PLAZA 3.0 Dicots : Binding Sites

MapMan terms associated with a binding site

Binding site: Matrix_236
Name: CCA1
Description: N/A

#Associated genes: 351
#Associated MapMan terms: 156

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MapMan	Description	#Associated genes	ath	bra	egr	gma	ptr	ppe	sly	vvi
27	RNA	64 (18.23%)	7	7	4	7	22	8	3	6
27.3	RNA.regulation of transcription	53 (15.10%)	5	5	4	7	18	6	3	5
30	signalling	22 (6.27%)	1	3	1	5	7	3	1	1
26	misc	16 (4.56%)	2	2	2	1	4	2	0	3
29	protein	15 (4.27%)	0	1	0	3	9	1	0	1
16	secondary metabolism	14 (3.99%)	0	1	0	0	0	2	11	0
27.3.99	RNA.regulation of transcription.unclassified	14 (3.99%)	0	1	2	4	4	1	2	0
30.2	signalling.receptor kinases	13 (3.70%)	1	2	1	3	2	2	1	1
16.1	secondary metabolism.isoprenoids	12 (3.42%)	0	0	0	0	0	1	11	0
16.1.5	secondary metabolism.isoprenoids.terpenoids	11 (3.13%)	0	0	0	0	0	0	11	0
1	PS	10 (2.85%)	0	2	0	3	0	2	0	3
17	hormone metabolism	10 (2.85%)	1	2	1	2	2	1	0	1
28	DNA	10 (2.85%)	0	2	1	1	3	1	0	2
29.4	protein.postranslational modification	10 (2.85%)	0	0	0	2	6	1	0	1
34	transport	10 (2.85%)	0	2	1	0	3	2	2	0
10	cell wall	9 (2.56%)	0	1	0	3	4	1	0	0
1.1	PS.lightreaction	8 (2.28%)	0	2	0	3	0	1	0	2
29.5.11.4.3.2	protein.degradation.ubiquitin.E3.SCF.FBOX	8 (2.28%)	0	1	0	0	2	2	0	3
30.2.11	signalling.receptor kinases.leucine rich repeat XI	8 (2.28%)	0	1	0	2	1	2	1	1
33	development	8 (2.28%)	3	0	1	3	0	0	0	1
11	lipid metabolism	7 (1.99%)	2	0	0	1	2	2	0	0
28.1	DNA.synthesis/chromatin structure	7 (1.99%)	0	1	1	1	1	1	0	2
33.99	development.unspecified	7 (1.99%)	2	0	1	3	0	0	0	1
1.1.1	PS.lightreaction.photosystem II	6 (1.71%)	0	1	0	3	0	1	0	1
1.1.1.1	PS.lightreaction.photosystem II.LHC-II	6 (1.71%)	0	1	0	3	0	1	0	1
3	minor CHO metabolism	6 (1.71%)	0	0	1	3	1	1	0	0
27.3.11	RNA.regulation of transcription.C2H2 zinc finger family	6 (1.71%)	1	0	1	0	2	1	0	1
27.3.20	RNA.regulation of transcription.G2-like transcription factor family, GARP	6 (1.71%)	1	2	0	0	2	1	0	0
3.5	minor CHO metabolism.others	6 (1.71%)	0	0	1	3	1	1	0	0
31	cell	6 (1.71%)	0	2	0	2	0	0	0	2
10.6	cell wall.degradation	5 (1.42%)	0	0	0	0	4	1	0	0
10.6.3	cell wall.degradation.pectate lyases and polygalacturonases	5 (1.42%)	0	0	0	0	4	1	0	0
17.4	hormone metabolism.cytokinin	5 (1.42%)	1	1	0	0	2	0	0	1
20	stress	5 (1.42%)	0	0	0	2	3	0	0	0
27.2	RNA.transcription	5 (1.42%)	0	1	0	0	3	1	0	0
30.5	signalling.G-proteins	5 (1.42%)	0	1	0	2	2	0	0	0
10.2	cell wall.cellulose synthesis	4 (1.14%)	0	1	0	3	0	0	0	0
11.1	lipid metabolism.FA synthesis and FA elongation	4 (1.14%)	0	0	0	1	2	1	0	0
17.2	hormone metabolism.auxin	4 (1.14%)	0	0	1	2	0	1	0	0
20.2	stress.abiotic	4 (1.14%)	0	0	0	1	3	0	0	0
26.2	misc.UDP glucosyl and glucoronyl transferases	4 (1.14%)	0	1	1	1	0	0	0	1
26.24	misc.GCN5-related N-acetyltransferase	4 (1.14%)	0	0	1	0	1	1	0	1
27.3.6	RNA.regulation of transcription.bHLH,Basic Helix-Loop-Helix family	4 (1.14%)	0	0	0	2	2	0	0	0
28.1.3	DNA.synthesis/chromatin structure.histone	4 (1.14%)	0	0	1	1	0	1	0	1
29.2.1.1.1.1.530	protein.synthesis.ribosomal protein.prokaryotic.chloroplast.30S subunit.S30A	4 (1.14%)	0	0	0	1	2	1	0	0
11.1.7	lipid metabolism.FA synthesis and FA elongation.ACP thioesterase	3 (0.85%)	0	0	0	1	2	0	0	0
17.4.2	hormone metabolism.cytokinin.signal transduction	3 (0.85%)	1	1	0	0	0	0	0	1
27.1	RNA.processing	3 (0.85%)	1	1	0	0	0	0	0	1
27.3.22	RNA.regulation of transcription.HB,Homeobox transcription factor family	3 (0.85%)	1	0	0	0	1	0	0	1
27.3.32	RNA.regulation of transcription.WRKY domain transcription factor family	3 (0.85%)	1	1	0	1	0	0	0	0
27.3.44	RNA.regulation of transcription.Chromatin Remodeling Factors	3 (0.85%)	0	0	0	0	2	1	0	0
27.4	RNA.RNA binding	3 (0.85%)	1	0	0	0	1	1	0	0
29.5	protein.degradation	3 (0.85%)	0	1	0	1	1	0	0	0
1.3	PS.calvin cycle	2 (0.57%)	0	0	0	0	0	1	0	1
1.3.3	PS.calvin cycle.phosphoglycerate kinase	2 (0.57%)	0	0	0	0	0	1	0	1
10.2.2	cell wall.cellulose synthesis.COBRA	2 (0.57%)	0	0	0	2	0	0	0	0
11.2	lipid metabolism.FA desaturation	2 (0.57%)	2	0	0	0	0	0	0	0
11.2.1	lipid metabolism.FA desaturation.desaturase	2 (0.57%)	2	0	0	0	0	0	0	0
13	amino acid metabolism	2 (0.57%)	0	0	0	0	2	0	0	0
13.2	amino acid metabolism.degradation	2 (0.57%)	0	0	0	0	2	0	0	0
13.2.3	amino acid metabolism.degradation.aspartate family	2 (0.57%)	0	0	0	0	2	0	0	0
13.2.3.5	amino acid metabolism.degradation.aspartate family.lysine	2 (0.57%)	0	0	0	0	2	0	0	0
13.2.3.5.1	mino acid metabolism.degradation.aspartate family.lysine.lysine decarboxylase	2 (0.57%)	0	0	0	0	2	0	0	0
17.2.2	hormone metabolism.auxin.signal transduction	2 (0.57%)	0	0	0	1	0	1	0	0
17.2.3	hormone metabolism.auxin.induced-regulated-responsive-activated	2 (0.57%)	0	0	1	1	0	0	0	0
17.4.1	hormone metabolism.cytokinin.synthesis-degradation	2 (0.57%)	0	0	0	0	2	0	0	0
20.2.99	stress.abiotic.unspecified	2 (0.57%)	0	0	0	0	2	0	0	0
21	redox	2 (0.57%)	0	0	0	0	2	0	0	0
24	Biodegradation of Xenobiotics	2 (0.57%)	0	0	1	0	0	1	0	0
24.2	Biodegradation of Xenobiotics.lactoylglutathione lyase	2 (0.57%)	0	0	1	0	0	1	0	0
26.4	misc.beta 1,3 glucan hydrolases	2 (0.57%)	1	0	0	0	1	0	0	0
26.4.1	misc.beta 1,3 glucan hydrolases.glucan endo-1,3-beta-glucosidase	2 (0.57%)	1	0	0	0	1	0	0	0
27.3.12	RNA.regulation of transcription.C3H zinc finger family	2 (0.57%)	0	0	0	0	1	0	0	1
27.3.3	RNA.regulation of transcription.AP2/EREBP, APETALA2/Ethylene-responsive element binding protein family	2 (0.57%)	0	1	1	0	0	0	0	0
27.3.5	RNA.regulation of transcription.ARR	2 (0.57%)	0	0	0	0	2	0	0	0
28.99	DNA.unspecified	2 (0.57%)	0	1	0	0	1	0	0	0
29.6	protein.folding	2 (0.57%)	0	0	0	0	2	0	0	0
30.2.17	signalling.receptor kinases.DUF 26	2 (0.57%)	0	0	1	1	0	0	0	0
30.3	signalling.calcium	2 (0.57%)	0	0	0	0	1	1	0	0
30.9	signalling.lipids	2 (0.57%)	0	0	0	0	2	0	0	0
31.1	cell.organisation	2 (0.57%)	0	0	0	0	0	0	0	2
31.3	cell.cycle	2 (0.57%)	0	0	0	2	0	0	0	0
31.4	cell.vesicle transport	2 (0.57%)	0	2	0	0	0	0	0	0
34.1	transport.p- and v-ATPases	2 (0.57%)	0	1	0	0	0	1	0	0
34.19	transport.Major Intrinsic Proteins	2 (0.57%)	0	0	0	0	1	0	1	0
34.19.3	transport.Major Intrinsic Proteins.NIP	2 (0.57%)	0	0	0	0	1	0	1	0
34.8	transport.metabolite transporters at the envelope membrane	2 (0.57%)	0	0	1	0	0	0	1	0
34.99	transport.misc	2 (0.57%)	0	1	0	0	0	1	0	0
1.1.2	PS.lightreaction.photosystem I	1 (0.28%)	0	1	0	0	0	0	0	0
1.1.2.1	PS.lightreaction.photosystem I.LHC-I	1 (0.28%)	0	1	0	0	0	0	0	0
1.1.40	PS.lightreaction.cyclic electron flow-chlororespiration	1 (0.28%)	0	0	0	0	0	0	0	1
2	major CHO metabolism	1 (0.28%)	0	0	0	1	0	0	0	0
4	glycolysis	1 (0.28%)	0	0	0	0	1	0	0	0
9	mitochondrial electron transport / ATP synthesis	1 (0.28%)	0	0	0	0	0	0	0	1
10.2.1	cell wall.cellulose synthesis.cellulose synthase	1 (0.28%)	0	0	0	1	0	0	0	0
11.1.13	lipid metabolism.FA synthesis and FA elongation.acyl-CoA binding protein	1 (0.28%)	0	0	0	0	0	1	0	0
11.8	lipid metabolism.exotics(steroids, squalene etc)	1 (0.28%)	0	0	0	0	0	1	0	0
11.8.10	lipid metabolism.exotics (steroids, squalene etc).phosphatidylcholinesterol O-acyltransferase	1 (0.28%)	0	0	0	0	0	1	0	0
2.2	major CHO metabolism.degradation	1 (0.28%)	0	0	0	1	0	0	0	0
4.1	glycolysis.cytosolic branch	1 (0.28%)	0	0	0	0	1	0	0	0
9.1	mitochondrial electron transport / ATP synthesis.NADH-DH	1 (0.28%)	0	0	0	0	0	0	0	1
12	N-metabolism	1 (0.28%)	0	0	0	0	0	0	0	1
12.2	N-metabolism.ammonia metabolism	1 (0.28%)	0	0	0	0	0	0	0	1
12.2.1	N-metabolism.ammonia metabolism.glutamate synthase	1 (0.28%)	0	0	0	0	0	0	0	1
15	metal handling	1 (0.28%)	1	0	0	0	0	0	0	0
15.2	metal handling.binding, chelation and storage	1 (0.28%)	1	0	0	0	0	0	0	0
16.1.1	secondary metabolism.isoprenoids.non-mevalonate pathway	1 (0.28%)	0	0	0	0	0	1	0	0
16.1.1.10	secondary metabolism.isoprenoids.non-mevalonate pathway.geranylgeranyl pyrophosphate synthase	1 (0.28%)	0	0	0	0	0	1	0	0
16.10	secondary metabolism.simple phenols	1 (0.28%)	0	0	0	0	0	1	0	0
16.8	secondary metabolism.flavonoids	1 (0.28%)	0	1	0	0	0	0	0	0
16.8.3	secondary metabolism.flavonoids.dihydroflavonols	1 (0.28%)	0	1	0	0	0	0	0	0
17.5	hormone metabolism.ethylene	1 (0.28%)	0	1	0	0	0	0	0	0
17.5.1	hormone metabolism.ethylene.synthesis-degradation	1 (0.28%)	0	1	0	0	0	0	0	0
2.2.2	major CHO metabolism.degradation.starch	1 (0.28%)	0	0	0	1	0	0	0	0
2.2.2.6	major CHO metabolism.degradation.starch.transporter	1 (0.28%)	0	0	0	1	0	0	0	0
20.1	stress.biotic	1 (0.28%)	0	0	0	1	0	0	0	0
20.2.1	stress.abiotic.heat	1 (0.28%)	0	0	0	1	0	0	0	0
21.1	redox.thioredoxin	1 (0.28%)	0	0	0	0	1	0	0	0
21.2	redox.ascorbate and glutathione	1 (0.28%)	0	0	0	0	1	0	0	0
21.2.1	redox.ascorbate and glutathione.ascorbate	1 (0.28%)	0	0	0	0	1	0	0	0
23	nucleotide metabolism	1 (0.28%)	0	0	0	1	0	0	0	0
23.4	nucleotide metabolism.phosphotransfer and pyrophosphatases	1 (0.28%)	0	0	0	1	0	0	0	0
23.4.3	nucleotide metabolism.phosphotransfer and pyrophosphatases.uridylate kinase	1 (0.28%)	0	0	0	1	0	0	0	0
26.12	misc.peroxidases	1 (0.28%)	0	1	0	0	0	0	0	0
26.13	misc.acid and other phosphatases	1 (0.28%)	0	0	0	0	1	0	0	0
26.18	misc.invertase/pectin methylesterase inhibitor family protein	1 (0.28%)	0	0	0	0	1	0	0	0
26.19	misc.plastocyanin-like	1 (0.28%)	0	0	0	0	0	1	0	0
26.28	misc.GDSL-motif lipase	1 (0.28%)	0	0	0	0	0	0	0	1
26.3	misc.gluco-, galacto- and mannosidases	1 (0.28%)	1	0	0	0	0	0	0	0
26.3.4	misc.gluco-, galacto- and mannosidases.endoglucanase	1 (0.28%)	1	0	0	0	0	0	0	0
27.3.1	RNA.regulation of transcription.ABI3/VP1-related B3-domain-containing transcription factor family	1 (0.28%)	0	0	0	0	0	0	0	1
27.3.21	RNA.regulation of transcription.GRAS transcription factor family	1 (0.28%)	0	0	0	0	0	1	0	0
27.3.25	RNA.regulation of transcription.MYB domain transcription factor family	1 (0.28%)	0	0	0	0	1	0	0	0
27.3.39	RNA.regulation of transcription.AtSR Transcription Factor family	1 (0.28%)	0	0	0	0	0	0	0	1
27.3.67	RNA.regulation of transcription.putative transcription regulator	1 (0.28%)	0	0	0	0	1	0	0	0
27.3.7	RNA.regulation of transcription.C2C2(Zn) CO-like, Constans-like zinc finger family	1 (0.28%)	1	0	0	0	0	0	0	0
27.3.8	RNA.regulation of transcription.C2C2(Zn) DOF zinc finger family	1 (0.28%)	0	0	0	0	0	1	0	0
27.3.9	RNA.regulation of transcription.C2C2(Zn) GATA transcription factor family	1 (0.28%)	0	0	0	0	0	0	1	0
28.2	DNA.repair	1 (0.28%)	0	0	0	0	1	0	0	0
29.2.1.1.1.1.14	protein.synthesis.ribosomal protein.prokaryotic.chloroplast.30S subunit.S14	1 (0.28%)	0	0	1	0	0	0	0	0
29.2.1.2.1.20	protein.synthesis.ribosomal protein.eukaryotic.40S subunit.S20	1 (0.28%)	0	0	0	1	0	0	0	0
29.4.1	protein.postranslational modification.kinase	1 (0.28%)	0	0	0	0	1	0	0	0
29.5.11	protein.degradation.ubiquitin	1 (0.28%)	0	0	0	1	0	0	0	0
29.5.11.5	protein.degradation.ubiquitin.ubiquitin protease	1 (0.28%)	0	0	0	1	0	0	0	0
29.5.2	protein.degradation.autophagy	1 (0.28%)	0	1	0	0	0	0	0	0
29.5.3	protein.degradation.cysteine protease	1 (0.28%)	0	0	0	0	1	0	0	0
30.2.23	signalling.receptor kinases.RKF3 like	1 (0.28%)	1	0	0	0	0	0	0	0
30.2.3	signalling.receptor kinases.leucine rich repeat III	1 (0.28%)	0	0	0	0	1	0	0	0
30.2.99	signalling.receptor kinases.misc	1 (0.28%)	0	1	0	0	0	0	0	0
33.30	development.multitarget	1 (0.28%)	1	0	0	0	0	0	0	0
33.30.1	development.multitarget.target of rapamycin	1 (0.28%)	1	0	0	0	0	0	0	0
34.16	transport.ABC transporters and multidrug resistance systems	1 (0.28%)	0	0	0	0	1	0	0	0
34.23	transport.hormones	1 (0.28%)	0	0	0	0	1	0	0	0
34.23.1	transport.hormones.auxin	1 (0.28%)	0	0	0	0	1	0	0	0
4.1.12	glycolysis.cytosolic branch.phosphoglycerate mutase	1 (0.28%)	0	0	0	0	1	0	0	0
9.1.2	mitochondrial electron transport / ATP synthesis.NADH-DH.localisation not clear	1 (0.28%)	0	0	0	0	0	0	0	1