PLAZA 3.0 Dicots : Binding Sites

MapMan terms associated with a binding site

Binding site: Matrix_245
Name: WRKY62;WRKY38
Description: N/A

#Associated genes: 523
#Associated MapMan terms: 154

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MapMan	Description	#Associated genes	ath	bra	gma	ptr	ppe	sly	vvi
27	RNA	114 (21.80%)	7	17	44	29	0	5	12
27.3	RNA.regulation of transcription	109 (20.84%)	7	17	43	26	0	5	11
29	protein	55 (10.52%)	6	8	12	15	0	8	6
29.4	protein.postranslational modification	37 (7.07%)	4	6	7	11	0	5	4
26	misc	32 (6.12%)	5	5	5	9	2	3	3
30	signalling	26 (4.97%)	3	4	7	8	0	3	1
27.3.32	RNA.regulation of transcription.WRKY domain transcription factor family	16 (3.06%)	0	0	6	7	0	2	1
27.3.6	RNA.regulation of transcription.bHLH,Basic Helix-Loop-Helix family	16 (3.06%)	0	1	11	3	0	0	1
27.3.22	RNA.regulation of transcription.HB,Homeobox transcription factor family	14 (2.68%)	1	3	5	3	0	1	1
34	transport	14 (2.68%)	1	2	4	2	1	1	3
27.3.3	RNA.regulation of transcription.AP2/EREBP, APETALA2/Ethylene-responsive element binding protein family	13 (2.49%)	1	3	3	5	0	0	1
30.2	signalling.receptor kinases	13 (2.49%)	1	2	5	5	0	0	0
31	cell	13 (2.49%)	2	2	4	1	0	3	1
29.5.11.4.2	protein.degradation.ubiquitin.E3.RING	11 (2.10%)	1	3	3	2	0	1	1
10	cell wall	10 (1.91%)	3	2	3	2	0	0	0
17	hormone metabolism	10 (1.91%)	2	1	2	3	0	1	1
11	lipid metabolism	9 (1.72%)	2	2	2	2	0	0	1
20	stress	9 (1.72%)	1	0	0	5	0	2	1
29.5	protein.degradation	9 (1.72%)	1	2	2	1	0	2	1
27.3.25	RNA.regulation of transcription.MYB domain transcription factor family	8 (1.53%)	1	2	3	0	0	1	1
26.12	misc.peroxidases	7 (1.34%)	0	0	1	3	0	2	1
26.2	misc.UDP glucosyl and glucoronyl transferases	7 (1.34%)	2	1	2	2	0	0	0
27.3.67	RNA.regulation of transcription.putative transcription regulator	7 (1.34%)	1	1	4	0	0	0	1
27.3.99	RNA.regulation of transcription.unclassified	7 (1.34%)	0	0	4	2	0	0	1
30.2.11	signalling.receptor kinases.leucine rich repeat XI	7 (1.34%)	0	2	2	3	0	0	0
10.6	cell wall.degradation	6 (1.15%)	2	1	2	1	0	0	0
13	amino acid metabolism	6 (1.15%)	0	1	1	2	0	2	0
20.1	stress.biotic	6 (1.15%)	1	0	0	4	0	0	1
26.9	misc.glutathione S transferases	6 (1.15%)	3	0	2	0	0	0	1
29.4.1	protein.postranslational modification.kinase	6 (1.15%)	0	0	0	2	0	2	2
29.4.1.57	protein.postranslational modification.kinase.receptor like cytoplasmatic kinase VII	6 (1.15%)	0	0	0	2	0	2	2
30.3	signalling.calcium	6 (1.15%)	1	1	0	0	0	3	1
31.1	cell.organisation	6 (1.15%)	1	0	4	0	0	1	0
33	development	6 (1.15%)	1	0	1	2	0	1	1
34.16	transport.ABC transporters and multidrug resistance systems	6 (1.15%)	0	1	2	1	1	0	1
10.6.3	cell wall.degradation.pectate lyases and polygalacturonases	5 (0.96%)	2	1	2	0	0	0	0
13.2	amino acid metabolism.degradation	5 (0.96%)	0	1	0	2	0	2	0
19	tetrapyrrole synthesis	5 (0.96%)	0	0	2	1	1	1	0
19.20	tetrapyrrole synthesis.ferrochelatase	5 (0.96%)	0	0	2	1	1	1	0
27.3.37	RNA.regulation of transcription.AS2,Lateral Organ Boundaries Gene Family	5 (0.96%)	0	1	0	3	0	0	1
27.3.7	RNA.regulation of transcription.C2C2(Zn) CO-like, Constans-like zinc finger family	5 (0.96%)	0	1	3	1	0	0	0
29.7	protein.glycosylation	5 (0.96%)	0	0	2	2	0	0	1
33.99	development.unspecified	5 (0.96%)	1	0	1	1	0	1	1
9	mitochondrial electron transport / ATP synthesis	4 (0.76%)	0	0	2	0	0	2	0
11.8	lipid metabolism.exotics(steroids, squalene etc)	4 (0.76%)	1	1	1	1	0	0	0
13.2.3	amino acid metabolism.degradation.aspartate family	4 (0.76%)	0	1	0	1	0	2	0
15	metal handling	4 (0.76%)	0	0	2	1	0	0	1
15.2	metal handling.binding, chelation and storage	4 (0.76%)	0	0	2	1	0	0	1
26.3	misc.gluco-, galacto- and mannosidases	4 (0.76%)	0	0	0	3	1	0	0
29.5.5	protein.degradation.serine protease	4 (0.76%)	0	1	1	1	0	0	1
9.9	mitochondrial electron transport / ATP synthesis.F1-ATPase	4 (0.76%)	0	0	2	0	0	2	0
34.3	transport.amino acids	4 (0.76%)	0	0	2	1	0	0	1
13.2.3.5	amino acid metabolism.degradation.aspartate family.lysine	3 (0.57%)	0	0	0	1	0	2	0
17.2	hormone metabolism.auxin	3 (0.57%)	0	1	0	1	0	1	0
17.2.3	hormone metabolism.auxin.induced-regulated-responsive-activated	3 (0.57%)	0	1	0	1	0	1	0
17.4	hormone metabolism.cytokinin	3 (0.57%)	0	0	2	1	0	0	0
17.4.1	hormone metabolism.cytokinin.synthesis-degradation	3 (0.57%)	0	0	2	1	0	0	0
20.2	stress.abiotic	3 (0.57%)	0	0	0	1	0	2	0
26.10	misc.cytochrome P450	3 (0.57%)	0	2	0	0	0	0	1
27.3.40	RNA.regulation of transcription.Aux/IAA family	3 (0.57%)	1	1	0	0	0	0	1
27.3.70	RNA.regulation of transcription.Silencing Group	3 (0.57%)	0	0	1	0	0	1	1
27.3.80	RNA.regulation of transcription.zf-HD	3 (0.57%)	1	1	0	0	0	0	1
27.4	RNA.RNA binding	3 (0.57%)	0	0	1	2	0	0	0
28	DNA	3 (0.57%)	0	0	1	1	0	0	1
29.3	protein.targeting	3 (0.57%)	0	0	1	1	0	1	0
29.5.11.4.3.2	protein.degradation.ubiquitin.E3.SCF.FBOX	3 (0.57%)	0	3	0	0	0	0	0
29.5.7	protein.degradation.metalloprotease	3 (0.57%)	1	1	0	0	0	1	0
30.4	signalling.phosphinositides	3 (0.57%)	0	1	1	1	0	0	0
30.4.2	signalling.phosphinositides.phosphatidylinositol 4-kinase	3 (0.57%)	0	1	1	1	0	0	0
31.3	cell.cycle	3 (0.57%)	1	1	0	0	0	0	1
10.3	cell wall.hemicellulose synthesis	2 (0.38%)	0	0	1	1	0	0	0
11.1	lipid metabolism.FA synthesis and FA elongation	2 (0.38%)	1	0	1	0	0	0	0
11.1.8	lipid metabolism.FA synthesis and FA elongation.acyl coa ligase	2 (0.38%)	1	0	1	0	0	0	0
11.3	lipid metabolism.Phospholipid synthesis	2 (0.38%)	0	0	0	1	0	0	1
11.8.1	lipid metabolism.exotics (steroids, squalene etc).sphingolipids	2 (0.38%)	1	1	0	0	0	0	0
16	secondary metabolism	2 (0.38%)	1	0	1	0	0	0	0
16.10	secondary metabolism.simple phenols	2 (0.38%)	1	0	1	0	0	0	0
17.5	hormone metabolism.ethylene	2 (0.38%)	0	0	0	1	0	0	1
20.2.99	stress.abiotic.unspecified	2 (0.38%)	0	0	0	1	0	1	0
26.7	misc.oxidases - copper, flavone etc	2 (0.38%)	0	0	0	0	1	1	0
27.1	RNA.processing	2 (0.38%)	0	0	0	1	0	0	1
27.3.11	RNA.regulation of transcription.C2H2 zinc finger family	2 (0.38%)	1	1	0	0	0	0	0
27.3.44	RNA.regulation of transcription.Chromatin Remodeling Factors	2 (0.38%)	0	1	0	1	0	0	0
28.1	DNA.synthesis/chromatin structure	2 (0.38%)	0	0	0	1	0	0	1
30.2.20	signalling.receptor kinases.wheat LRK10 like	2 (0.38%)	0	0	1	1	0	0	0
30.6	signalling.MAP kinases	2 (0.38%)	1	0	0	1	0	0	0
31.4	cell.vesicle transport	2 (0.38%)	0	1	0	1	0	0	0
31.5	cell.cell death	2 (0.38%)	0	0	0	0	0	2	0
34.99	transport.misc	2 (0.38%)	0	1	0	0	0	1	0
3	minor CHO metabolism	1 (0.19%)	0	0	0	0	0	0	1
10.1	cell wall.precursor synthesis	1 (0.19%)	1	0	0	0	0	0	0
10.1.1	cell wall.precursor synthesis.NDP sugar pyrophosphorylase	1 (0.19%)	1	0	0	0	0	0	0
10.1.1.20	cell wall.precursor synthesis.NDP sugar pyrophosphorylase.multiple NDP-Sugars	1 (0.19%)	1	0	0	0	0	0	0
10.6.1	cell wall.degradation.cellulases and beta -1,4-glucanases	1 (0.19%)	0	0	0	1	0	0	0
10.7	cell wall.modification	1 (0.19%)	0	1	0	0	0	0	0
11.9	lipid metabolism.lipid degradation	1 (0.19%)	0	1	0	0	0	0	0
11.9.4	lipid metabolism.lipid degradation.beta-oxidation	1 (0.19%)	0	1	0	0	0	0	0
11.9.4.2	lipid metabolism.lipid degradation.beta-oxidation.acyl CoA DH	1 (0.19%)	0	1	0	0	0	0	0
13.1	amino acid metabolism.synthesis	1 (0.19%)	0	0	1	0	0	0	0
13.1.5	amino acid metabolism.synthesis.serine-glycine-cysteine group	1 (0.19%)	0	0	1	0	0	0	0
13.1.5.3	amino acid metabolism.synthesis.serine-glycine-cysteine group.cysteine	1 (0.19%)	0	0	1	0	0	0	0
13.1.5.3.1	amino acid metabolism.synthesis.serine-glycine-cysteine group.cysteine.OASTL	1 (0.19%)	0	0	1	0	0	0	0
13.2.3.4	amino acid metabolism.degradation.aspartate family.methionine	1 (0.19%)	0	1	0	0	0	0	0
13.2.3.5.1	mino acid metabolism.degradation.aspartate family.lysine.lysine decarboxylase	1 (0.19%)	0	0	0	1	0	0	0
13.2.5	amino acid metabolism.degradation.serine-glycine-cysteine group	1 (0.19%)	0	0	0	1	0	0	0
13.2.5.2	amino acid metabolism.degradation.serine-glycine-cysteine group.glycine	1 (0.19%)	0	0	0	1	0	0	0
17.3	hormone metabolism.brassinosteroid	1 (0.19%)	1	0	0	0	0	0	0
17.3.2	hormone metabolism.brassinosteroid.signal transduction	1 (0.19%)	1	0	0	0	0	0	0
17.3.2.99	hormone metabolism.brassinosteroid.signal transduction.other	1 (0.19%)	1	0	0	0	0	0	0
17.5.1	hormone metabolism.ethylene.synthesis-degradation	1 (0.19%)	0	0	0	0	0	0	1
17.5.2	hormone metabolism.ethylene.signal transduction	1 (0.19%)	0	0	0	1	0	0	0
17.8	hormone metabolism.salicylic acid	1 (0.19%)	1	0	0	0	0	0	0
17.8.1	hormone metabolism.salicylic acid.synthesis-degradation	1 (0.19%)	1	0	0	0	0	0	0
18	Co-factor and vitamine metabolism	1 (0.19%)	0	1	0	0	0	0	0
18.13	Co-factor and vitamine metabolism.isochorismatase	1 (0.19%)	0	1	0	0	0	0	0
20.1.7	stress.biotic.PR-proteins	1 (0.19%)	1	0	0	0	0	0	0
20.2.4	stress.abiotic.touch/wounding	1 (0.19%)	0	0	0	0	0	1	0
22	polyamine metabolism	1 (0.19%)	0	1	0	0	0	0	0
22.1	polyamine metabolism.synthesis	1 (0.19%)	0	1	0	0	0	0	0
22.1.3	polyamine metabolism.synthesis.arginine decarboxylase	1 (0.19%)	0	1	0	0	0	0	0
23	nucleotide metabolism	1 (0.19%)	0	0	1	0	0	0	0
23.2	nucleotide metabolism.degradation	1 (0.19%)	0	0	1	0	0	0	0
25	C1-metabolism	1 (0.19%)	0	0	0	1	0	0	0
25.7	C1-metabolism.GTP cyclohydrolase I	1 (0.19%)	0	0	0	1	0	0	0
26.13	misc.acid and other phosphatases	1 (0.19%)	0	1	0	0	0	0	0
26.19	misc.plastocyanin-like	1 (0.19%)	0	1	0	0	0	0	0
26.3.4	misc.gluco-, galacto- and mannosidases.endoglucanase	1 (0.19%)	0	0	0	1	0	0	0
26.8	misc.nitrilases, *nitrile lyases, berberine bridge enzymes, reticuline oxidases, troponine reductases	1 (0.19%)	0	0	0	1	0	0	0
27.1.1	RNA.processing.splicing	1 (0.19%)	0	0	0	1	0	0	0
27.1.2	RNA.processing.RNA helicase	1 (0.19%)	0	0	0	0	0	0	1
27.3.1	RNA.regulation of transcription.ABI3/VP1-related B3-domain-containing transcription factor family	1 (0.19%)	0	0	1	0	0	0	0
27.3.21	RNA.regulation of transcription.GRAS transcription factor family	1 (0.19%)	0	0	1	0	0	0	0
27.3.26	RNA.regulation of transcription.MYB-related transcription factor family	1 (0.19%)	0	0	1	0	0	0	0
27.3.35	RNA.regulation of transcription.bZIP transcription factor family	1 (0.19%)	0	1	0	0	0	0	0
27.3.50	RNA.regulation of transcription.General Transcription	1 (0.19%)	0	0	1	0	0	0	0
27.3.71	RNA.regulation of transcription.SNF7	1 (0.19%)	0	0	0	1	0	0	0
28.99	DNA.unspecified	1 (0.19%)	0	0	1	0	0	0	0
29.1	protein.aa activation	1 (0.19%)	1	0	0	0	0	0	0
29.1.18	protein.aa activation.glutamine-tRNA ligase	1 (0.19%)	1	0	0	0	0	0	0
29.3.2	protein.targeting.mitochondria	1 (0.19%)	0	0	1	0	0	0	0
29.3.4	protein.targeting.secretory pathway	1 (0.19%)	0	0	0	1	0	0	0
29.3.4.99	protein.targeting.secretory pathway.unspecified	1 (0.19%)	0	0	0	1	0	0	0
29.3.5	protein.targeting.peroxisomes	1 (0.19%)	0	0	0	0	0	1	0
3.5	minor CHO metabolism.others	1 (0.19%)	0	0	0	0	0	0	1
30.11	signalling.light	1 (0.19%)	0	0	1	0	0	0	0
30.2.17	signalling.receptor kinases.DUF 26	1 (0.19%)	0	0	0	1	0	0	0
30.2.21	signalling.receptor kinases.lysine motif	1 (0.19%)	0	0	1	0	0	0	0
30.2.24	signalling.receptor kinases.S-locus glycoprotein like	1 (0.19%)	1	0	0	0	0	0	0
30.2.3	signalling.receptor kinases.leucine rich repeat III	1 (0.19%)	0	0	1	0	0	0	0
30.5	signalling.G-proteins	1 (0.19%)	0	0	0	1	0	0	0
31.5.1	cell.cell death.plants	1 (0.19%)	0	0	0	0	0	1	0
33.3	development.squamosa promoter binding like (SPL)	1 (0.19%)	0	0	0	1	0	0	0
34.12	transport.metal	1 (0.19%)	1	0	0	0	0	0	0
34.8	transport.metabolite transporters at the envelope membrane	1 (0.19%)	0	0	0	0	0	0	1