PLAZA 3.0 Dicots : Binding Sites

MapMan terms associated with a binding site

Binding site: Matrix_383
Name: CCA1
Description: N/A

#Associated genes: 267
#Associated MapMan terms: 125

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MapMan	Description	#Associated genes	ath	bra	egr	ptr	ppe	sly	vvi
27	RNA	56 (20.97%)	12	22	4	3	6	0	9
27.3	RNA.regulation of transcription	41 (15.36%)	8	18	4	2	3	0	6
30	signalling	18 (6.74%)	2	3	2	0	2	1	8
20	stress	17 (6.37%)	6	2	4	0	3	0	2
20.2	stress.abiotic	13 (4.87%)	4	2	3	0	3	0	1
20.2.1	stress.abiotic.heat	12 (4.49%)	3	2	3	0	3	0	1
26	misc	11 (4.12%)	1	3	0	3	1	0	3
33	development	11 (4.12%)	2	2	0	4	1	1	1
27.3.66	RNA.regulation of transcription.Psudo ARR transcription factor family	10 (3.75%)	1	5	1	1	0	0	2
29.5.11.4.2	protein.degradation.ubiquitin.E3.RING	10 (3.75%)	2	2	2	0	2	0	2
34	transport	10 (3.75%)	2	2	1	1	4	0	0
27.4	RNA.RNA binding	9 (3.37%)	2	2	0	1	2	0	2
29	protein	9 (3.37%)	1	3	0	2	1	0	2
31	cell	9 (3.37%)	1	2	1	3	0	1	1
30.3	signalling.calcium	8 (3.00%)	0	1	1	0	2	0	4
33.99	development.unspecified	8 (3.00%)	1	2	0	2	1	1	1
2	major CHO metabolism	7 (2.62%)	1	2	0	1	1	1	1
11	lipid metabolism	7 (2.62%)	1	1	2	0	3	0	0
27.3.7	RNA.regulation of transcription.C2C2(Zn) CO-like, Constans-like zinc finger family	7 (2.62%)	1	3	1	0	2	0	0
30.11	signalling.light	7 (2.62%)	1	2	0	0	0	0	4
27.1	RNA.processing	6 (2.25%)	2	2	0	0	1	0	1
3	minor CHO metabolism	5 (1.87%)	1	1	2	0	1	0	0
11.8	lipid metabolism.exotics(steroids, squalene etc)	5 (1.87%)	1	1	1	0	2	0	0
11.8.1	lipid metabolism.exotics (steroids, squalene etc).sphingolipids	5 (1.87%)	1	1	1	0	2	0	0
15	metal handling	5 (1.87%)	0	3	1	0	0	0	1
15.2	metal handling.binding, chelation and storage	5 (1.87%)	0	3	1	0	0	0	1
27.3.3	RNA.regulation of transcription.AP2/EREBP, APETALA2/Ethylene-responsive element binding protein family	5 (1.87%)	1	2	1	1	0	0	0
29.5.11.4.3.2	protein.degradation.ubiquitin.E3.SCF.FBOX	5 (1.87%)	1	1	1	0	1	0	1
2.2	major CHO metabolism.degradation	4 (1.50%)	1	2	0	0	0	0	1
3.1	minor CHO metabolism.raffinose family	4 (1.50%)	1	1	1	0	1	0	0
20.1	stress.biotic	4 (1.50%)	2	0	1	0	0	0	1
27.1.2	RNA.processing.RNA helicase	4 (1.50%)	0	2	0	0	1	0	1
29.5	protein.degradation	4 (1.50%)	1	1	0	1	0	0	1
3.1.2	minor CHO metabolism.raffinose family.raffinose synthases	4 (1.50%)	1	1	1	0	1	0	0
3.1.2.2	minor CHO metabolism.raffinose family.raffinose synthases.putative	4 (1.50%)	1	1	1	0	1	0	0
31.2	cell.division	4 (1.50%)	0	2	0	1	0	0	1
2.1	major CHO metabolism.synthesis	3 (1.12%)	0	0	0	1	1	1	0
2.1.2	major CHO metabolism.synthesis.starch	3 (1.12%)	0	0	0	1	1	1	0
2.1.2.2	major CHO metabolism.synthesis.starch.starch synthase	3 (1.12%)	0	0	0	1	1	1	0
2.2.2	major CHO metabolism.degradation.starch	3 (1.12%)	1	1	0	0	0	0	1
2.2.2.4	major CHO metabolism.degradation.starch.D enzyme	3 (1.12%)	1	1	0	0	0	0	1
16	secondary metabolism	3 (1.12%)	0	0	1	0	1	0	1
27.3.11	RNA.regulation of transcription.C2H2 zinc finger family	3 (1.12%)	0	2	0	0	1	0	0
27.3.5	RNA.regulation of transcription.ARR	3 (1.12%)	1	1	0	0	0	0	1
27.3.57	RNA.regulation of transcription.JUMONJI family	3 (1.12%)	1	1	0	0	0	0	1
27.3.99	RNA.regulation of transcription.unclassified	3 (1.12%)	0	2	0	0	0	0	1
29.4	protein.postranslational modification	3 (1.12%)	0	1	0	0	1	0	1
31.1	cell.organisation	3 (1.12%)	0	0	1	1	0	1	0
33.30	development.multitarget	3 (1.12%)	1	0	0	2	0	0	0
33.30.1	development.multitarget.target of rapamycin	3 (1.12%)	1	0	0	2	0	0	0
34.3	transport.amino acids	3 (1.12%)	1	0	1	0	1	0	0
34.99	transport.misc	3 (1.12%)	0	0	0	1	2	0	0
1	PS	2 (0.75%)	0	1	0	0	0	0	1
1.1	PS.lightreaction	2 (0.75%)	0	1	0	0	0	0	1
11.9	lipid metabolism.lipid degradation	2 (0.75%)	0	0	1	0	1	0	0
11.9.3	lipid metabolism.lipid degradation.lysophospholipases	2 (0.75%)	0	0	1	0	1	0	0
11.9.3.2	lipid metabolism.lipid degradation.lysophospholipases.carboxylesterase	2 (0.75%)	0	0	1	0	1	0	0
16.5	secondary metabolism.sulfur-containing	2 (0.75%)	0	0	0	0	1	0	1
16.5.99	secondary metabolism.sulfur-containing.misc	2 (0.75%)	0	0	0	0	1	0	1
16.5.99.1	secondary metabolism.sulfur-containing.misc.alliinase	2 (0.75%)	0	0	0	0	1	0	1
26.10	misc.cytochrome P450	2 (0.75%)	0	0	0	1	1	0	0
26.22	misc.short chain dehydrogenase/reductase (SDR)	2 (0.75%)	1	0	0	0	0	0	1
26.3	misc.gluco-, galacto- and mannosidases	2 (0.75%)	0	1	0	1	0	0	0
29.5.1	protein.degradation.subtilases	2 (0.75%)	1	1	0	0	0	0	0
29.5.11.4.4	protein.degradation.ubiquitin.E3.APC	2 (0.75%)	0	0	0	1	0	0	1
3.1.2.1	minor CHO metabolism.raffinose family.raffinose synthases.known	2 (0.75%)	0	0	1	0	1	0	0
17	hormone metabolism	2 (0.75%)	1	0	0	0	0	1	0
34.13	transport.peptides and oligopeptides	2 (0.75%)	0	1	0	0	1	0	0
1.1.1	PS.lightreaction.photosystem II	1 (0.37%)	0	1	0	0	0	0	0
1.1.1.1	PS.lightreaction.photosystem II.LHC-II	1 (0.37%)	0	1	0	0	0	0	0
1.1.4	PS.lightreaction.ATP synthase	1 (0.37%)	0	0	0	0	0	0	1
16.1.5	secondary metabolism.isoprenoids.terpenoids	1 (0.37%)	0	0	1	0	0	0	0
17.1.2	hormone metabolism.abscisic acid.signal transduction	1 (0.37%)	1	0	0	0	0	0	0
17.8.1	hormone metabolism.salicylic acid.synthesis-degradation	1 (0.37%)	0	0	0	0	0	1	0
2.2.1	major CHO metabolism.degradation.sucrose	1 (0.37%)	0	1	0	0	0	0	0
2.2.1.3	major CHO metabolism.degradation.sucrose.invertases	1 (0.37%)	0	1	0	0	0	0	0
2.2.1.3.1	major CHO metabolism.degradation.sucrose.invertases.neutral	1 (0.37%)	0	1	0	0	0	0	0
20.2.5	stress.abiotic.light	1 (0.37%)	1	0	0	0	0	0	0
3.5	minor CHO metabolism.others	1 (0.37%)	0	0	1	0	0	0	0
16.1	secondary metabolism.isoprenoids	1 (0.37%)	0	0	1	0	0	0	0
17.1	hormone metabolism.abscisic acid	1 (0.37%)	1	0	0	0	0	0	0
17.8	hormone metabolism.salicylic acid	1 (0.37%)	0	0	0	0	0	1	0
18	Co-factor and vitamine metabolism	1 (0.37%)	0	0	1	0	0	0	0
18.2	Co-factor and vitamine metabolism.thiamine	1 (0.37%)	0	0	1	0	0	0	0
21	redox	1 (0.37%)	0	0	1	0	0	0	0
21.2	redox.ascorbate and glutathione	1 (0.37%)	0	0	1	0	0	0	0
21.2.1	redox.ascorbate and glutathione.ascorbate	1 (0.37%)	0	0	1	0	0	0	0
23	nucleotide metabolism	1 (0.37%)	0	1	0	0	0	0	0
23.1	nucleotide metabolism.synthesis	1 (0.37%)	0	1	0	0	0	0	0
23.1.2	nucleotide metabolism.synthesis.purine	1 (0.37%)	0	1	0	0	0	0	0
23.1.2.30	nucleotide metabolism.synthesis.purine.IMP dehydrogenase	1 (0.37%)	0	1	0	0	0	0	0
26.1	misc.misc2	1 (0.37%)	0	0	0	1	0	0	0
26.13	misc.acid and other phosphatases	1 (0.37%)	0	0	0	0	0	0	1
26.16	misc.myrosinases-lectin-jacalin	1 (0.37%)	0	0	0	0	0	0	1
26.21	misc.protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	1 (0.37%)	0	1	0	0	0	0	0
26.24	misc.GCN5-related N-acetyltransferase	1 (0.37%)	0	1	0	0	0	0	0
27.1.1	RNA.processing.splicing	1 (0.37%)	1	0	0	0	0	0	0
27.3.22	RNA.regulation of transcription.HB,Homeobox transcription factor family	1 (0.37%)	0	1	0	0	0	0	0
27.3.26	RNA.regulation of transcription.MYB-related transcription factor family	1 (0.37%)	0	1	0	0	0	0	0
27.3.27	RNA.regulation of transcription.NAC domain transcription factor family	1 (0.37%)	1	0	0	0	0	0	0
27.3.34	RNA.regulation of transcription.Orphan family	1 (0.37%)	0	0	0	0	0	0	1
27.3.39	RNA.regulation of transcription.AtSR Transcription Factor family	1 (0.37%)	1	0	0	0	0	0	0
27.3.6	RNA.regulation of transcription.bHLH,Basic Helix-Loop-Helix family	1 (0.37%)	0	1	0	0	0	0	0
27.3.65	RNA.regulation of transcription.Polycomb Group (PcG)	1 (0.37%)	0	1	0	0	0	0	0
27.3.75	RNA.regulation of transcription.GRP	1 (0.37%)	1	0	0	0	0	0	0
28	DNA	1 (0.37%)	1	0	0	0	0	0	0
28.1	DNA.synthesis/chromatin structure	1 (0.37%)	1	0	0	0	0	0	0
29.2	protein.synthesis	1 (0.37%)	0	1	0	0	0	0	0
29.2.1.1.1.2.1	protein.synthesis.ribosomal protein.prokaryotic.chloroplast.50S subunit.L1	1 (0.37%)	0	0	0	0	0	0	1
29.2.3	protein.synthesis.initiation	1 (0.37%)	0	1	0	0	0	0	0
29.3	protein.targeting	1 (0.37%)	0	0	0	1	0	0	0
29.3.4	protein.targeting.secretory pathway	1 (0.37%)	0	0	0	1	0	0	0
29.3.4.99	protein.targeting.secretory pathway.unspecified	1 (0.37%)	0	0	0	1	0	0	0
29.5.11	protein.degradation.ubiquitin	1 (0.37%)	0	0	0	1	0	0	0
29.5.11.20	protein.degradation.ubiquitin.proteasom	1 (0.37%)	0	0	0	1	0	0	0
29.5.3	protein.degradation.cysteine protease	1 (0.37%)	0	0	0	0	0	0	1
30.10	signalling.phosphorelay	1 (0.37%)	1	0	0	0	0	0	0
30.2	signalling.receptor kinases	1 (0.37%)	0	0	0	0	0	1	0
30.2.17	signalling.receptor kinases.DUF 26	1 (0.37%)	0	0	0	0	0	1	0
30.5	signalling.G-proteins	1 (0.37%)	0	0	1	0	0	0	0
31.3	cell.cycle	1 (0.37%)	0	0	0	1	0	0	0
31.3.1	cell.cycle.peptidylprolyl isomerase	1 (0.37%)	0	0	0	1	0	0	0
31.4	cell.vesicle transport	1 (0.37%)	1	0	0	0	0	0	0
34.12	transport.metal	1 (0.37%)	0	1	0	0	0	0	0
34.15	transport.potassium	1 (0.37%)	1	0	0	0	0	0	0