PLAZA 3.0 Dicots : Binding Sites

MapMan terms associated with a binding site

Binding site: Matrix_428
Name: SEP4
Description: N/A

#Associated genes: 509
#Associated MapMan terms: 154

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MapMan	Description	#Associated genes	ath	bra	egr	gma	ptr	ppe	sly	vvi
27	RNA	123 (24.17%)	9	15	9	25	26	17	10	12
27.3	RNA.regulation of transcription	103 (20.24%)	9	11	9	23	19	13	8	11
29	protein	39 (7.66%)	3	4	1	11	9	6	2	3
29.4	protein.postranslational modification	26 (5.11%)	1	4	0	8	7	4	1	1
31	cell	24 (4.72%)	2	0	1	8	4	3	4	2
27.3.24	RNA.regulation of transcription.MADS box transcription factor family	19 (3.73%)	1	1	3	3	5	2	2	2
30	signalling	19 (3.73%)	4	3	0	2	9	1	0	0
34	transport	19 (3.73%)	1	6	2	4	1	2	2	1
31.4	cell.vesicle transport	17 (3.34%)	2	0	1	7	3	1	2	1
33	development	17 (3.34%)	3	3	0	6	3	1	1	0
26	misc	15 (2.95%)	1	0	4	5	1	1	2	1
27.1	RNA.processing	15 (2.95%)	0	3	0	3	4	3	1	1
27.3.11	RNA.regulation of transcription.C2H2 zinc finger family	14 (2.75%)	2	1	1	3	4	1	1	1
27.3.99	RNA.regulation of transcription.unclassified	13 (2.55%)	0	2	1	2	3	1	2	2
33.99	development.unspecified	12 (2.36%)	1	2	0	4	3	1	1	0
10	cell wall	11 (2.16%)	2	2	1	3	2	0	0	1
17	hormone metabolism	11 (2.16%)	1	1	0	3	1	3	2	0
3	minor CHO metabolism	10 (1.96%)	1	1	1	2	1	2	1	1
27.3.22	RNA.regulation of transcription.HB,Homeobox transcription factor family	9 (1.77%)	0	1	1	0	3	3	0	1
3.6	minor CHO metabolism.callose	8 (1.57%)	1	0	1	2	1	1	1	1
20	stress	8 (1.57%)	1	3	1	2	0	1	0	0
28	DNA	8 (1.57%)	1	0	1	3	2	0	1	0
29.4.1	protein.postranslational modification.kinase	8 (1.57%)	0	1	0	3	1	2	1	0
29.4.1.57	protein.postranslational modification.kinase.receptor like cytoplasmatic kinase VII	8 (1.57%)	0	1	0	3	1	2	1	0
30.3	signalling.calcium	8 (1.57%)	2	2	0	1	2	1	0	0
10.2	cell wall.cellulose synthesis	7 (1.38%)	1	2	1	2	0	0	0	1
27.1.1	RNA.processing.splicing	7 (1.38%)	0	0	0	2	2	2	1	0
27.3.54	RNA.regulation of transcription.Histone acetyltransferases	7 (1.38%)	3	1	0	1	2	0	0	0
20.2	stress.abiotic	6 (1.18%)	1	3	1	1	0	0	0	0
28.1	DNA.synthesis/chromatin structure	6 (1.18%)	0	0	1	3	2	0	0	0
30.5	signalling.G-proteins	6 (1.18%)	1	1	0	0	4	0	0	0
20.2.3	stress.abiotic.drought/salt	5 (0.98%)	0	3	1	1	0	0	0	0
27.4	RNA.RNA binding	5 (0.98%)	0	1	0	0	2	1	1	0
29.3	protein.targeting	5 (0.98%)	1	0	0	1	0	1	0	2
31.1	cell.organisation	5 (0.98%)	0	0	0	1	1	1	1	1
34.99	transport.misc	5 (0.98%)	0	0	0	2	1	0	1	1
11	lipid metabolism	4 (0.79%)	0	3	0	0	0	0	1	0
16	secondary metabolism	4 (0.79%)	0	0	1	0	1	0	0	2
27.3.1	RNA.regulation of transcription.ABI3/VP1-related B3-domain-containing transcription factor family	4 (0.79%)	1	2	0	0	0	1	0	0
27.3.3	RNA.regulation of transcription.AP2/EREBP, APETALA2/Ethylene-responsive element binding protein family	4 (0.79%)	0	0	0	0	0	2	1	1
27.3.60	RNA.regulation of transcription.NIN-like bZIP-related family	4 (0.79%)	0	0	1	1	0	0	1	1
2	major CHO metabolism	3 (0.59%)	0	1	1	1	0	0	0	0
17.2.1	hormone metabolism.auxin.synthesis-degradation	3 (0.59%)	1	0	0	1	0	0	1	0
2.1	major CHO metabolism.synthesis	3 (0.59%)	0	1	1	1	0	0	0	0
7	OPP	3 (0.59%)	0	1	0	0	1	1	0	0
11.9	lipid metabolism.lipid degradation	3 (0.59%)	0	3	0	0	0	0	0	0
16.2	secondary metabolism.phenylpropanoids	3 (0.59%)	0	0	1	0	1	0	0	1
17.2	hormone metabolism.auxin	3 (0.59%)	1	0	0	1	0	0	1	0
17.5	hormone metabolism.ethylene	3 (0.59%)	0	0	0	0	1	1	1	0
2.1.2	major CHO metabolism.synthesis.starch	3 (0.59%)	0	1	1	1	0	0	0	0
23.1	nucleotide metabolism.synthesis	3 (0.59%)	0	0	0	2	0	0	1	0
23.1.2	nucleotide metabolism.synthesis.purine	3 (0.59%)	0	0	0	2	0	0	1	0
23.1.2.3	nucleotide metabolism.synthesis.purine.GAR transformylase	3 (0.59%)	0	0	0	2	0	0	1	0
26.2	misc.UDP glucosyl and glucoronyl transferases	3 (0.59%)	1	0	1	0	0	0	1	0
26.8	misc.nitrilases, *nitrile lyases, berberine bridge enzymes, reticuline oxidases, troponine reductases	3 (0.59%)	0	0	1	1	1	0	0	0
27.3.25	RNA.regulation of transcription.MYB domain transcription factor family	3 (0.59%)	0	0	0	2	0	1	0	0
27.3.35	RNA.regulation of transcription.bZIP transcription factor family	3 (0.59%)	1	0	2	0	0	0	0	0
27.3.4	RNA.regulation of transcription.ARF, Auxin Response Factor family	3 (0.59%)	1	0	0	1	1	0	0	0
27.3.6	RNA.regulation of transcription.bHLH,Basic Helix-Loop-Helix family	3 (0.59%)	0	0	0	3	0	0	0	0
29.2.1.1.1.1.2	protein.synthesis.ribosomal protein.prokaryotic.chloroplast.30S subunit.S2	3 (0.59%)	0	0	0	0	0	0	3	0
29.3.4	protein.targeting.secretory pathway	3 (0.59%)	1	0	0	1	0	1	0	0
29.5.7	protein.degradation.metalloprotease	3 (0.59%)	0	0	1	1	0	0	1	0
7.1	OPP.oxidative PP	3 (0.59%)	0	1	0	0	1	1	0	0
29.5	protein.degradation	3 (0.59%)	0	0	1	1	0	0	1	0
33.3	development.squamosa promoter binding like (SPL)	3 (0.59%)	1	0	0	2	0	0	0	0
34.12	transport.metal	3 (0.59%)	0	3	0	0	0	0	0	0
34.16	transport.ABC transporters and multidrug resistance systems	3 (0.59%)	0	2	0	0	0	0	1	0
34.2	transport.sugars	3 (0.59%)	1	0	1	0	0	1	0	0
7.1.3	OPP.oxidative PP.6-phosphogluconate dehydrogenase	3 (0.59%)	0	1	0	0	1	1	0	0
23	nucleotide metabolism	3 (0.59%)	0	0	0	2	0	0	1	0
10.7	cell wall.modification	2 (0.39%)	0	0	0	1	1	0	0	0
16.2.1	secondary metabolism.phenylpropanoids.lignin biosynthesis	2 (0.39%)	0	0	1	0	0	0	0	1
16.2.1.1	secondary metabolism.phenylpropanoids.lignin biosynthesis.PAL	2 (0.39%)	0	0	1	0	0	0	0	1
17.1	hormone metabolism.abscisic acid	2 (0.39%)	0	1	0	0	0	1	0	0
17.1.2	hormone metabolism.abscisic acid.signal transduction	2 (0.39%)	0	1	0	0	0	1	0	0
17.5.2	hormone metabolism.ethylene.signal transduction	2 (0.39%)	0	0	0	0	0	1	1	0
17.6	hormone metabolism.gibberelin	2 (0.39%)	0	0	0	2	0	0	0	0
17.6.2	hormone metabolism.gibberelin.signal transduction	2 (0.39%)	0	0	0	2	0	0	0	0
2.1.2.2	major CHO metabolism.synthesis.starch.starch synthase	2 (0.39%)	0	0	1	1	0	0	0	0
20.1	stress.biotic	2 (0.39%)	0	0	0	1	0	1	0	0
21	redox	2 (0.39%)	1	0	0	0	1	0	0	0
21.2	redox.ascorbate and glutathione	2 (0.39%)	1	0	0	0	1	0	0	0
21.2.2	redox.ascorbate and glutathione.glutathione	2 (0.39%)	1	0	0	0	1	0	0	0
26.13	misc.acid and other phosphatases	2 (0.39%)	0	0	0	1	0	0	1	0
26.9	misc.glutathione S transferases	2 (0.39%)	0	0	1	1	0	0	0	0
27.3.20	RNA.regulation of transcription.G2-like transcription factor family, GARP	2 (0.39%)	0	0	0	2	0	0	0	0
27.3.21	RNA.regulation of transcription.GRAS transcription factor family	2 (0.39%)	0	0	0	2	0	0	0	0
27.3.40	RNA.regulation of transcription.Aux/IAA family	2 (0.39%)	0	1	0	1	0	0	0	0
27.3.44	RNA.regulation of transcription.Chromatin Remodeling Factors	2 (0.39%)	0	0	0	1	0	0	1	0
27.3.65	RNA.regulation of transcription.Polycomb Group (PcG)	2 (0.39%)	0	1	0	1	0	0	0	0
27.3.67	RNA.regulation of transcription.putative transcription regulator	2 (0.39%)	0	1	0	0	1	0	0	0
29.1	protein.aa activation	2 (0.39%)	1	0	0	0	1	0	0	0
29.1.9	protein.aa activation.valine-tRNA ligase	2 (0.39%)	1	0	0	0	1	0	0	0
29.2	protein.synthesis	2 (0.39%)	0	0	0	0	1	1	0	0
29.2.1.99.99	protein.synthesis.ribosomal protein.unknown.unknown	2 (0.39%)	0	0	0	0	1	1	0	0
29.2.3	protein.synthesis.initiation	2 (0.39%)	0	0	0	0	1	1	0	0
29.3.4.3	protein.targeting.secretory pathway.vacuole	2 (0.39%)	0	0	0	1	0	1	0	0
29.5.11.4.2	protein.degradation.ubiquitin.E3.RING	2 (0.39%)	1	1	0	0	0	0	0	0
30.2	signalling.receptor kinases	2 (0.39%)	0	0	0	0	2	0	0	0
30.2.17	signalling.receptor kinases.DUF 26	2 (0.39%)	0	0	0	0	2	0	0	0
31.2	cell.division	2 (0.39%)	0	0	0	0	0	1	1	0
33.1	development.storage proteins	2 (0.39%)	1	1	0	0	0	0	0	0
34.14	transport.unspecified cations	2 (0.39%)	0	1	1	0	0	0	0	0
1	PS	1 (0.20%)	0	0	0	0	0	0	1	0
1.1	PS.lightreaction	1 (0.20%)	0	0	0	0	0	0	1	0
1.1.40	PS.lightreaction.cyclic electron flow-chlororespiration	1 (0.20%)	0	0	0	0	0	0	1	0
5	fermentation	1 (0.20%)	0	0	0	1	0	0	0	0
10.6	cell wall.degradation	1 (0.20%)	0	0	0	0	1	0	0	0
10.6.3	cell wall.degradation.pectate lyases and polygalacturonases	1 (0.20%)	0	0	0	0	1	0	0	0
10.8	cell wall.pectin*esterases	1 (0.20%)	1	0	0	0	0	0	0	0
10.8.2	cell wall.pectin*esterases.acetyl esterase	1 (0.20%)	1	0	0	0	0	0	0	0
11.10	lipid metabolism.glycolipid synthesis	1 (0.20%)	0	0	0	0	0	0	1	0
11.10.1	lipid metabolism.glycolipid synthesis.MGDG synthase	1 (0.20%)	0	0	0	0	0	0	1	0
11.9.2	lipid metabolism.lipid degradation.lipases	1 (0.20%)	0	1	0	0	0	0	0	0
11.9.3	lipid metabolism.lipid degradation.lysophospholipases	1 (0.20%)	0	1	0	0	0	0	0	0
11.9.4	lipid metabolism.lipid degradation.beta-oxidation	1 (0.20%)	0	1	0	0	0	0	0	0
11.9.4.9	lipid metabolism.lipid degradation.beta-oxidation.multifunctional	1 (0.20%)	0	1	0	0	0	0	0	0
16.1	secondary metabolism.isoprenoids	1 (0.20%)	0	0	0	0	0	0	0	1
16.1.1	secondary metabolism.isoprenoids.non-mevalonate pathway	1 (0.20%)	0	0	0	0	0	0	0	1
16.1.1.1	secondary metabolism.isoprenoids.non-mevalonate pathway.DXS	1 (0.20%)	0	0	0	0	0	0	0	1
17.5.1	hormone metabolism.ethylene.synthesis-degradation	1 (0.20%)	0	0	0	0	1	0	0	0
17.7	hormone metabolism.jasmonate	1 (0.20%)	0	0	0	0	0	1	0	0
17.7.1	hormone metabolism.jasmonate.synthesis-degradation	1 (0.20%)	0	0	0	0	0	1	0	0
17.7.1.2	hormone metabolism.jasmonate.synthesis-degradation.lipoxygenase	1 (0.20%)	0	0	0	0	0	1	0	0
20.2.99	stress.abiotic.unspecified	1 (0.20%)	1	0	0	0	0	0	0	0
3.4	minor CHO metabolism.myo-inositol	1 (0.20%)	0	1	0	0	0	0	0	0
3.5	minor CHO metabolism.others	1 (0.20%)	0	0	0	0	0	1	0	0
5.10	fermentation.aldehyde dehydrogenase	1 (0.20%)	0	0	0	1	0	0	0	0
26.10	misc.cytochrome P450	1 (0.20%)	0	0	0	1	0	0	0	0
26.1	misc.misc2	1 (0.20%)	0	0	0	0	0	0	0	1
26.12	misc.peroxidases	1 (0.20%)	0	0	0	1	0	0	0	0
26.22	misc.short chain dehydrogenase/reductase (SDR)	1 (0.20%)	0	0	1	0	0	0	0	0
26.4	misc.beta 1,3 glucan hydrolases	1 (0.20%)	0	0	0	0	0	1	0	0
27.2	RNA.transcription	1 (0.20%)	0	0	0	0	1	0	0	0
27.3.10	RNA.regulation of transcription.C2C2(Zn) YABBY family	1 (0.20%)	0	0	0	0	0	0	0	1
27.3.26	RNA.regulation of transcription.MYB-related transcription factor family	1 (0.20%)	0	0	0	0	1	0	0	0
27.3.50	RNA.regulation of transcription.General Transcription	1 (0.20%)	0	0	0	0	0	0	0	1
27.3.59	RNA.regulation of transcription.Methyl binding domain proteins	1 (0.20%)	0	0	0	0	0	1	0	0
27.3.68	RNA.regulation of transcription.PWWP domain protein	1 (0.20%)	0	0	0	0	0	0	0	1
28.2	DNA.repair	1 (0.20%)	1	0	0	0	0	0	0	0
28.99	DNA.unspecified	1 (0.20%)	0	0	0	0	0	0	1	0
29.2.1.2.2.37	protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L37	1 (0.20%)	0	1	0	0	0	0	0	0
29.3.1	protein.targeting.nucleus	1 (0.20%)	0	0	0	0	0	0	0	1
29.3.4.1	protein.targeting.secretory pathway.ER	1 (0.20%)	1	0	0	0	0	0	0	0
29.3.5	protein.targeting.peroxisomes	1 (0.20%)	0	0	0	0	0	0	0	1
29.8	protein.assembly and cofactor ligation	1 (0.20%)	0	0	0	1	0	0	0	0
3.4.4	minor CHO metabolism.myo-inositol.myo inositol oxygenases	1 (0.20%)	0	1	0	0	0	0	0	0
30.11	signalling.light	1 (0.20%)	0	0	0	0	1	0	0	0
30.6	signalling.MAP kinases	1 (0.20%)	1	0	0	0	0	0	0	0
30.99	signalling.unspecified	1 (0.20%)	0	0	0	1	0	0	0	0
34.13	transport.peptides and oligopeptides	1 (0.20%)	0	0	0	0	0	1	0	0
34.19	transport.Major Intrinsic Proteins	1 (0.20%)	0	0	0	1	0	0	0	0
34.19.2	transport.Major Intrinsic Proteins.TIP	1 (0.20%)	0	0	0	1	0	0	0	0
34.6	transport.sulphate	1 (0.20%)	0	0	0	1	0	0	0	0