PLAZA 3.0 Dicots : Binding Sites

MapMan terms associated with a binding site

Binding site: Matrix_258
Name: WOX13
Description: N/A

#Associated genes: 330
#Associated MapMan terms: 129

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MapMan	Description	#Associated genes	ath	bra	egr	gma	ptr	ppe	sly	vvi
27	RNA	47 (14.24%)	2	3	3	12	14	3	4	6
29	protein	44 (13.33%)	3	7	8	9	9	5	0	3
27.3	RNA.regulation of transcription	40 (12.12%)	2	3	3	12	9	3	3	5
29.4	protein.postranslational modification	25 (7.58%)	1	3	5	6	6	3	0	1
30	signalling	16 (4.85%)	0	1	2	1	8	2	0	2
34	transport	15 (4.55%)	2	0	3	3	4	2	1	0
28	DNA	11 (3.33%)	1	0	1	2	4	1	1	1
29.3	protein.targeting	11 (3.33%)	1	1	0	3	3	1	0	2
31	cell	9 (2.73%)	2	0	1	2	2	0	1	1
33	development	9 (2.73%)	0	1	2	1	2	3	0	0
27.3.11	RNA.regulation of transcription.C2H2 zinc finger family	8 (2.42%)	0	1	0	3	2	1	0	1
28.1	DNA.synthesis/chromatin structure	8 (2.42%)	1	0	1	0	4	1	1	0
33.99	development.unspecified	8 (2.42%)	0	0	2	1	2	3	0	0
27.3.10	RNA.regulation of transcription.C2C2(Zn) YABBY family	7 (2.12%)	0	0	0	3	0	0	1	3
8	TCA / org transformation	6 (1.82%)	0	1	1	2	1	0	1	0
29.5.11.4.3.2	protein.degradation.ubiquitin.E3.SCF.FBOX	6 (1.82%)	0	0	0	2	3	1	0	0
8.1	TCA / org transformation.TCA	6 (1.82%)	0	1	1	2	1	0	1	0
30.2	signalling.receptor kinases	6 (1.82%)	0	1	2	0	1	0	0	2
31.1	cell.organisation	6 (1.82%)	0	0	1	1	2	0	1	1
3	minor CHO metabolism	5 (1.52%)	1	0	0	0	2	1	1	0
29.3.1	protein.targeting.nucleus	5 (1.52%)	0	1	0	2	1	0	0	1
29.3.4	protein.targeting.secretory pathway	5 (1.52%)	1	0	0	1	1	1	0	1
29.5	protein.degradation	5 (1.52%)	1	3	0	0	0	1	0	0
29.5.11.4.2	protein.degradation.ubiquitin.E3.RING	5 (1.52%)	1	0	2	0	1	0	1	0
30.3	signalling.calcium	5 (1.52%)	0	0	0	1	3	1	0	0
8.1.1	TCA / org transformation.TCA.pyruvate DH	5 (1.52%)	0	1	1	2	0	0	1	0
8.1.1.1	TCA / org transformation.TCA.pyruvate DH.E1	5 (1.52%)	0	1	1	2	0	0	1	0
11	lipid metabolism	4 (1.21%)	1	0	0	1	0	1	0	1
16	secondary metabolism	4 (1.21%)	0	0	0	2	0	1	1	0
16.1	secondary metabolism.isoprenoids	4 (1.21%)	0	0	0	2	0	1	1	0
27.1	RNA.processing	4 (1.21%)	0	0	0	0	3	0	0	1
27.3.3	RNA.regulation of transcription.AP2/EREBP, APETALA2/Ethylene-responsive element binding protein family	4 (1.21%)	0	0	1	0	2	1	0	0
27.3.99	RNA.regulation of transcription.unclassified	4 (1.21%)	1	0	1	1	1	0	0	0
29.3.4.3	protein.targeting.secretory pathway.vacuole	4 (1.21%)	1	0	0	1	1	1	0	0
29.4.1	protein.postranslational modification.kinase	4 (1.21%)	0	0	2	1	1	0	0	0
29.4.1.57	protein.postranslational modification.kinase.receptor like cytoplasmatic kinase VII	4 (1.21%)	0	0	2	1	1	0	0	0
3.6	minor CHO metabolism.callose	4 (1.21%)	1	0	0	0	1	1	1	0
34.13	transport.peptides and oligopeptides	4 (1.21%)	0	0	1	1	1	0	1	0
34.19	transport.Major Intrinsic Proteins	4 (1.21%)	1	0	1	0	2	0	0	0
34.99	transport.misc	4 (1.21%)	1	0	0	2	1	0	0	0
10	cell wall	3 (0.91%)	0	0	0	1	0	0	1	1
16.1.2	secondary metabolism.isoprenoids.mevalonate pathway	3 (0.91%)	0	0	0	2	0	1	0	0
16.1.2.7	secondary metabolism.isoprenoids.mevalonate pathway.isopentenyl pyrophosphate:dimethyllallyl pyrophosphate isomerase	3 (0.91%)	0	0	0	2	0	1	0	0
17	hormone metabolism	3 (0.91%)	0	1	1	0	0	1	0	0
26	misc	3 (0.91%)	0	0	2	0	0	1	0	0
27.3.19	RNA.regulation of transcription.EIN3-like(EIL) transcription factor family	3 (0.91%)	1	2	0	0	0	0	0	0
28.99	DNA.unspecified	3 (0.91%)	0	0	0	2	0	0	0	1
30.11	signalling.light	3 (0.91%)	0	0	0	0	3	0	0	0
34.19.1	transport.Major Intrinsic Proteins.PIP	3 (0.91%)	1	0	1	0	1	0	0	0
10.6	cell wall.degradation	2 (0.61%)	0	0	0	1	0	0	1	0
10.6.3	cell wall.degradation.pectate lyases and polygalacturonases	2 (0.61%)	0	0	0	1	0	0	1	0
11.9	lipid metabolism.lipid degradation	2 (0.61%)	1	0	0	1	0	0	0	0
11.9.2	lipid metabolism.lipid degradation.lipases	2 (0.61%)	1	0	0	1	0	0	0	0
13	amino acid metabolism	2 (0.61%)	0	0	0	1	1	0	0	0
13.1	amino acid metabolism.synthesis	2 (0.61%)	0	0	0	1	1	0	0	0
13.1.6	amino acid metabolism.synthesis.aromatic aa	2 (0.61%)	0	0	0	1	1	0	0	0
13.1.6.2	amino acid metabolism.synthesis.aromatic aa.phenylalanine and tyrosine	2 (0.61%)	0	0	0	1	1	0	0	0
26.8	misc.nitrilases, *nitrile lyases, berberine bridge enzymes, reticuline oxidases, troponine reductases	2 (0.61%)	0	0	1	0	0	1	0	0
27.1.1	RNA.processing.splicing	2 (0.61%)	0	0	0	0	1	0	0	1
27.3.25	RNA.regulation of transcription.MYB domain transcription factor family	2 (0.61%)	0	0	0	2	0	0	0	0
27.3.41	RNA.regulation of transcription.B3 transcription factor family	2 (0.61%)	0	0	0	0	2	0	0	0
27.3.51	RNA.regulation of transcription.General Transcription, TBP-binding protein	2 (0.61%)	0	0	0	0	1	0	1	0
27.3.6	RNA.regulation of transcription.bHLH,Basic Helix-Loop-Helix family	2 (0.61%)	0	0	0	1	1	0	0	0
27.4	RNA.RNA binding	2 (0.61%)	0	0	0	0	2	0	0	0
28.1.3	DNA.synthesis/chromatin structure.histone	2 (0.61%)	0	0	0	0	1	1	0	0
28.1.3.2	DNA.synthesis/chromatin structure.histone.core	2 (0.61%)	0	0	0	0	1	1	0	0
28.1.3.2.3	DNA.synthesis/chromatin structure.histone.core.H3	2 (0.61%)	0	0	0	0	1	1	0	0
29.2	protein.synthesis	2 (0.61%)	0	0	2	0	0	0	0	0
29.2.3	protein.synthesis.initiation	2 (0.61%)	0	0	2	0	0	0	0	0
30.2.11	signalling.receptor kinases.leucine rich repeat XI	2 (0.61%)	0	1	0	0	0	0	0	1
30.2.17	signalling.receptor kinases.DUF 26	2 (0.61%)	0	0	1	0	1	0	0	0
30.5	signalling.G-proteins	2 (0.61%)	0	0	0	0	1	1	0	0
31.4	cell.vesicle transport	2 (0.61%)	1	0	0	1	0	0	0	0
34.15	transport.potassium	2 (0.61%)	0	0	1	0	0	1	0	0
1	PS	1 (0.30%)	0	0	0	1	0	0	0	0
1.1	PS.lightreaction	1 (0.30%)	0	0	0	1	0	0	0	0
1.1.40	PS.lightreaction.cyclic electron flow-chlororespiration	1 (0.30%)	0	0	0	1	0	0	0	0
4	glycolysis	1 (0.30%)	0	0	0	1	0	0	0	0
7	OPP	1 (0.30%)	0	0	0	0	1	0	0	0
10.7	cell wall.modification	1 (0.30%)	0	0	0	0	0	0	0	1
11.3	lipid metabolism.Phospholipid synthesis	1 (0.30%)	0	0	0	0	0	0	0	1
11.8	lipid metabolism.exotics(steroids, squalene etc)	1 (0.30%)	0	0	0	0	0	1	0	0
11.8.1	lipid metabolism.exotics (steroids, squalene etc).sphingolipids	1 (0.30%)	0	0	0	0	0	1	0	0
13.1.2.3.21	amino acid metabolism.synthesis.glutamate family.arginine.ornithine carbamoyltransferase	1 (0.30%)	1	0	0	0	0	0	0	0
16.1.5	secondary metabolism.isoprenoids.terpenoids	1 (0.30%)	0	0	0	0	0	0	1	0
17.2.3	hormone metabolism.auxin.induced-regulated-responsive-activated	1 (0.30%)	0	0	1	0	0	0	0	0
3.1	minor CHO metabolism.raffinose family	1 (0.30%)	0	0	0	0	1	0	0	0
4.1	glycolysis.cytosolic branch	1 (0.30%)	0	0	0	1	0	0	0	0
7.1	OPP.oxidative PP	1 (0.30%)	0	0	0	0	1	0	0	0
17.2	hormone metabolism.auxin	1 (0.30%)	0	0	1	0	0	0	0	0
17.4	hormone metabolism.cytokinin	1 (0.30%)	0	0	0	0	0	1	0	0
17.4.2	hormone metabolism.cytokinin.signal transduction	1 (0.30%)	0	0	0	0	0	1	0	0
17.7	hormone metabolism.jasmonate	1 (0.30%)	0	1	0	0	0	0	0	0
17.7.1	hormone metabolism.jasmonate.synthesis-degradation	1 (0.30%)	0	1	0	0	0	0	0	0
17.7.1.5	hormone metabolism.jasmonate.synthesis-degradation.12-Oxo-PDA-reductase	1 (0.30%)	0	1	0	0	0	0	0	0
20.1	stress.biotic	1 (0.30%)	0	0	0	0	0	0	0	1
21.6	redox.dismutases and catalases	1 (0.30%)	0	0	0	1	0	0	0	0
26.10	misc.cytochrome P450	1 (0.30%)	0	0	1	0	0	0	0	0
27.2	RNA.transcription	1 (0.30%)	0	0	0	0	0	0	1	0
27.3.22	RNA.regulation of transcription.HB,Homeobox transcription factor family	1 (0.30%)	0	0	1	0	0	0	0	0
27.3.29	RNA.regulation of transcription.TCP transcription factor family	1 (0.30%)	0	0	0	1	0	0	0	0
27.3.32	RNA.regulation of transcription.WRKY domain transcription factor family	1 (0.30%)	0	0	0	0	0	1	0	0
27.3.37	RNA.regulation of transcription.AS2,Lateral Organ Boundaries Gene Family	1 (0.30%)	0	0	0	0	0	0	0	1
27.3.67	RNA.regulation of transcription.putative transcription regulator	1 (0.30%)	0	0	0	1	0	0	0	0
27.3.69	RNA.regulation of transcription.SET-domain transcriptional regulator family	1 (0.30%)	0	0	0	0	0	0	1	0
29.1	protein.aa activation	1 (0.30%)	0	0	1	0	0	0	0	0
29.1.14	protein.aa activation.glycine-tRNA ligase	1 (0.30%)	0	0	1	0	0	0	0	0
29.2.1.2.2.34	protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L34	1 (0.30%)	0	1	0	0	0	0	0	0
29.3.2	protein.targeting.mitochondria	1 (0.30%)	0	0	0	0	1	0	0	0
29.3.4.99	protein.targeting.secretory pathway.unspecified	1 (0.30%)	0	0	0	0	0	0	0	1
29.5.11.4.3.1	protein.degradation.ubiquitin.E3.SCF.SKP	1 (0.30%)	0	1	0	0	0	0	0	0
29.5.4	protein.degradation.aspartate protease	1 (0.30%)	1	0	0	0	0	0	0	0
29.5.7	protein.degradation.metalloprotease	1 (0.30%)	0	1	0	0	0	0	0	0
29.5.9	protein.degradation.AAA type	1 (0.30%)	0	0	0	0	0	1	0	0
3.1.2	minor CHO metabolism.raffinose family.raffinose synthases	1 (0.30%)	0	0	0	0	1	0	0	0
3.1.2.2	minor CHO metabolism.raffinose family.raffinose synthases.putative	1 (0.30%)	0	0	0	0	1	0	0	0
30.2.3	signalling.receptor kinases.leucine rich repeat III	1 (0.30%)	0	0	0	0	0	0	0	1
30.2.99	signalling.receptor kinases.misc	1 (0.30%)	0	0	1	0	0	0	0	0
31.3	cell.cycle	1 (0.30%)	1	0	0	0	0	0	0	0
33.30	development.multitarget	1 (0.30%)	0	1	0	0	0	0	0	0
33.30.1	development.multitarget.target of rapamycin	1 (0.30%)	0	1	0	0	0	0	0	0
34.19.3	transport.Major Intrinsic Proteins.NIP	1 (0.30%)	0	0	0	0	1	0	0	0
34.4	transport.nitrate	1 (0.30%)	0	0	0	0	0	1	0	0
4.1.14	glycolysis.cytosolic branch.pyruvate kinase (PK)	1 (0.30%)	0	0	0	1	0	0	0	0
7.1.1	OPP.oxidative PP.G6PD	1 (0.30%)	0	0	0	0	1	0	0	0
8.1.9	TCA / org transformation.TCA.malate DH	1 (0.30%)	0	0	0	0	1	0	0	0
18	Co-factor and vitamine metabolism	1 (0.30%)	1	0	0	0	0	0	0	0
20	stress	1 (0.30%)	0	0	0	0	0	0	0	1
21	redox	1 (0.30%)	0	0	0	1	0	0	0	0