PLAZA 3.0 Dicots : Binding Sites

MapMan terms associated with a binding site

Binding site: Matrix_299
Name: PFG3
Description: N/A

#Associated genes: 536
#Associated MapMan terms: 197

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MapMan	Description	#Associated genes	ath	bra	egr	gma	ptr	ppe	sly	vvi
27	RNA	95 (17.72%)	6	6	0	32	24	8	10	9
27.3	RNA.regulation of transcription	79 (14.74%)	5	5	0	28	19	5	10	7
16	secondary metabolism	63 (11.75%)	8	7	2	28	6	3	7	2
16.2	secondary metabolism.phenylpropanoids	32 (5.97%)	5	4	1	9	4	1	7	1
13	amino acid metabolism	29 (5.41%)	2	2	2	6	11	1	4	1
16.2.1	secondary metabolism.phenylpropanoids.lignin biosynthesis	28 (5.22%)	5	3	0	9	4	0	6	1
34	transport	28 (5.22%)	5	3	2	9	6	1	0	2
16.8	secondary metabolism.flavonoids	27 (5.04%)	2	3	0	18	2	1	0	1
26	misc	27 (5.04%)	2	6	0	6	3	4	4	2
16.8.2	secondary metabolism.flavonoids.chalcones	25 (4.66%)	2	3	0	16	2	1	0	1
13.1	amino acid metabolism.synthesis	22 (4.10%)	2	1	1	4	10	1	3	0
27.3.25	RNA.regulation of transcription.MYB domain transcription factor family	21 (3.92%)	3	0	0	7	5	1	2	3
29	protein	20 (3.73%)	1	2	0	3	8	0	2	4
13.1.6	amino acid metabolism.synthesis.aromatic aa	17 (3.17%)	2	0	0	4	8	0	3	0
26.10	misc.cytochrome P450	14 (2.61%)	0	4	0	2	2	3	2	1
33	development	14 (2.61%)	4	0	1	1	5	1	1	1
13.1.6.1	amino acid metabolism.synthesis.aromatic aa.chorismate	13 (2.43%)	1	0	0	3	7	0	2	0
27.4	RNA.RNA binding	13 (2.43%)	1	1	0	3	3	3	0	2
16.2.1.1	secondary metabolism.phenylpropanoids.lignin biosynthesis.PAL	12 (2.24%)	2	2	0	2	3	0	3	0
27.3.99	RNA.regulation of transcription.unclassified	12 (2.24%)	0	0	0	6	4	2	0	0
31	cell	12 (2.24%)	1	1	0	4	1	3	2	0
16.2.1.3	secondary metabolism.phenylpropanoids.lignin biosynthesis.4CL	11 (2.05%)	1	1	0	5	1	0	3	0
29.4	protein.postranslational modification	10 (1.87%)	0	1	0	1	4	0	1	3
31.1	cell.organisation	10 (1.87%)	1	1	0	3	1	3	1	0
34.99	transport.misc	9 (1.68%)	0	1	1	4	2	0	0	1
21	redox	8 (1.49%)	0	1	2	2	1	0	2	0
27.3.22	RNA.regulation of transcription.HB,Homeobox transcription factor family	8 (1.49%)	2	2	0	2	2	0	0	0
33.99	development.unspecified	8 (1.49%)	3	0	0	0	4	0	0	1
11	lipid metabolism	7 (1.31%)	1	0	1	1	3	0	1	0
13.2	amino acid metabolism.degradation	7 (1.31%)	0	1	1	2	1	0	1	1
20	stress	7 (1.31%)	1	0	0	2	4	0	0	0
30	signalling	7 (1.31%)	0	2	0	0	4	0	0	1
8	TCA / org transformation	6 (1.12%)	0	0	0	1	0	2	2	1
9	mitochondrial electron transport / ATP synthesis	6 (1.12%)	0	0	0	0	0	0	5	1
13.1.6.1.6	amino acid metabolism.synthesis.aromatic aa.chorismate.5-enolpyruvylshikimate-3-phosphate synthase	6 (1.12%)	1	0	0	2	2	0	1	0
13.2.6	amino acid metabolism.degradation.aromatic aa	6 (1.12%)	0	1	1	2	1	0	0	1
21.2	redox.ascorbate and glutathione	6 (1.12%)	0	1	2	1	0	0	2	0
26.2	misc.UDP glucosyl and glucoronyl transferases	6 (1.12%)	2	1	0	2	1	0	0	0
29.3	protein.targeting	6 (1.12%)	1	1	0	2	2	0	0	0
29.5.11.4.1	protein.degradation.ubiquitin.E3.HECT	6 (1.12%)	1	1	0	0	2	1	1	0
30.2	signalling.receptor kinases	6 (1.12%)	0	2	0	0	3	0	0	1
1	PS	5 (0.93%)	0	1	0	4	0	0	0	0
12	N-metabolism	5 (0.93%)	2	0	0	0	3	0	0	0
23	nucleotide metabolism	5 (0.93%)	0	1	0	0	2	1	1	0
23.4	nucleotide metabolism.phosphotransfer and pyrophosphatases	5 (0.93%)	0	1	0	0	2	1	1	0
27.3.6	RNA.regulation of transcription.bHLH,Basic Helix-Loop-Helix family	5 (0.93%)	0	2	0	0	0	2	1	0
29.3.1	protein.targeting.nucleus	5 (0.93%)	1	1	0	2	1	0	0	0
29.4.1	protein.postranslational modification.kinase	5 (0.93%)	0	1	0	0	3	0	0	1
33.30	development.multitarget	5 (0.93%)	0	0	1	1	1	1	1	0
33.30.1	development.multitarget.target of rapamycin	5 (0.93%)	0	0	1	1	1	1	1	0
9.7	mitochondrial electron transport / ATP synthesis.cytochrome c oxidase	5 (0.93%)	0	0	0	0	0	0	4	1
12.2.2	N-metabolism.ammonia metabolism.glutamine synthetase	4 (0.75%)	2	0	0	0	2	0	0	0
13.1.6.3	amino acid metabolism.synthesis.aromatic aa.phenylalanine	4 (0.75%)	1	0	0	1	1	0	1	0
13.1.6.3.1	amino acid metabolism.synthesis.aromatic aa.phenylalanine.arogenate dehydratase / prephenate dehydratase	4 (0.75%)	1	0	0	1	1	0	1	0
13.2.6.2	amino acid metabolism.degradation.aromatic aa.tyrosine	4 (0.75%)	0	0	1	2	0	0	0	1
27.3.30	RNA.regulation of transcription.Trihelix, Triple-Helix transcription factor family	4 (0.75%)	0	0	0	2	2	0	0	0
29.4.1.57	protein.postranslational modification.kinase.receptor like cytoplasmatic kinase VII	4 (0.75%)	0	1	0	0	2	0	0	1
29.5.11.4.2	protein.degradation.ubiquitin.E3.RING	4 (0.75%)	0	1	0	2	0	1	0	0
30.2.11	signalling.receptor kinases.leucine rich repeat XI	4 (0.75%)	0	1	0	0	2	0	0	1
8.1	TCA / org transformation.TCA	4 (0.75%)	0	0	0	1	0	1	1	1
11.9	lipid metabolism.lipid degradation	4 (0.75%)	1	0	0	0	2	0	1	0
12.2	N-metabolism.ammonia metabolism	4 (0.75%)	2	0	0	0	2	0	0	0
20.1	stress.biotic	4 (0.75%)	1	0	0	1	2	0	0	0
8.1.1	TCA / org transformation.TCA.pyruvate DH	4 (0.75%)	0	0	0	1	0	1	1	1
8.1.1.1	TCA / org transformation.TCA.pyruvate DH.E1	4 (0.75%)	0	0	0	1	0	1	1	1
10	cell wall	4 (0.75%)	0	0	0	0	2	0	2	0
17	hormone metabolism	4 (0.75%)	1	1	1	0	1	0	0	0
1.3	PS.calvin cycle	3 (0.56%)	0	0	0	3	0	0	0	0
7	OPP	3 (0.56%)	0	0	0	1	0	0	1	1
10.6	cell wall.degradation	3 (0.56%)	0	0	0	0	2	0	1	0
11.1	lipid metabolism.FA synthesis and FA elongation	3 (0.56%)	0	0	1	1	1	0	0	0
11.1.8	lipid metabolism.FA synthesis and FA elongation.acyl coa ligase	3 (0.56%)	0	0	1	1	1	0	0	0
11.9.2	lipid metabolism.lipid degradation.lipases	3 (0.56%)	0	0	0	0	2	0	1	0
11.9.2.1	lipid metabolism.lipid degradation.lipases.triacylglycerol lipase	3 (0.56%)	0	0	0	0	2	0	1	0
13.1.3	amino acid metabolism.synthesis.aspartate family	3 (0.56%)	0	1	1	0	0	1	0	0
13.1.3.4	amino acid metabolism.synthesis.aspartate family.methionine	3 (0.56%)	0	1	1	0	0	1	0	0
13.1.6.1.10	amino acid metabolism.synthesis.aromatic aa.chorismate.dehydroquinate/shikimate dehydrogenase	3 (0.56%)	0	0	0	0	1	0	1	1
13.1.6.1.7	amino acid metabolism.synthesis.aromatic aa.chorismate.chorismate synthase	3 (0.56%)	0	0	0	0	2	0	1	0
16.4	secondary metabolism.N misc	3 (0.56%)	1	0	0	1	0	1	0	0
16.4.1	secondary metabolism.N misc.alkaloid-like	3 (0.56%)	1	0	0	1	0	1	0	0
20.2	stress.abiotic	3 (0.56%)	0	0	0	1	2	0	0	0
23.4.1	nucleotide metabolism.phosphotransfer and pyrophosphatases.adenylate kinase	3 (0.56%)	0	0	0	0	1	1	1	0
26.11	misc.alcohol dehydrogenases	3 (0.56%)	0	0	0	2	0	0	1	0
27.3.11	RNA.regulation of transcription.C2H2 zinc finger family	3 (0.56%)	0	0	0	2	0	0	0	1
27.3.35	RNA.regulation of transcription.bZIP transcription factor family	3 (0.56%)	0	0	0	1	1	0	1	0
27.3.8	RNA.regulation of transcription.C2C2(Zn) DOF zinc finger family	3 (0.56%)	0	0	0	1	0	0	1	1
28	DNA	3 (0.56%)	0	0	0	0	3	0	0	0
28.1	DNA.synthesis/chromatin structure	3 (0.56%)	0	0	0	0	3	0	0	0
29.1	protein.aa activation	3 (0.56%)	0	0	0	0	1	0	1	1
29.1.20	protein.aa activation.phenylalanine-tRNA ligase	3 (0.56%)	0	0	0	0	1	0	1	1
34.13	transport.peptides and oligopeptides	3 (0.56%)	1	0	0	1	0	0	0	1
34.16	transport.ABC transporters and multidrug resistance systems	3 (0.56%)	1	1	0	0	1	0	0	0
34.8	transport.metabolite transporters at the envelope membrane	3 (0.56%)	1	0	1	1	0	0	0	0
34.9	transport.metabolite transporters at the mitochondrial membrane	3 (0.56%)	1	0	0	1	1	0	0	0
1.2	PS.photorespiration	2 (0.37%)	0	1	0	1	0	0	0	0
1.2.5	PS.photorespiration.serine hydroxymethyltransferase	2 (0.37%)	0	1	0	1	0	0	0	0
1.3.6	PS.calvin cycle.aldolase	2 (0.37%)	0	0	0	2	0	0	0	0
13.1.1	amino acid metabolism.synthesis.central amino acid metabolism	2 (0.37%)	0	0	0	0	2	0	0	0
13.1.1.2	amino acid metabolism.synthesis.central amino acid metabolism.aspartate	2 (0.37%)	0	0	0	0	2	0	0	0
13.1.1.2.1	amino acid metabolism.synthesis.central amino acid metabolism.aspartate.aspartate aminotransferase	2 (0.37%)	0	0	0	0	2	0	0	0
13.1.3.4.12	amino acid metabolism.synthesis.aspartate family.methionine.homocysteine S-methyltransferase	2 (0.37%)	0	1	0	0	0	0	0	1
13.1.6.1.1	amino acid metabolism.synthesis.aromatic aa.chorismate.3-deoxy-D-arabino-heptulosonate 7-phosphate synthase	2 (0.37%)	0	0	0	0	2	0	0	0
13.1.6.1.2	amino acid metabolism.synthesis.aromatic aa.chorismate.3-dehydroquinate synthase	2 (0.37%)	0	0	0	1	1	0	0	0
13.2.6.3	amino acid metabolism.degradation.aromatic aa.tryptophan	2 (0.37%)	0	1	0	0	1	0	0	0
16.2.1.10	secondary metabolism.phenylpropanoids.lignin biosynthesis.CAD	2 (0.37%)	0	0	0	2	0	0	0	0
16.8.3	secondary metabolism.flavonoids.dihydroflavonols	2 (0.37%)	0	0	0	2	0	0	0	0
16.8.3.1	secondary metabolism.flavonoids.dihydroflavonols.dihydroflavonol 4-reductase	2 (0.37%)	0	0	0	2	0	0	0	0
20.2.99	stress.abiotic.unspecified	2 (0.37%)	0	0	0	1	1	0	0	0
23.4.99	nucleotide metabolism.phosphotransfer and pyrophosphatases.misc	2 (0.37%)	0	1	0	0	1	0	0	0
25	C1-metabolism	2 (0.37%)	1	1	0	0	0	0	0	0
27.1	RNA.processing	2 (0.37%)	0	0	0	0	2	0	0	0
27.2	RNA.transcription	2 (0.37%)	0	0	0	1	1	0	0	0
27.3.21	RNA.regulation of transcription.GRAS transcription factor family	2 (0.37%)	0	0	0	0	0	0	2	0
27.3.26	RNA.regulation of transcription.MYB-related transcription factor family	2 (0.37%)	0	1	0	0	1	0	0	0
27.3.32	RNA.regulation of transcription.WRKY domain transcription factor family	2 (0.37%)	0	0	0	2	0	0	0	0
27.3.50	RNA.regulation of transcription.General Transcription	2 (0.37%)	0	0	0	2	0	0	0	0
28.1.3	DNA.synthesis/chromatin structure.histone	2 (0.37%)	0	0	0	0	2	0	0	0
7.2	OPP.non-reductive PP	2 (0.37%)	0	0	0	1	0	0	1	0
34.18	transport.unspecified anions	2 (0.37%)	0	0	0	1	1	0	0	0
34.21	transport.calcium	2 (0.37%)	1	0	0	0	1	0	0	0
7.2.3	OPP.non-reductive PP.ribulose-phosphate 3-epimerase	2 (0.37%)	0	0	0	1	0	0	1	0
1.3.11	PS.calvin cycle.RPE	1 (0.19%)	0	0	0	1	0	0	0	0
10.2	cell wall.cellulose synthesis	1 (0.19%)	0	0	0	0	0	0	1	0
10.2.1	cell wall.cellulose synthesis.cellulose synthase	1 (0.19%)	0	0	0	0	0	0	1	0
11.9.4	lipid metabolism.lipid degradation.beta-oxidation	1 (0.19%)	1	0	0	0	0	0	0	0
11.9.4.5	lipid metabolism.lipid degradation.beta-oxidation.acyl-CoA thioesterase	1 (0.19%)	1	0	0	0	0	0	0	0
12.1	N-metabolism.nitrate metabolism	1 (0.19%)	0	0	0	0	1	0	0	0
12.1.1	N-metabolism.nitrate metabolism.NR	1 (0.19%)	0	0	0	0	1	0	0	0
13.2.4	amino acid metabolism.degradation.branched chain group	1 (0.19%)	0	0	0	0	0	0	1	0
13.2.4.4	amino acid metabolism.degradation.branched chain group.leucine	1 (0.19%)	0	0	0	0	0	0	1	0
16.1	secondary metabolism.isoprenoids	1 (0.19%)	0	0	1	0	0	0	0	0
16.1.4	secondary metabolism.isoprenoids.carotenoids	1 (0.19%)	0	0	1	0	0	0	0	0
16.1.4.6	secondary metabolism.isoprenoids.carotenoids.carotenoid beta ring hydroxylase	1 (0.19%)	0	0	1	0	0	0	0	0
16.2.1.4	secondary metabolism.phenylpropanoids.lignin biosynthesis.HCT	1 (0.19%)	1	0	0	0	0	0	0	0
16.2.1.5	secondary metabolism.phenylpropanoids.lignin biosynthesis.C3H	1 (0.19%)	1	0	0	0	0	0	0	0
16.2.1.6	secondary metabolism.phenylpropanoids.lignin biosynthesis.CCoAOMT	1 (0.19%)	0	0	0	0	0	0	0	1
16.8.2.2	secondary metabolism.flavonoids.chalcones.chalcone isomerase	1 (0.19%)	1	0	0	0	0	0	0	0
17.2	hormone metabolism.auxin	1 (0.19%)	0	0	0	0	1	0	0	0
17.2.2	hormone metabolism.auxin.signal transduction	1 (0.19%)	0	0	0	0	1	0	0	0
17.5	hormone metabolism.ethylene	1 (0.19%)	0	0	1	0	0	0	0	0
17.5.1	hormone metabolism.ethylene.synthesis-degradation	1 (0.19%)	0	0	1	0	0	0	0	0
17.5.1.2	hormone metabolism.ethylene.synthesis-degradation.1-aminocyclopropane-1-carboxylate oxidase	1 (0.19%)	0	0	1	0	0	0	0	0
17.6	hormone metabolism.gibberelin	1 (0.19%)	1	0	0	0	0	0	0	0
17.6.3	hormone metabolism.gibberelin.induced-regulated-responsive-activated	1 (0.19%)	1	0	0	0	0	0	0	0
17.8	hormone metabolism.salicylic acid	1 (0.19%)	0	1	0	0	0	0	0	0
17.8.1	hormone metabolism.salicylic acid.synthesis-degradation	1 (0.19%)	0	1	0	0	0	0	0	0
20.1.1	stress.biotic.respiratory burst	1 (0.19%)	0	0	0	0	1	0	0	0
20.1.7	stress.biotic.PR-proteins	1 (0.19%)	1	0	0	0	0	0	0	0
20.2.2	stress.abiotic.cold	1 (0.19%)	0	0	0	0	1	0	0	0
21.4	redox.glutaredoxins	1 (0.19%)	0	0	0	1	0	0	0	0
21.99	redox.misc	1 (0.19%)	0	0	0	0	1	0	0	0
25.1	C1-metabolism.glycine hydroxymethyltransferase	1 (0.19%)	0	1	0	0	0	0	0	0
25.6	C1-metabolism.methylenetetrahydrofolate reductase	1 (0.19%)	1	0	0	0	0	0	0	0
26.11.1	misc.alcohol dehydrogenases.cinnamyl alcohol dehydrogenase	1 (0.19%)	0	0	0	0	0	0	1	0
26.22	misc.short chain dehydrogenase/reductase (SDR)	1 (0.19%)	0	1	0	0	0	0	0	0
26.28	misc.GDSL-motif lipase	1 (0.19%)	0	0	0	0	0	0	1	0
26.4	misc.beta 1,3 glucan hydrolases	1 (0.19%)	0	0	0	0	0	1	0	0
26.8	misc.nitrilases, *nitrile lyases, berberine bridge enzymes, reticuline oxidases, troponine reductases	1 (0.19%)	0	0	0	0	0	0	0	1
27.1.19	RNA.processing.ribonucleases	1 (0.19%)	0	0	0	0	1	0	0	0
27.3.13	RNA.regulation of transcription.CCAAT box binding factor family, DR1	1 (0.19%)	0	0	0	0	1	0	0	0
27.3.24	RNA.regulation of transcription.MADS box transcription factor family	1 (0.19%)	0	0	0	0	0	0	1	0
27.3.3	RNA.regulation of transcription.AP2/EREBP, APETALA2/Ethylene-responsive element binding protein family	1 (0.19%)	0	0	0	1	0	0	0	0
27.3.37	RNA.regulation of transcription.AS2,Lateral Organ Boundaries Gene Family	1 (0.19%)	0	0	0	1	0	0	0	0
27.3.40	RNA.regulation of transcription.Aux/IAA family	1 (0.19%)	0	0	0	0	0	0	0	1
27.3.60	RNA.regulation of transcription.NIN-like bZIP-related family	1 (0.19%)	0	0	0	0	1	0	0	0
27.3.62	RNA.regulation of transcription.Nucleosome/chromatin assembly factor group	1 (0.19%)	0	0	0	0	1	0	0	0
27.3.68	RNA.regulation of transcription.PWWP domain protein	1 (0.19%)	0	0	0	0	0	0	1	0
27.3.69	RNA.regulation of transcription.SET-domain transcriptional regulator family	1 (0.19%)	0	0	0	0	1	0	0	0
27.3.7	RNA.regulation of transcription.C2C2(Zn) CO-like, Constans-like zinc finger family	1 (0.19%)	0	0	0	0	0	0	0	1
27.3.73	RNA.regulation of transcription.Zn-finger(CCHC)	1 (0.19%)	0	0	0	1	0	0	0	0
27.3.80	RNA.regulation of transcription.zf-HD	1 (0.19%)	0	0	0	0	0	0	1	0
28.1.3.1	DNA.synthesis/chromatin structure.histone.H1	1 (0.19%)	0	0	0	0	1	0	0	0
28.1.3.2	DNA.synthesis/chromatin structure.histone.core	1 (0.19%)	0	0	0	0	1	0	0	0
28.1.3.2.3	DNA.synthesis/chromatin structure.histone.core.H3	1 (0.19%)	0	0	0	0	1	0	0	0
29.2.1.1.2.2.2	protein.synthesis.ribosomal protein.prokaryotic.mitochondrion.50S subunit.L2	1 (0.19%)	0	0	0	0	0	0	1	0
29.3.5	protein.targeting.peroxisomes	1 (0.19%)	0	0	0	0	1	0	0	0
29.5	protein.degradation	1 (0.19%)	0	0	0	0	1	0	0	0
29.5.11	protein.degradation.ubiquitin	1 (0.19%)	0	0	0	0	1	0	0	0
29.5.11.1	protein.degradation.ubiquitin.ubiquitin	1 (0.19%)	0	0	0	0	1	0	0	0
30.2.24	signalling.receptor kinases.S-locus glycoprotein like	1 (0.19%)	0	0	0	0	1	0	0	0
30.2.3	signalling.receptor kinases.leucine rich repeat III	1 (0.19%)	0	1	0	0	0	0	0	0
30.4.1	signalling.phosphinositides.phosphatidylinositol-4-phosphate 5-kinase	1 (0.19%)	0	0	0	0	1	0	0	0
7.1	OPP.oxidative PP	1 (0.19%)	0	0	0	0	0	0	0	1
8.2	TCA / org transformation.other organic acid transformations	1 (0.19%)	0	0	0	0	0	1	0	0
8.3	TCA / org transformation.carbonic anhydrases	1 (0.19%)	0	0	0	0	0	0	1	0
9.1	mitochondrial electron transport / ATP synthesis.NADH-DH	1 (0.19%)	0	0	0	0	0	0	1	0
30.4	signalling.phosphinositides	1 (0.19%)	0	0	0	0	1	0	0	0
31.3	cell.cycle	1 (0.19%)	0	0	0	0	0	0	1	0
31.4	cell.vesicle transport	1 (0.19%)	0	0	0	1	0	0	0	0
33.3	development.squamosa promoter binding like (SPL)	1 (0.19%)	1	0	0	0	0	0	0	0
34.12	transport.metal	1 (0.19%)	1	0	0	0	0	0	0	0
34.15	transport.potassium	1 (0.19%)	0	0	0	1	0	0	0	0
34.2	transport.sugars	1 (0.19%)	0	1	0	0	0	0	0	0
34.3	transport.amino acids	1 (0.19%)	0	0	0	0	0	1	0	0
7.1.1	OPP.oxidative PP.G6PD	1 (0.19%)	0	0	0	0	0	0	0	1
8.2.11	TCA / org transformation.other organic acid transformatons.atp-citrate lyase	1 (0.19%)	0	0	0	0	0	1	0	0
9.1.2	mitochondrial electron transport / ATP synthesis.NADH-DH.localisation not clear	1 (0.19%)	0	0	0	0	0	0	1	0