%)	0	0	0	0	0	0	0	1
29.2.1.2.1.27	protein.synthesis.ribosomal protein.eukaryotic.40S subunit.S27	1 (0.49%)	0	0	0	1	0	0	0	0
29.2.2	protein.synthesis.ribosome biogenesis	1 (0.49%)	0	0	0	0	0	0	0	1
29.2.2.3	protein.synthesis.ribosome biogenesis.Pre-rRNA processing and modifications	1 (0.49%)	0	0	0	0	0	0	0	1
29.2.2.3.3	protein.synthesis.ribosome biogenesis.Pre-rRNA processing and modifications.methylotransferases	1 (0.49%)	0	0	0	0	0	0	0	1
29.3	protein.targeting	1 (0.49%)	0	0	1	0	0	0	0	0
29.3.1	protein.targeting.nucleus	1 (0.49%)	0	0	1	0	0	0	0	0
29.4.1.57	protein.postranslational modification.kinase.receptor like cytoplasmatic kinase VII	1 (0.49%)	0	0	0	0	1	0	0	0
29.5.11	protein.degradation.ubiquitin	1 (0.49%)	0	0	0	0	0	0	1	0
29.5.11.1	protein.degradation.ubiquitin.ubiquitin	1 (0.49%)	0	0	0	0	0	0	1	0
29.5.11.4.2	protein.degradation.ubiquitin.E3.RING	1 (0.49%)	0	0	0	0	0	0	0	1
29.5.9	protein.degradation.AAA type	1 (0.49%)	0	0	0	1	0	0	0	0
29.7	protein.glycosylation	1 (0.49%)	0	0	1	0	0	0	0	0
30	signalling	1 (0.49%)	0	0	0	0	0	1	0	0
30.5	signalling.G-proteins	1 (0.49%)	0	0	0	0	0	1	0	0
34.12	transport.metal	1 (0.49%)	0	0	0	0	1	0	0	0