PLAZA 3.0 Dicots : Binding Sites

MapMan terms associated with a binding site

Binding site: Matrix_98
Name: AG
Description: Isolation and characterization of the binding sequences for the product of the Arabidopsis floral homeotic gene AGAMOUS

#Associated genes: 476
#Associated MapMan terms: 157

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MapMan	Description	#Associated genes	ath	bra	egr	gma	ptr	ppe	sly	vvi
27	RNA	97 (20.38%)	5	10	3	21	29	12	5	12
27.3	RNA.regulation of transcription	85 (17.86%)	4	8	2	19	25	11	5	11
29	protein	52 (10.92%)	6	4	1	14	10	6	3	8
29.4	protein.postranslational modification	31 (6.51%)	3	2	1	9	6	2	2	6
31	cell	23 (4.83%)	2	2	0	7	3	3	3	3
29.5	protein.degradation	19 (3.99%)	2	2	0	5	4	4	1	1
30	signalling	19 (3.99%)	2	0	2	6	2	2	1	4
34	transport	19 (3.99%)	1	3	1	3	2	3	3	3
27.3.24	RNA.regulation of transcription.MADS box transcription factor family	18 (3.78%)	0	3	1	4	5	3	0	2
31.1	cell.organisation	18 (3.78%)	2	2	0	5	3	2	2	2
29.5.11.4.2	protein.degradation.ubiquitin.E3.RING	15 (3.15%)	1	0	1	6	1	2	2	2
26	misc	14 (2.94%)	2	1	1	2	3	0	1	4
33	development	12 (2.52%)	2	1	0	3	0	1	3	2
33.99	development.unspecified	12 (2.52%)	2	1	0	3	0	1	3	2
29.4.1	protein.postranslational modification.kinase	11 (2.31%)	1	1	1	3	1	1	1	2
29.5.11	protein.degradation.ubiquitin	10 (2.10%)	1	1	0	2	1	3	1	1
27.3.26	RNA.regulation of transcription.MYB-related transcription factor family	9 (1.89%)	1	1	0	4	2	0	0	1
17	hormone metabolism	8 (1.68%)	0	0	0	3	0	3	1	1
27.3.22	RNA.regulation of transcription.HB,Homeobox transcription factor family	8 (1.68%)	0	1	0	0	3	1	1	2
16	secondary metabolism	6 (1.26%)	1	1	0	2	0	0	1	1
27.3.37	RNA.regulation of transcription.AS2,Lateral Organ Boundaries Gene Family	6 (1.26%)	1	0	1	1	1	1	1	0
27.4	RNA.RNA binding	6 (1.26%)	0	1	0	2	2	1	0	0
30.11	signalling.light	6 (1.26%)	1	0	0	2	1	0	0	2
11	lipid metabolism	5 (1.05%)	0	0	1	0	0	2	0	2
16.1	secondary metabolism.isoprenoids	5 (1.05%)	1	1	0	2	0	0	1	0
17.2	hormone metabolism.auxin	5 (1.05%)	0	0	0	3	0	2	0	0
17.2.3	hormone metabolism.auxin.induced-regulated-responsive-activated	5 (1.05%)	0	0	0	3	0	2	0	0
26.28	misc.GDSL-motif lipase	5 (1.05%)	1	0	0	1	0	0	1	2
27.3.25	RNA.regulation of transcription.MYB domain transcription factor family	5 (1.05%)	0	0	0	0	4	1	0	0
27.3.99	RNA.regulation of transcription.unclassified	5 (1.05%)	1	0	0	1	0	1	1	1
29.4.1.57	protein.postranslational modification.kinase.receptor like cytoplasmatic kinase VII	5 (1.05%)	0	0	0	2	1	1	0	1
30.2	signalling.receptor kinases	5 (1.05%)	0	0	1	2	0	1	0	1
30.5	signalling.G-proteins	5 (1.05%)	0	0	1	2	0	0	1	1
31.3	cell.cycle	5 (1.05%)	0	0	0	2	0	1	1	1
20	stress	4 (0.84%)	1	0	0	0	1	1	1	0
27.1	RNA.processing	4 (0.84%)	1	0	1	0	2	0	0	0
27.3.11	RNA.regulation of transcription.C2H2 zinc finger family	4 (0.84%)	0	0	0	2	0	0	0	2
27.3.44	RNA.regulation of transcription.Chromatin Remodeling Factors	4 (0.84%)	0	1	0	2	1	0	0	0
28	DNA	4 (0.84%)	1	0	0	0	0	0	1	2
28.1	DNA.synthesis/chromatin structure	4 (0.84%)	1	0	0	0	0	0	1	2
29.5.11.20	protein.degradation.ubiquitin.proteasom	4 (0.84%)	0	0	0	2	0	1	1	0
30.2.11	signalling.receptor kinases.leucine rich repeat XI	4 (0.84%)	0	0	1	2	0	0	0	1
34.16	transport.ABC transporters and multidrug resistance systems	4 (0.84%)	0	1	0	1	1	0	0	1
34.99	transport.misc	4 (0.84%)	1	0	0	1	1	0	0	1
9	mitochondrial electron transport / ATP synthesis	3 (0.63%)	0	0	0	1	0	0	1	1
13	amino acid metabolism	3 (0.63%)	0	1	1	0	0	0	0	1
23	nucleotide metabolism	3 (0.63%)	1	0	0	2	0	0	0	0
26.13	misc.acid and other phosphatases	3 (0.63%)	0	0	0	0	2	0	0	1
27.1.1	RNA.processing.splicing	3 (0.63%)	1	0	1	0	1	0	0	0
27.3.3	RNA.regulation of transcription.AP2/EREBP, APETALA2/Ethylene-responsive element binding protein family	3 (0.63%)	0	0	0	0	3	0	0	0
27.3.6	RNA.regulation of transcription.bHLH,Basic Helix-Loop-Helix family	3 (0.63%)	0	0	0	2	0	1	0	0
27.3.66	RNA.regulation of transcription.Psudo ARR transcription factor family	3 (0.63%)	0	0	0	0	3	0	0	0
27.3.67	RNA.regulation of transcription.putative transcription regulator	3 (0.63%)	0	0	0	1	0	0	2	0
28.1.3	DNA.synthesis/chromatin structure.histone	3 (0.63%)	1	0	0	0	0	0	1	1
29.5.11.4.3.2	protein.degradation.ubiquitin.E3.SCF.FBOX	3 (0.63%)	0	0	0	1	1	1	0	0
29.5.3	protein.degradation.cysteine protease	3 (0.63%)	0	0	0	1	1	1	0	0
9.1	mitochondrial electron transport / ATP synthesis.NADH-DH	3 (0.63%)	0	0	0	1	0	0	1	1
34.3	transport.amino acids	3 (0.63%)	0	1	0	1	0	1	0	0
34.7	transport.phosphate	3 (0.63%)	0	1	0	0	0	1	1	0
9.1.2	mitochondrial electron transport / ATP synthesis.NADH-DH.localisation not clear	3 (0.63%)	0	0	0	1	0	0	1	1
1	PS	2 (0.42%)	0	0	0	0	1	0	1	0
1.1	PS.lightreaction	2 (0.42%)	0	0	0	0	1	0	1	0
1.1.40	PS.lightreaction.cyclic electron flow-chlororespiration	2 (0.42%)	0	0	0	0	1	0	1	0
3	minor CHO metabolism	2 (0.42%)	0	1	0	1	0	0	0	0
11.1	lipid metabolism.FA synthesis and FA elongation	2 (0.42%)	0	0	0	0	0	1	0	1
11.8	lipid metabolism.exotics(steroids, squalene etc)	2 (0.42%)	0	0	0	0	0	1	0	1
11.8.1	lipid metabolism.exotics (steroids, squalene etc).sphingolipids	2 (0.42%)	0	0	0	0	0	1	0	1
11.8.1.3	lipid metabolism.exotics (steroids, squalene etc).sphingolipids.ceramide glucosyltransferase	2 (0.42%)	0	0	0	0	0	1	0	1
13.1	amino acid metabolism.synthesis	2 (0.42%)	0	0	1	0	0	0	0	1
13.1.5	amino acid metabolism.synthesis.serine-glycine-cysteine group	2 (0.42%)	0	0	1	0	0	0	0	1
13.1.5.1	amino acid metabolism.synthesis.serine-glycine-cysteine group.serine	2 (0.42%)	0	0	1	0	0	0	0	1
13.1.5.1.1	amino acid metabolism.synthesis.serine-glycine-cysteine group.serine.phosphoglycerate dehydrogenase	2 (0.42%)	0	0	1	0	0	0	0	1
16.1.1	secondary metabolism.isoprenoids.non-mevalonate pathway	2 (0.42%)	1	0	0	1	0	0	0	0
16.1.5	secondary metabolism.isoprenoids.terpenoids	2 (0.42%)	0	1	0	0	0	0	1	0
3.6	minor CHO metabolism.callose	2 (0.42%)	0	1	0	1	0	0	0	0
17.1	hormone metabolism.abscisic acid	2 (0.42%)	0	0	0	0	0	1	0	1
18	Co-factor and vitamine metabolism	2 (0.42%)	0	0	0	0	2	0	0	0
19	tetrapyrrole synthesis	2 (0.42%)	0	0	0	0	0	1	0	1
19.2	tetrapyrrole synthesis.glu-tRNA reductase	2 (0.42%)	0	0	0	0	0	1	0	1
20.1	stress.biotic	2 (0.42%)	1	0	0	0	0	0	1	0
20.2	stress.abiotic	2 (0.42%)	0	0	0	0	1	1	0	0
20.2.99	stress.abiotic.unspecified	2 (0.42%)	0	0	0	0	1	1	0	0
23.2	nucleotide metabolism.degradation	2 (0.42%)	1	0	0	1	0	0	0	0
27.2	RNA.transcription	2 (0.42%)	0	1	0	0	0	0	0	1
27.3.10	RNA.regulation of transcription.C2C2(Zn) YABBY family	2 (0.42%)	0	0	0	0	1	1	0	0
27.3.50	RNA.regulation of transcription.General Transcription	2 (0.42%)	0	0	0	0	0	1	0	1
29.5.11.1	protein.degradation.ubiquitin.ubiquitin	2 (0.42%)	1	0	0	0	1	0	0	0
29.5.5	protein.degradation.serine protease	2 (0.42%)	1	0	0	0	1	0	0	0
30.3	signalling.calcium	2 (0.42%)	1	0	0	0	1	0	0	0
31.3.1	cell.cycle.peptidylprolyl isomerase	2 (0.42%)	0	0	0	1	0	0	0	1
10	cell wall	1 (0.21%)	0	0	0	0	0	0	1	0
10.2	cell wall.cellulose synthesis	1 (0.21%)	0	0	0	0	0	0	1	0
10.2.2	cell wall.cellulose synthesis.COBRA	1 (0.21%)	0	0	0	0	0	0	1	0
11.1.1	lipid metabolism.FA synthesis and FA elongation.Acetyl CoA Carboxylation	1 (0.21%)	0	0	0	0	0	0	0	1
11.1.1.2	lipid metabolism.FA synthesis and FA elongation.Acetyl CoA Carboxylation.heteromeric Complex	1 (0.21%)	0	0	0	0	0	0	0	1
11.1.1.2.1	lipid metabolism.FA synthesis and FA elongation.Acetyl CoA Carboxylation.heteromeric Complex.alpha Carboxyltransferase	1 (0.21%)	0	0	0	0	0	0	0	1
11.1.10	lipid metabolism.FA synthesis and FA elongation.beta ketoacyl CoA synthase	1 (0.21%)	0	0	0	0	0	1	0	0
11.9	lipid metabolism.lipid degradation	1 (0.21%)	0	0	1	0	0	0	0	0
11.9.3	lipid metabolism.lipid degradation.lysophospholipases	1 (0.21%)	0	0	1	0	0	0	0	0
11.9.3.2	lipid metabolism.lipid degradation.lysophospholipases.carboxylesterase	1 (0.21%)	0	0	1	0	0	0	0	0
13.2	amino acid metabolism.degradation	1 (0.21%)	0	1	0	0	0	0	0	0
13.2.3	amino acid metabolism.degradation.aspartate family	1 (0.21%)	0	1	0	0	0	0	0	0
13.2.3.1	amino acid metabolism.degradation.aspartate family.asparagine	1 (0.21%)	0	1	0	0	0	0	0	0
13.2.3.1.1	amino acid metabolism.degradation.aspartate family.asparagine.L-asparaginase	1 (0.21%)	0	1	0	0	0	0	0	0
16.1.1.1	secondary metabolism.isoprenoids.non-mevalonate pathway.DXS	1 (0.21%)	0	0	0	1	0	0	0	0
16.1.1.10	secondary metabolism.isoprenoids.non-mevalonate pathway.geranylgeranyl pyrophosphate synthase	1 (0.21%)	1	0	0	0	0	0	0	0
16.1.2	secondary metabolism.isoprenoids.mevalonate pathway	1 (0.21%)	0	0	0	1	0	0	0	0
16.1.2.6	secondary metabolism.isoprenoids.mevalonate pathway.mevalonate diphosphate decarboxylase	1 (0.21%)	0	0	0	1	0	0	0	0
16.2	secondary metabolism.phenylpropanoids	1 (0.21%)	0	0	0	0	0	0	0	1
17.1.1	hormone metabolism.abscisic acid.synthesis-degradation	1 (0.21%)	0	0	0	0	0	0	0	1
17.1.1.1	hormone metabolism.abscisic acid.synthesis-degradation.synthesis	1 (0.21%)	0	0	0	0	0	0	0	1
17.1.1.1.1	hormone metabolism.abscisic acid.synthesis-degradation.synthesis.zeaxanthin epoxidase	1 (0.21%)	0	0	0	0	0	0	0	1
17.1.2	hormone metabolism.abscisic acid.signal transduction	1 (0.21%)	0	0	0	0	0	1	0	0
17.5	hormone metabolism.ethylene	1 (0.21%)	0	0	0	0	0	0	1	0
17.5.1	hormone metabolism.ethylene.synthesis-degradation	1 (0.21%)	0	0	0	0	0	0	1	0
17.5.1.1	hormone metabolism.ethylene.synthesis-degradation.1-aminocyclopropane-1-carboxylate synthase	1 (0.21%)	0	0	0	0	0	0	1	0
18.3	Co-factor and vitamine metabolism.riboflavin	1 (0.21%)	0	0	0	0	1	0	0	0
18.3.1	Co-factor and vitamine metabolism.riboflavin.GTP cyclohydrolase II	1 (0.21%)	0	0	0	0	1	0	0	0
18.7	Co-factor and vitamine metabolism.iron-sulphur clusters	1 (0.21%)	0	0	0	0	1	0	0	0
20.1.7	stress.biotic.PR-proteins	1 (0.21%)	1	0	0	0	0	0	0	0
23.4	nucleotide metabolism.phosphotransfer and pyrophosphatases	1 (0.21%)	0	0	0	1	0	0	0	0
23.4.1	nucleotide metabolism.phosphotransfer and pyrophosphatases.adenylate kinase	1 (0.21%)	0	0	0	1	0	0	0	0
26.10	misc.cytochrome P450	1 (0.21%)	0	0	0	0	0	0	0	1
26.1	misc.misc2	1 (0.21%)	0	1	0	0	0	0	0	0
26.19	misc.plastocyanin-like	1 (0.21%)	0	0	1	0	0	0	0	0
26.2	misc.UDP glucosyl and glucoronyl transferases	1 (0.21%)	0	0	0	1	0	0	0	0
26.21	misc.protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	1 (0.21%)	0	0	0	0	1	0	0	0
26.8	misc.nitrilases, *nitrile lyases, berberine bridge enzymes, reticuline oxidases, troponine reductases	1 (0.21%)	1	0	0	0	0	0	0	0
27.3.14	RNA.regulation of transcription.CCAAT box binding factor family, HAP2	1 (0.21%)	0	1	0	0	0	0	0	0
27.3.21	RNA.regulation of transcription.GRAS transcription factor family	1 (0.21%)	0	0	0	0	1	0	0	0
27.3.35	RNA.regulation of transcription.bZIP transcription factor family	1 (0.21%)	0	0	0	0	0	0	0	1
27.3.4	RNA.regulation of transcription.ARF, Auxin Response Factor family	1 (0.21%)	0	0	0	0	0	0	0	1
27.3.41	RNA.regulation of transcription.B3 transcription factor family	1 (0.21%)	0	0	0	0	0	1	0	0
27.3.65	RNA.regulation of transcription.Polycomb Group (PcG)	1 (0.21%)	1	0	0	0	0	0	0	0
27.3.80	RNA.regulation of transcription.zf-HD	1 (0.21%)	0	1	0	0	0	0	0	0
28.1.3.1	DNA.synthesis/chromatin structure.histone.H1	1 (0.21%)	1	0	0	0	0	0	0	0
29.2	protein.synthesis	1 (0.21%)	1	0	0	0	0	0	0	0
29.2.1.2.1.11	protein.synthesis.ribosomal protein.eukaryotic.40S subunit.S11	1 (0.21%)	0	1	0	0	0	0	0	0
29.2.1.2.1.9	protein.synthesis.ribosomal protein.eukaryotic.40S subunit.S9	1 (0.21%)	0	0	0	0	1	0	0	0
29.2.2	protein.synthesis.ribosome biogenesis	1 (0.21%)	1	0	0	0	0	0	0	0
29.2.2.3	protein.synthesis.ribosome biogenesis.Pre-rRNA processing and modifications	1 (0.21%)	1	0	0	0	0	0	0	0
29.2.2.3.1	protein.synthesis.ribosome biogenesis.Pre-rRNA processing and modifications.snoRNPs	1 (0.21%)	1	0	0	0	0	0	0	0
29.3	protein.targeting	1 (0.21%)	0	0	0	0	0	0	0	1
29.3.99	protein.targeting.unknown	1 (0.21%)	0	0	0	0	0	0	0	1
29.5.1	protein.degradation.subtilases	1 (0.21%)	0	1	0	0	0	0	0	0
29.5.11.3	protein.degradation.ubiquitin.E2	1 (0.21%)	0	0	0	0	0	1	0	0
29.5.11.4.5.1	protein.degradation.ubiquitin.E3.BTB/POZ Cullin3.Cullin3	1 (0.21%)	0	0	0	0	0	0	0	1
29.5.9	protein.degradation.AAA type	1 (0.21%)	0	0	0	1	0	0	0	0
30.2.17	signalling.receptor kinases.DUF 26	1 (0.21%)	0	0	0	0	0	1	0	0
30.6	signalling.MAP kinases	1 (0.21%)	0	0	0	0	0	1	0	0
34.10	transport.nucleotides	1 (0.21%)	0	0	0	0	0	0	1	0
34.1	transport.p- and v-ATPases	1 (0.21%)	0	0	1	0	0	0	0	0
34.1.1	transport.p- and v-ATPases.H+-transporting two-sector ATPase	1 (0.21%)	0	0	1	0	0	0	0	0
34.13	transport.peptides and oligopeptides	1 (0.21%)	0	0	0	0	0	0	0	1
34.2	transport.sugars	1 (0.21%)	0	0	0	0	0	1	0	0
34.23	transport.hormones	1 (0.21%)	0	0	0	0	0	0	1	0
34.23.1	transport.hormones.auxin	1 (0.21%)	0	0	0	0	0	0	1	0