PLAZA 3.0 Dicots : Binding Sites

MapMan terms associated with a binding site

Binding site: Matrix_310
Name: AGL3
Description: The Arabidopsis MADS-box gene AGL3 is widely expressed and encodes a sequence-specific DNA-binding protein

#Associated genes: 538
#Associated MapMan terms: 159

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MapMan	Description	#Associated genes	ath	bra	egr	gma	ptr	ppe	sly	vvi
27	RNA	132 (24.54%)	12	17	9	26	24	18	13	13
27.3	RNA.regulation of transcription	114 (21.19%)	11	14	9	22	21	14	12	11
29	protein	30 (5.58%)	2	4	3	8	6	1	2	4
27.3.24	RNA.regulation of transcription.MADS box transcription factor family	26 (4.83%)	2	1	5	5	4	4	2	3
31	cell	24 (4.46%)	1	2	1	8	5	2	2	3
33	development	22 (4.09%)	3	2	0	9	2	0	3	3
33.99	development.unspecified	21 (3.90%)	3	2	0	8	2	0	3	3
34	transport	21 (3.90%)	2	3	2	3	2	3	3	3
29.4	protein.postranslational modification	17 (3.16%)	2	1	1	6	4	0	1	2
30	signalling	17 (3.16%)	4	0	1	2	4	2	2	2
27.3.11	RNA.regulation of transcription.C2H2 zinc finger family	16 (2.97%)	3	4	0	3	2	2	1	1
31.1	cell.organisation	16 (2.97%)	0	1	1	6	3	2	2	1
17	hormone metabolism	14 (2.60%)	1	2	1	5	0	2	2	1
27.1	RNA.processing	14 (2.60%)	1	3	0	2	2	3	1	2
27.3.99	RNA.regulation of transcription.unclassified	14 (2.60%)	2	3	1	3	2	1	2	0
28	DNA	11 (2.04%)	2	1	1	4	0	2	1	0
29.4.1	protein.postranslational modification.kinase	10 (1.86%)	1	1	0	4	3	0	0	1
10	cell wall	9 (1.67%)	0	1	2	3	0	0	1	2
27.3.35	RNA.regulation of transcription.bZIP transcription factor family	9 (1.67%)	1	0	1	4	0	1	1	1
30.5	signalling.G-proteins	9 (1.67%)	3	0	1	2	2	0	0	1
20	stress	8 (1.49%)	0	2	1	3	0	1	1	0
29.2	protein.synthesis	8 (1.49%)	0	1	1	2	1	1	1	1
29.5.11.4.2	protein.degradation.ubiquitin.E3.RING	8 (1.49%)	0	0	0	4	2	1	1	0
11	lipid metabolism	7 (1.30%)	1	1	0	1	1	1	1	1
26	misc	7 (1.30%)	2	1	0	1	0	1	0	2
34.99	transport.misc	7 (1.30%)	1	0	1	1	1	1	1	1
27.3.54	RNA.regulation of transcription.Histone acetyltransferases	6 (1.12%)	1	0	1	1	1	1	0	1
28.1	DNA.synthesis/chromatin structure	6 (1.12%)	1	1	0	3	0	1	0	0
3	minor CHO metabolism	5 (0.93%)	1	0	0	3	0	1	0	0
10.7	cell wall.modification	5 (0.93%)	0	0	1	3	0	0	0	1
17.1	hormone metabolism.abscisic acid	5 (0.93%)	0	1	0	3	0	1	0	0
27.3.3	RNA.regulation of transcription.AP2/EREBP, APETALA2/Ethylene-responsive element binding protein family	5 (0.93%)	0	0	0	0	2	1	1	1
28.2	DNA.repair	5 (0.93%)	1	0	1	1	0	1	1	0
29.4.1.57	protein.postranslational modification.kinase.receptor like cytoplasmatic kinase VII	5 (0.93%)	0	0	0	3	2	0	0	0
16	secondary metabolism	4 (0.74%)	0	0	1	0	2	1	0	0
17.1.2	hormone metabolism.abscisic acid.signal transduction	4 (0.74%)	0	1	0	2	0	1	0	0
20.1	stress.biotic	4 (0.74%)	0	0	1	3	0	0	0	0
20.2	stress.abiotic	4 (0.74%)	0	2	0	0	0	1	1	0
27.2	RNA.transcription	4 (0.74%)	0	0	0	2	1	1	0	0
27.3.25	RNA.regulation of transcription.MYB domain transcription factor family	4 (0.74%)	0	0	0	0	3	0	0	1
3.2	minor CHO metabolism.trehalose	4 (0.74%)	1	0	0	3	0	0	0	0
3.2.3	minor CHO metabolism.trehalose.potential TPS/TPP	4 (0.74%)	1	0	0	3	0	0	0	0
34.16	transport.ABC transporters and multidrug resistance systems	4 (0.74%)	0	0	0	0	1	1	1	1
10.6	cell wall.degradation	3 (0.56%)	0	0	1	0	0	0	1	1
11.5	lipid metabolism.glyceral metabolism	3 (0.56%)	1	0	0	0	0	1	0	1
11.5.2	lipid metabolism.glyceral metabolism.Glycerol-3-phosphate dehydrogenase (NAD+)	3 (0.56%)	1	0	0	0	0	1	0	1
16.2	secondary metabolism.phenylpropanoids	3 (0.56%)	0	0	0	0	2	1	0	0
17.6	hormone metabolism.gibberelin	3 (0.56%)	0	0	1	0	0	0	1	1
17.6.2	hormone metabolism.gibberelin.signal transduction	3 (0.56%)	0	0	1	0	0	0	1	1
20.2.1	stress.abiotic.heat	3 (0.56%)	0	1	0	0	0	1	1	0
21	redox	3 (0.56%)	0	2	1	0	0	0	0	0
21.4	redox.glutaredoxins	3 (0.56%)	0	2	1	0	0	0	0	0
23	nucleotide metabolism	3 (0.56%)	0	0	0	2	0	1	0	0
24	Biodegradation of Xenobiotics	3 (0.56%)	1	0	0	0	0	1	1	0
27.1.2	RNA.processing.RNA helicase	3 (0.56%)	0	1	0	0	0	1	0	1
27.3.1	RNA.regulation of transcription.ABI3/VP1-related B3-domain-containing transcription factor family	3 (0.56%)	1	2	0	0	0	0	0	0
27.3.22	RNA.regulation of transcription.HB,Homeobox transcription factor family	3 (0.56%)	0	0	0	0	0	1	2	0
27.3.44	RNA.regulation of transcription.Chromatin Remodeling Factors	3 (0.56%)	0	1	0	1	1	0	0	0
27.3.60	RNA.regulation of transcription.NIN-like bZIP-related family	3 (0.56%)	0	1	0	1	0	0	1	0
27.3.67	RNA.regulation of transcription.putative transcription regulator	3 (0.56%)	1	0	0	0	0	1	0	1
29.2.1.1.1.1.2	protein.synthesis.ribosomal protein.prokaryotic.chloroplast.30S subunit.S2	3 (0.56%)	0	0	0	0	0	0	3	0
29.5	protein.degradation	3 (0.56%)	0	1	1	0	1	0	0	0
30.2	signalling.receptor kinases	3 (0.56%)	0	0	0	0	0	2	0	1
31.2	cell.division	3 (0.56%)	1	0	0	1	0	0	0	1
31.3	cell.cycle	3 (0.56%)	0	1	0	0	1	0	0	1
34.7	transport.phosphate	3 (0.56%)	0	0	0	1	0	0	1	1
8	TCA / org transformation	2 (0.37%)	0	0	0	0	0	0	1	1
10.6.1	cell wall.degradation.cellulases and beta -1,4-glucanases	2 (0.37%)	0	0	0	0	0	0	1	1
11.8	lipid metabolism.exotics(steroids, squalene etc)	2 (0.37%)	0	0	0	1	0	0	1	0
11.8.1	lipid metabolism.exotics (steroids, squalene etc).sphingolipids	2 (0.37%)	0	0	0	1	0	0	1	0
11.9	lipid metabolism.lipid degradation	2 (0.37%)	0	1	0	0	1	0	0	0
11.9.3	lipid metabolism.lipid degradation.lysophospholipases	2 (0.37%)	0	1	0	0	1	0	0	0
13	amino acid metabolism	2 (0.37%)	0	2	0	0	0	0	0	0
17.2	hormone metabolism.auxin	2 (0.37%)	1	1	0	0	0	0	0	0
17.8	hormone metabolism.salicylic acid	2 (0.37%)	0	0	0	1	0	0	1	0
17.8.1	hormone metabolism.salicylic acid.synthesis-degradation	2 (0.37%)	0	0	0	1	0	0	1	0
23.2	nucleotide metabolism.degradation	2 (0.37%)	0	0	0	2	0	0	0	0
23.2.1	nucleotide metabolism.degradation.pyrimidine	2 (0.37%)	0	0	0	2	0	0	0	0
23.2.1.4	nucleotide metabolism.degradation.pyrimidine.dihydropyrimidinase	2 (0.37%)	0	0	0	2	0	0	0	0
26.10	misc.cytochrome P450	2 (0.37%)	1	1	0	0	0	0	0	0
27.3.26	RNA.regulation of transcription.MYB-related transcription factor family	2 (0.37%)	0	0	0	0	2	0	0	0
27.3.42	RNA.regulation of transcription.Bromodomain proteins	2 (0.37%)	0	0	0	0	2	0	0	0
27.3.6	RNA.regulation of transcription.bHLH,Basic Helix-Loop-Helix family	2 (0.37%)	0	0	0	2	0	0	0	0
29.3	protein.targeting	2 (0.37%)	0	1	0	0	0	0	0	1
29.5.11	protein.degradation.ubiquitin	2 (0.37%)	0	1	0	0	1	0	0	0
29.5.11.4.1	protein.degradation.ubiquitin.E3.HECT	2 (0.37%)	0	0	0	1	1	0	0	0
30.2.11	signalling.receptor kinases.leucine rich repeat XI	2 (0.37%)	0	0	0	0	0	1	0	1
8.3	TCA / org transformation.carbonic anhydrases	2 (0.37%)	0	0	0	0	0	0	1	1
30.3	signalling.calcium	2 (0.37%)	0	0	0	0	1	0	1	0
31.4	cell.vesicle transport	2 (0.37%)	0	0	0	1	1	0	0	0
34.10	transport.nucleotides	2 (0.37%)	0	2	0	0	0	0	0	0
34.11	transport.NDP-sugars at the ER	2 (0.37%)	0	0	1	0	0	1	0	0
34.19	transport.Major Intrinsic Proteins	2 (0.37%)	0	1	0	1	0	0	0	0
10.5	cell wall.cell wall proteins	1 (0.19%)	0	1	0	0	0	0	0	0
10.5.5	cell wall.cell wall proteins.RGP	1 (0.19%)	0	1	0	0	0	0	0	0
10.6.2	cell wall.degradation.mannan-xylose-arabinose-fucose	1 (0.19%)	0	0	1	0	0	0	0	0
11.9.3.1	lipid metabolism.lipid degradation.lysophospholipases.phospholipase D	1 (0.19%)	0	1	0	0	0	0	0	0
11.9.3.2	lipid metabolism.lipid degradation.lysophospholipases.carboxylesterase	1 (0.19%)	0	0	0	0	1	0	0	0
13.1	amino acid metabolism.synthesis	1 (0.19%)	0	1	0	0	0	0	0	0
13.1.6	amino acid metabolism.synthesis.aromatic aa	1 (0.19%)	0	1	0	0	0	0	0	0
13.1.6.5	amino acid metabolism.synthesis.aromatic aa.tryptophan	1 (0.19%)	0	1	0	0	0	0	0	0
13.1.6.5.1	amino acid metabolism.synthesis.aromatic aa.tryptophan.anthranilate synthase	1 (0.19%)	0	1	0	0	0	0	0	0
13.2	amino acid metabolism.degradation	1 (0.19%)	0	1	0	0	0	0	0	0
13.2.3	amino acid metabolism.degradation.aspartate family	1 (0.19%)	0	1	0	0	0	0	0	0
13.2.3.4	amino acid metabolism.degradation.aspartate family.methionine	1 (0.19%)	0	1	0	0	0	0	0	0
13.2.3.4.1	amino acid metabolism.degradation.aspartate family.methionine.methionine gamma-lyase	1 (0.19%)	0	1	0	0	0	0	0	0
15	metal handling	1 (0.19%)	0	0	0	0	0	1	0	0
15.2	metal handling.binding, chelation and storage	1 (0.19%)	0	0	0	0	0	1	0	0
16.10	secondary metabolism.simple phenols	1 (0.19%)	0	0	1	0	0	0	0	0
16.2.1	secondary metabolism.phenylpropanoids.lignin biosynthesis	1 (0.19%)	0	0	0	0	1	0	0	0
16.2.1.10	secondary metabolism.phenylpropanoids.lignin biosynthesis.CAD	1 (0.19%)	0	0	0	0	1	0	0	0
17.1.1	hormone metabolism.abscisic acid.synthesis-degradation	1 (0.19%)	0	0	0	1	0	0	0	0
17.1.1.1	hormone metabolism.abscisic acid.synthesis-degradation.synthesis	1 (0.19%)	0	0	0	1	0	0	0	0
17.1.1.1.1	hormone metabolism.abscisic acid.synthesis-degradation.synthesis.zeaxanthin epoxidase	1 (0.19%)	0	0	0	1	0	0	0	0
17.1.1.1.10	hormone metabolism.abscisic acid.synthesis-degradation.synthesis.9-cis-epoxycarotenoid dioxygenase	1 (0.19%)	0	0	0	0	0	0	0	1
17.2.2	hormone metabolism.auxin.signal transduction	1 (0.19%)	0	1	0	0	0	0	0	0
17.2.3	hormone metabolism.auxin.induced-regulated-responsive-activated	1 (0.19%)	1	0	0	0	0	0	0	0
17.4	hormone metabolism.cytokinin	1 (0.19%)	0	0	0	0	0	1	0	0
17.4.2	hormone metabolism.cytokinin.signal transduction	1 (0.19%)	0	0	0	0	0	1	0	0
17.5	hormone metabolism.ethylene	1 (0.19%)	0	0	0	1	0	0	0	0
17.5.1	hormone metabolism.ethylene.synthesis-degradation	1 (0.19%)	0	0	0	1	0	0	0	0
20.2.3	stress.abiotic.drought/salt	1 (0.19%)	0	1	0	0	0	0	0	0
23.4	nucleotide metabolism.phosphotransfer and pyrophosphatases	1 (0.19%)	0	0	0	0	0	1	0	0
23.4.99	nucleotide metabolism.phosphotransfer and pyrophosphatases.misc	1 (0.19%)	0	0	0	0	0	1	0	0
26.12	misc.peroxidases	1 (0.19%)	1	0	0	0	0	0	0	0
26.17	misc.dynamin	1 (0.19%)	0	0	0	0	0	1	0	0
26.2	misc.UDP glucosyl and glucoronyl transferases	1 (0.19%)	0	0	0	0	0	0	0	1
26.22	misc.short chain dehydrogenase/reductase (SDR)	1 (0.19%)	0	0	0	1	0	0	0	0
26.3	misc.gluco-, galacto- and mannosidases	1 (0.19%)	0	0	0	0	0	0	0	1
26.3.4	misc.gluco-, galacto- and mannosidases.endoglucanase	1 (0.19%)	0	0	0	0	0	0	0	1
27.1.1	RNA.processing.splicing	1 (0.19%)	0	0	0	0	1	0	0	0
27.3.12	RNA.regulation of transcription.C3H zinc finger family	1 (0.19%)	0	0	1	0	0	0	0	0
27.3.14	RNA.regulation of transcription.CCAAT box binding factor family, HAP2	1 (0.19%)	0	1	0	0	0	0	0	0
27.3.15	RNA.regulation of transcription.CCAAT box binding factor family, HAP3	1 (0.19%)	0	0	0	0	0	0	1	0
27.3.20	RNA.regulation of transcription.G2-like transcription factor family, GARP	1 (0.19%)	0	0	0	0	1	0	0	0
27.3.32	RNA.regulation of transcription.WRKY domain transcription factor family	1 (0.19%)	0	1	0	0	0	0	0	0
27.3.40	RNA.regulation of transcription.Aux/IAA family	1 (0.19%)	0	0	0	1	0	0	0	0
27.3.59	RNA.regulation of transcription.Methyl binding domain proteins	1 (0.19%)	0	0	0	0	0	1	0	0
27.3.68	RNA.regulation of transcription.PWWP domain protein	1 (0.19%)	0	0	0	0	0	0	0	1
27.3.7	RNA.regulation of transcription.C2C2(Zn) CO-like, Constans-like zinc finger family	1 (0.19%)	0	0	0	0	0	0	1	0
27.3.8	RNA.regulation of transcription.C2C2(Zn) DOF zinc finger family	1 (0.19%)	0	0	0	1	0	0	0	0
29.2.4	protein.synthesis.elongation	1 (0.19%)	0	1	0	0	0	0	0	0
29.3.1	protein.targeting.nucleus	1 (0.19%)	0	1	0	0	0	0	0	0
29.3.4	protein.targeting.secretory pathway	1 (0.19%)	0	0	0	0	0	0	0	1
29.3.4.99	protein.targeting.secretory pathway.unspecified	1 (0.19%)	0	0	0	0	0	0	0	1
29.5.11.3	protein.degradation.ubiquitin.E2	1 (0.19%)	0	0	0	0	1	0	0	0
29.5.11.4.3.2	protein.degradation.ubiquitin.E3.SCF.FBOX	1 (0.19%)	0	0	0	0	1	0	0	0
29.5.11.4.5.1	protein.degradation.ubiquitin.E3.BTB/POZ Cullin3.Cullin3	1 (0.19%)	0	0	0	0	0	0	0	1
29.5.5	protein.degradation.serine protease	1 (0.19%)	0	0	1	0	0	0	0	0
3.2.1	minor CHO metabolism.trehalose.TPS	1 (0.19%)	0	0	0	1	0	0	0	0
3.6	minor CHO metabolism.callose	1 (0.19%)	0	0	0	0	0	1	0	0
30.11	signalling.light	1 (0.19%)	0	0	0	0	1	0	0	0
30.2.17	signalling.receptor kinases.DUF 26	1 (0.19%)	0	0	0	0	0	1	0	0
30.6	signalling.MAP kinases	1 (0.19%)	1	0	0	0	0	0	0	0
30.99	signalling.unspecified	1 (0.19%)	0	0	0	0	0	0	1	0
33.3	development.squamosa promoter binding like (SPL)	1 (0.19%)	0	0	0	1	0	0	0	0
34.12	transport.metal	1 (0.19%)	1	0	0	0	0	0	0	0
34.19.2	transport.Major Intrinsic Proteins.TIP	1 (0.19%)	0	0	0	1	0	0	0	0
34.19.3	transport.Major Intrinsic Proteins.NIP	1 (0.19%)	0	1	0	0	0	0	0	0