PLAZA 3.0 Dicots : Binding Sites

MapMan terms associated with a binding site

Binding site: Matrix_386
Name: AGL1
Description: DNA binding properties of two Arabidopsis MADS domain proteins: binding consensus and dimer formation

#Associated genes: 582
#Associated MapMan terms: 163

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MapMan	Description	#Associated genes	ath	bra	egr	gma	ptr	ppe	sly	vvi
27	RNA	119 (20.45%)	8	14	5	27	24	16	10	15
27.3	RNA.regulation of transcription	103 (17.70%)	7	14	4	21	21	14	10	12
29	protein	53 (9.11%)	3	6	1	14	12	6	4	7
30	signalling	43 (7.39%)	1	2	3	14	7	6	3	7
29.4	protein.postranslational modification	37 (6.36%)	2	3	1	11	9	3	3	5
34	transport	23 (3.95%)	1	2	2	3	3	3	5	4
33	development	22 (3.78%)	2	5	0	3	2	2	5	3
33.99	development.unspecified	22 (3.78%)	2	5	0	3	2	2	5	3
31	cell	20 (3.44%)	2	2	3	3	6	1	0	3
30.11	signalling.light	19 (3.26%)	0	2	1	6	4	1	1	4
31.1	cell.organisation	17 (2.92%)	2	1	3	3	4	1	0	3
27.3.25	RNA.regulation of transcription.MYB domain transcription factor family	14 (2.41%)	2	2	0	2	4	1	2	1
29.4.1	protein.postranslational modification.kinase	14 (2.41%)	0	0	0	7	1	3	1	2
29.4.1.57	protein.postranslational modification.kinase.receptor like cytoplasmatic kinase VII	14 (2.41%)	0	0	0	7	1	3	1	2
20	stress	13 (2.23%)	2	0	1	1	4	1	2	2
26	misc	13 (2.23%)	2	0	2	3	3	1	0	2
27.3.24	RNA.regulation of transcription.MADS box transcription factor family	13 (2.23%)	0	3	1	1	4	1	1	2
17	hormone metabolism	12 (2.06%)	0	0	0	6	2	4	0	0
30.2	signalling.receptor kinases	12 (2.06%)	1	0	2	3	2	2	0	2
20.2	stress.abiotic	10 (1.72%)	2	0	0	1	4	1	2	0
29.5	protein.degradation	10 (1.72%)	1	2	0	1	2	2	1	1
27.4	RNA.RNA binding	9 (1.55%)	0	0	0	5	1	1	0	2
28	DNA	9 (1.55%)	0	0	0	4	0	2	1	2
30.5	signalling.G-proteins	9 (1.55%)	0	0	0	3	1	3	1	1
27.3.22	RNA.regulation of transcription.HB,Homeobox transcription factor family	8 (1.37%)	0	1	0	0	2	2	1	2
34.99	transport.misc	8 (1.37%)	1	0	1	1	1	0	2	2
27.3.6	RNA.regulation of transcription.bHLH,Basic Helix-Loop-Helix family	7 (1.20%)	1	1	1	1	1	0	0	2
27.3.99	RNA.regulation of transcription.unclassified	7 (1.20%)	0	0	0	2	1	2	1	1
29.5.11.4.2	protein.degradation.ubiquitin.E3.RING	7 (1.20%)	0	0	1	3	0	2	0	1
30.2.11	signalling.receptor kinases.leucine rich repeat XI	7 (1.20%)	0	0	2	2	1	1	0	1
16	secondary metabolism	6 (1.03%)	1	0	1	2	1	0	1	0
17.2	hormone metabolism.auxin	6 (1.03%)	0	0	0	3	1	2	0	0
17.2.3	hormone metabolism.auxin.induced-regulated-responsive-activated	6 (1.03%)	0	0	0	3	1	2	0	0
27.3.26	RNA.regulation of transcription.MYB-related transcription factor family	6 (1.03%)	1	1	0	2	2	0	0	0
27.3.35	RNA.regulation of transcription.bZIP transcription factor family	6 (1.03%)	1	2	0	2	0	0	0	1
28.1	DNA.synthesis/chromatin structure	6 (1.03%)	0	0	0	3	0	2	0	1
34.3	transport.amino acids	6 (1.03%)	0	1	0	1	1	2	1	0
16.1	secondary metabolism.isoprenoids	5 (0.86%)	1	0	0	2	1	0	1	0
20.2.3	stress.abiotic.drought/salt	5 (0.86%)	1	0	0	0	2	0	2	0
27.1	RNA.processing	5 (0.86%)	1	0	1	0	2	1	0	0
27.3.11	RNA.regulation of transcription.C2H2 zinc finger family	5 (0.86%)	0	1	0	2	1	0	0	1
29.5.11.4.3.2	protein.degradation.ubiquitin.E3.SCF.FBOX	5 (0.86%)	0	0	0	0	3	2	0	0
34.18	transport.unspecified anions	5 (0.86%)	0	0	1	1	1	0	2	0
10	cell wall	4 (0.69%)	0	1	0	2	0	1	0	0
11	lipid metabolism	4 (0.69%)	0	1	0	0	0	2	0	1
26.10	misc.cytochrome P450	4 (0.69%)	0	0	2	0	0	1	0	1
2	major CHO metabolism	3 (0.52%)	1	0	0	1	0	0	0	1
11.8.1	lipid metabolism.exotics (steroids, squalene etc).sphingolipids	3 (0.52%)	0	1	0	0	0	1	0	1
2.2	major CHO metabolism.degradation	3 (0.52%)	1	0	0	1	0	0	0	1
11.8	lipid metabolism.exotics(steroids, squalene etc)	3 (0.52%)	0	1	0	0	0	1	0	1
17.1	hormone metabolism.abscisic acid	3 (0.52%)	0	0	0	3	0	0	0	0
2.2.1	major CHO metabolism.degradation.sucrose	3 (0.52%)	1	0	0	1	0	0	0	1
2.2.1.4	major CHO metabolism.degradation.sucrose.hexokinase	3 (0.52%)	1	0	0	1	0	0	0	1
20.1	stress.biotic	3 (0.52%)	0	0	1	0	0	0	0	2
20.2.99	stress.abiotic.unspecified	3 (0.52%)	0	0	0	0	2	1	0	0
21	redox	3 (0.52%)	0	0	0	1	2	0	0	0
26.21	misc.protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	3 (0.52%)	0	0	0	0	2	0	0	1
27.3.10	RNA.regulation of transcription.C2C2(Zn) YABBY family	3 (0.52%)	0	1	0	0	1	1	0	0
27.3.14	RNA.regulation of transcription.CCAAT box binding factor family, HAP2	3 (0.52%)	0	0	0	1	0	1	0	1
27.3.21	RNA.regulation of transcription.GRAS transcription factor family	3 (0.52%)	0	0	0	0	1	1	1	0
27.3.3	RNA.regulation of transcription.AP2/EREBP, APETALA2/Ethylene-responsive element binding protein family	3 (0.52%)	0	0	0	0	0	1	2	0
27.3.54	RNA.regulation of transcription.Histone acetyltransferases	3 (0.52%)	1	1	0	1	0	0	0	0
27.3.69	RNA.regulation of transcription.SET-domain transcriptional regulator family	3 (0.52%)	0	0	1	1	0	1	0	0
28.2	DNA.repair	3 (0.52%)	0	0	0	1	0	0	1	1
29.3	protein.targeting	3 (0.52%)	0	1	0	0	1	1	0	0
29.5.11	protein.degradation.ubiquitin	3 (0.52%)	0	1	0	0	0	0	1	1
29.5.5	protein.degradation.serine protease	3 (0.52%)	1	0	0	0	1	1	0	0
30.4	signalling.phosphinositides	3 (0.52%)	0	0	0	2	0	0	1	0
30.4.1	signalling.phosphinositides.phosphatidylinositol-4-phosphate 5-kinase	3 (0.52%)	0	0	0	2	0	0	1	0
1	PS	2 (0.34%)	0	0	0	0	0	0	2	0
1.1	PS.lightreaction	2 (0.34%)	0	0	0	0	0	0	2	0
10.7	cell wall.modification	2 (0.34%)	0	1	0	1	0	0	0	0
11.8.1.3	lipid metabolism.exotics (steroids, squalene etc).sphingolipids.ceramide glucosyltransferase	2 (0.34%)	0	0	0	0	0	1	0	1
13	amino acid metabolism	2 (0.34%)	0	0	0	1	0	0	1	0
16.1.1	secondary metabolism.isoprenoids.non-mevalonate pathway	2 (0.34%)	1	0	0	1	0	0	0	0
17.1.2	hormone metabolism.abscisic acid.signal transduction	2 (0.34%)	0	0	0	2	0	0	0	0
17.5	hormone metabolism.ethylene	2 (0.34%)	0	0	0	0	1	1	0	0
20.2.1	stress.abiotic.heat	2 (0.34%)	1	0	0	1	0	0	0	0
21.4	redox.glutaredoxins	2 (0.34%)	0	0	0	0	2	0	0	0
26.22	misc.short chain dehydrogenase/reductase (SDR)	2 (0.34%)	0	0	0	1	1	0	0	0
27.1.2	RNA.processing.RNA helicase	2 (0.34%)	0	0	1	0	0	1	0	0
27.2	RNA.transcription	2 (0.34%)	0	0	0	1	0	0	0	1
27.3.32	RNA.regulation of transcription.WRKY domain transcription factor family	2 (0.34%)	0	0	0	0	1	1	0	0
27.3.37	RNA.regulation of transcription.AS2,Lateral Organ Boundaries Gene Family	2 (0.34%)	0	0	0	1	0	1	0	0
27.3.50	RNA.regulation of transcription.General Transcription	2 (0.34%)	0	0	0	0	0	1	0	1
27.3.80	RNA.regulation of transcription.zf-HD	2 (0.34%)	0	1	0	0	1	0	0	0
29.2	protein.synthesis	2 (0.34%)	0	0	0	2	0	0	0	0
29.2.1.2.2.38	protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L38	2 (0.34%)	0	0	0	0	0	1	1	0
29.2.3	protein.synthesis.initiation	2 (0.34%)	0	0	0	2	0	0	0	0
29.3.4	protein.targeting.secretory pathway	2 (0.34%)	0	1	0	0	1	0	0	0
29.3.4.3	protein.targeting.secretory pathway.vacuole	2 (0.34%)	0	1	0	0	1	0	0	0
30.2.1	signalling.receptor kinases.leucine rich repeat I	2 (0.34%)	1	0	0	0	0	0	0	1
30.2.17	signalling.receptor kinases.DUF 26	2 (0.34%)	0	0	0	1	0	1	0	0
31.4	cell.vesicle transport	2 (0.34%)	0	1	0	0	1	0	0	0
1.1.1	PS.lightreaction.photosystem II	1 (0.17%)	0	0	0	0	0	0	1	0
1.1.1.2	PS.lightreaction.photosystem II.PSII polypeptide subunits	1 (0.17%)	0	0	0	0	0	0	1	0
1.1.40	PS.lightreaction.cyclic electron flow-chlororespiration	1 (0.17%)	0	0	0	0	0	0	1	0
3	minor CHO metabolism	1 (0.17%)	0	1	0	0	0	0	0	0
9	mitochondrial electron transport / ATP synthesis	1 (0.17%)	0	0	0	0	0	0	1	0
10.2	cell wall.cellulose synthesis	1 (0.17%)	0	0	0	0	0	1	0	0
10.5	cell wall.cell wall proteins	1 (0.17%)	0	0	0	1	0	0	0	0
10.5.4	cell wall.cell wall proteins.HRGP	1 (0.17%)	0	0	0	1	0	0	0	0
11.1	lipid metabolism.FA synthesis and FA elongation	1 (0.17%)	0	0	0	0	0	1	0	0
11.1.10	lipid metabolism.FA synthesis and FA elongation.beta ketoacyl CoA synthase	1 (0.17%)	0	0	0	0	0	1	0	0
12	N-metabolism	1 (0.17%)	0	0	0	0	1	0	0	0
12.2	N-metabolism.ammonia metabolism	1 (0.17%)	0	0	0	0	1	0	0	0
12.2.1	N-metabolism.ammonia metabolism.glutamate synthase	1 (0.17%)	0	0	0	0	1	0	0	0
13.1	amino acid metabolism.synthesis	1 (0.17%)	0	0	0	0	0	0	1	0
13.1.6	amino acid metabolism.synthesis.aromatic aa	1 (0.17%)	0	0	0	0	0	0	1	0
13.1.6.5	amino acid metabolism.synthesis.aromatic aa.tryptophan	1 (0.17%)	0	0	0	0	0	0	1	0
13.1.6.5.1	amino acid metabolism.synthesis.aromatic aa.tryptophan.anthranilate synthase	1 (0.17%)	0	0	0	0	0	0	1	0
13.2	amino acid metabolism.degradation	1 (0.17%)	0	0	0	1	0	0	0	0
13.2.5	amino acid metabolism.degradation.serine-glycine-cysteine group	1 (0.17%)	0	0	0	1	0	0	0	0
13.2.5.2	amino acid metabolism.degradation.serine-glycine-cysteine group.glycine	1 (0.17%)	0	0	0	1	0	0	0	0
16.1.1.1	secondary metabolism.isoprenoids.non-mevalonate pathway.DXS	1 (0.17%)	0	0	0	1	0	0	0	0
16.1.1.10	secondary metabolism.isoprenoids.non-mevalonate pathway.geranylgeranyl pyrophosphate synthase	1 (0.17%)	1	0	0	0	0	0	0	0
16.1.5	secondary metabolism.isoprenoids.terpenoids	1 (0.17%)	0	0	0	0	0	0	1	0
16.2	secondary metabolism.phenylpropanoids	1 (0.17%)	0	0	1	0	0	0	0	0
16.2.1	secondary metabolism.phenylpropanoids.lignin biosynthesis	1 (0.17%)	0	0	1	0	0	0	0	0
16.2.1.10	secondary metabolism.phenylpropanoids.lignin biosynthesis.CAD	1 (0.17%)	0	0	1	0	0	0	0	0
17.1.3	hormone metabolism.abscisic acid.induced-regulated-responsive-activated	1 (0.17%)	0	0	0	1	0	0	0	0
17.5.1	hormone metabolism.ethylene.synthesis-degradation	1 (0.17%)	0	0	0	0	1	0	0	0
17.5.3	hormone metabolism.ethylene.induced-regulated-responsive-activated	1 (0.17%)	0	0	0	0	0	1	0	0
17.6	hormone metabolism.gibberelin	1 (0.17%)	0	0	0	0	0	1	0	0
17.6.3	hormone metabolism.gibberelin.induced-regulated-responsive-activated	1 (0.17%)	0	0	0	0	0	1	0	0
20.1.7	stress.biotic.PR-proteins	1 (0.17%)	0	0	1	0	0	0	0	0
21.2	redox.ascorbate and glutathione	1 (0.17%)	0	0	0	1	0	0	0	0
21.2.1	redox.ascorbate and glutathione.ascorbate	1 (0.17%)	0	0	0	1	0	0	0	0
26.16	misc.myrosinases-lectin-jacalin	1 (0.17%)	0	0	0	1	0	0	0	0
26.2	misc.UDP glucosyl and glucoronyl transferases	1 (0.17%)	1	0	0	0	0	0	0	0
26.4	misc.beta 1,3 glucan hydrolases	1 (0.17%)	0	0	0	1	0	0	0	0
26.4.1	misc.beta 1,3 glucan hydrolases.glucan endo-1,3-beta-glucosidase	1 (0.17%)	0	0	0	1	0	0	0	0
26.8	misc.nitrilases, *nitrile lyases, berberine bridge enzymes, reticuline oxidases, troponine reductases	1 (0.17%)	1	0	0	0	0	0	0	0
27.1.1	RNA.processing.splicing	1 (0.17%)	0	0	0	0	1	0	0	0
27.1.19	RNA.processing.ribonucleases	1 (0.17%)	1	0	0	0	0	0	0	0
27.3.1	RNA.regulation of transcription.ABI3/VP1-related B3-domain-containing transcription factor family	1 (0.17%)	0	0	0	1	0	0	0	0
27.3.12	RNA.regulation of transcription.C3H zinc finger family	1 (0.17%)	0	0	0	1	0	0	0	0
27.3.15	RNA.regulation of transcription.CCAAT box binding factor family, HAP3	1 (0.17%)	0	0	0	0	0	0	1	0
27.3.16	RNA.regulation of transcription.CCAAT box binding factor family, HAP5	1 (0.17%)	1	0	0	0	0	0	0	0
27.3.2	RNA.regulation of transcription.Alfin-like	1 (0.17%)	0	0	0	0	0	0	1	0
27.3.20	RNA.regulation of transcription.G2-like transcription factor family, GARP	1 (0.17%)	0	0	0	1	0	0	0	0
27.3.29	RNA.regulation of transcription.TCP transcription factor family	1 (0.17%)	0	0	0	1	0	0	0	0
27.3.30	RNA.regulation of transcription.Trihelix, Triple-Helix transcription factor family	1 (0.17%)	0	0	1	0	0	0	0	0
27.3.40	RNA.regulation of transcription.Aux/IAA family	1 (0.17%)	0	0	0	0	1	0	0	0
27.3.67	RNA.regulation of transcription.putative transcription regulator	1 (0.17%)	0	0	0	1	0	0	0	0
27.3.68	RNA.regulation of transcription.PWWP domain protein	1 (0.17%)	0	0	0	0	1	0	0	0
29.2.1.1.2.1.4	protein.synthesis.ribosomal protein.prokaryotic.mitochondrion.30S subunit.S4	1 (0.17%)	0	0	1	0	0	0	0	0
29.3.99	protein.targeting.unknown	1 (0.17%)	0	0	0	0	0	1	0	0
29.5.1	protein.degradation.subtilases	1 (0.17%)	0	0	0	0	0	1	0	0
29.5.11.4.3.1	protein.degradation.ubiquitin.E3.SCF.SKP	1 (0.17%)	0	0	0	0	0	0	0	1
29.5.11.5	protein.degradation.ubiquitin.ubiquitin protease	1 (0.17%)	0	0	0	0	0	0	1	0
29.5.2	protein.degradation.autophagy	1 (0.17%)	0	0	0	0	1	0	0	0
29.5.9	protein.degradation.AAA type	1 (0.17%)	0	0	0	1	0	0	0	0
3.6	minor CHO metabolism.callose	1 (0.17%)	0	1	0	0	0	0	0	0
30.2.25	signalling.receptor kinases.wall associated kinase	1 (0.17%)	0	0	0	0	1	0	0	0
9.1	mitochondrial electron transport / ATP synthesis.NADH-DH	1 (0.17%)	0	0	0	0	0	0	1	0
29.6	protein.folding	1 (0.17%)	0	0	0	0	0	0	0	1
31.3	cell.cycle	1 (0.17%)	0	0	0	0	1	0	0	0
34.13	transport.peptides and oligopeptides	1 (0.17%)	0	0	0	0	0	0	0	1
34.15	transport.potassium	1 (0.17%)	0	0	0	0	0	1	0	0
34.16	transport.ABC transporters and multidrug resistance systems	1 (0.17%)	0	0	0	0	0	0	0	1
34.7	transport.phosphate	1 (0.17%)	0	1	0	0	0	0	0	0
9.1.2	mitochondrial electron transport / ATP synthesis.NADH-DH.localisation not clear	1 (0.17%)	0	0	0	0	0	0	1	0