MapMan terms associated with a binding site

Binding site
Matrix_229
Name
CDC5
Description
A cdc5+ homolog of a higher plant, Arabidopsis thaliana
#Associated genes
568
#Associated MapMan terms
209

Click table-header(s) to enable sorting
MapMan Description #Associated genes ath bra cme egr gma ptr ppe sly stu vvi
27RNA92 (16.20%)3140334159509
27.3RNA.regulation of transcription86 (15.14%)3130134138509
29protein53 (9.33%)06022395107
31cell30 (5.28%)22011314205
30signalling25 (4.40%)3100641406
29.4protein.postranslational modification24 (4.23%)01021242003
33development20 (3.52%)0101952002
34transport19 (3.35%)1201552003
33.99development.unspecified16 (2.82%)0101651002
27.3.3RNA.regulation of transcription.AP2/EREBP, APETALA2/Ethylene-responsive element binding protein family13 (2.29%)1400420101
29.3protein.targeting13 (2.29%)0200631001
26misc12 (2.11%)0202220103
31.1cell.organisation12 (2.11%)0101312202
29.5.11.4.2protein.degradation.ubiquitin.E3.RING11 (1.94%)2000051102
27.3.99RNA.regulation of transcription.unclassified10 (1.76%)0300510100
30.11signalling.light10 (1.76%)1000121005
9mitochondrial electron transport / ATP synthesis9 (1.58%)1000210302
10cell wall8 (1.41%)0200121101
11lipid metabolism8 (1.41%)0100421000
20stress8 (1.41%)1100212001
22polyamine metabolism8 (1.41%)1001310101
22.1polyamine metabolism.synthesis8 (1.41%)1001310101
29.5protein.degradation8 (1.41%)0000311102
31.3cell.cycle8 (1.41%)0000601001
1PS7 (1.23%)0100200103
13amino acid metabolism7 (1.23%)0001311100
17hormone metabolism7 (1.23%)1101300100
20.2stress.abiotic7 (1.23%)1000212001
22.1.3polyamine metabolism.synthesis.arginine decarboxylase7 (1.23%)1001210101
31.2cell.division7 (1.23%)1000301002
1.1PS.lightreaction6 (1.06%)0100200102
13.2amino acid metabolism.degradation6 (1.06%)0001310100
27.3.37RNA.regulation of transcription.AS2,Lateral Organ Boundaries Gene Family6 (1.06%)0100111002
27.3.40RNA.regulation of transcription.Aux/IAA family6 (1.06%)0000021003
27.3.67RNA.regulation of transcription.putative transcription regulator6 (1.06%)1000130100
29.3.1protein.targeting.nucleus6 (1.06%)0200310000
9.1mitochondrial electron transport / ATP synthesis.NADH-DH6 (1.06%)0000210201
9.1.2mitochondrial electron transport / ATP synthesis.NADH-DH.localisation not clear6 (1.06%)0000210201
4glycolysis5 (0.88%)0000210002
10.7cell wall.modification5 (0.88%)0100011101
13.2.2amino acid metabolism.degradation.glutamate family5 (0.88%)0001210100
13.2.2.3amino acid metabolism.degradation.glutamate family.arginine5 (0.88%)0001210100
17.2hormone metabolism.auxin5 (0.88%)1101200000
17.2.3hormone metabolism.auxin.induced-regulated-responsive-activated5 (0.88%)1101200000
27.1RNA.processing5 (0.88%)0101021000
27.3.11RNA.regulation of transcription.C2H2 zinc finger family5 (0.88%)0100211000
27.3.25RNA.regulation of transcription.MYB domain transcription factor family5 (0.88%)0000401000
27.3.6RNA.regulation of transcription.bHLH,Basic Helix-Loop-Helix family5 (0.88%)0000500000
29.2protein.synthesis5 (0.88%)0200210000
30.3signalling.calcium5 (0.88%)1000110101
11.8lipid metabolism.exotics(steroids, squalene etc)4 (0.70%)0100300000
11.8.1lipid metabolism.exotics (steroids, squalene etc).sphingolipids4 (0.70%)0100300000
27.3.32RNA.regulation of transcription.WRKY domain transcription factor family4 (0.70%)0000300001
28DNA4 (0.70%)0000130000
28.1DNA.synthesis/chromatin structure4 (0.70%)0000130000
29.2.3protein.synthesis.initiation4 (0.70%)0200200000
29.4.1protein.postranslational modification.kinase4 (0.70%)0000020002
29.4.1.57protein.postranslational modification.kinase.receptor like cytoplasmatic kinase VII4 (0.70%)0000020002
29.5.2protein.degradation.autophagy4 (0.70%)0000200101
30.2signalling.receptor kinases4 (0.70%)1000010200
30.4signalling.phosphinositides4 (0.70%)0000300100
34.9transport.metabolite transporters at the mitochondrial membrane4 (0.70%)0100210000
1.1.3PS.lightreaction.cytochrome b6/f3 (0.53%)0100100001
3minor CHO metabolism3 (0.53%)1000001100
20.2.1stress.abiotic.heat3 (0.53%)0000201000
20.2.99stress.abiotic.unspecified3 (0.53%)0000011001
21redox3 (0.53%)0100100100
26.10misc.cytochrome P4503 (0.53%)0102000000
26.2misc.UDP glucosyl and glucoronyl transferases3 (0.53%)0100010001
27.3.26RNA.regulation of transcription.MYB-related transcription factor family3 (0.53%)0000201000
29.3.4protein.targeting.secretory pathway3 (0.53%)0000111000
29.3.4.99protein.targeting.secretory pathway.unspecified3 (0.53%)0000111000
3.5minor CHO metabolism.others3 (0.53%)1000001100
31.3.1cell.cycle.peptidylprolyl isomerase3 (0.53%)0000201000
31.4cell.vesicle transport3 (0.53%)1100100000
33.1development.storage proteins3 (0.53%)0000201000
34.1transport.p- and v-ATPases3 (0.53%)1100100000
1.1.40PS.lightreaction.cyclic electron flow-chlororespiration2 (0.35%)0000000101
27.3.1RNA.regulation of transcription.ABI3/VP1-related B3-domain-containing transcription factor family2 (0.35%)0000100001
27.3.22RNA.regulation of transcription.HB,Homeobox transcription factor family2 (0.35%)0000110000
27.3.29RNA.regulation of transcription.TCP transcription factor family2 (0.35%)0100100000
27.3.34RNA.regulation of transcription.Orphan family2 (0.35%)0000101000
29.2.1.2.2.34protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L342 (0.35%)0101000000
29.3.2protein.targeting.mitochondria2 (0.35%)0000100001
29.3.3protein.targeting.chloroplast2 (0.35%)0000110000
29.5.11protein.degradation.ubiquitin2 (0.35%)0000101000
30.2.3signalling.receptor kinases.leucine rich repeat III2 (0.35%)1000010000
30.4.2signalling.phosphinositides.phosphatidylinositol 4-kinase2 (0.35%)0000100100
34.1.1transport.p- and v-ATPases.H+-transporting two-sector ATPase2 (0.35%)1100000000
4.1glycolysis.cytosolic branch2 (0.35%)0000100001
4.2glycolysis.plastid branch2 (0.35%)0000010001
11.9lipid metabolism.lipid degradation2 (0.35%)0000011000
21.2redox.ascorbate and glutathione2 (0.35%)0000100100
26.7misc.oxidases - copper, flavone etc2 (0.35%)0000100001
30.5signalling.G-proteins2 (0.35%)0100100000
34.11transport.NDP-sugars at the ER2 (0.35%)0000011000
34.16transport.ABC transporters and multidrug resistance systems2 (0.35%)0000010001
4.2.14glycolysis.plastid branch.pyruvate kinase (PK)2 (0.35%)0000010001
1.1.3.1PS.lightreaction.cytochrome b6/f.iron sulfur subunit1 (0.18%)0000100000
1.1.3.4PS.lightreaction.cytochrome b6/f.apocytochrome f (CYF)1 (0.18%)0100000000
1.1.5PS.lightreaction.other electron carrier (ox/red)1 (0.18%)0000100000
1.1.5.2PS.lightreaction.other electron carrier (ox/red).ferredoxin1 (0.18%)0000100000
1.3PS.calvin cycle1 (0.18%)0000000001
1.3.13PS.calvin cycle.rubisco interacting1 (0.18%)0000000001
2major CHO metabolism1 (0.18%)0000100000
10.1.3cell wall.precursor synthesis.AXS1 (0.18%)0000100000
10.8.1cell wall.pectin*esterases.PME1 (0.18%)0100000000
2.2major CHO metabolism.degradation1 (0.18%)0000100000
10.1cell wall.precursor synthesis1 (0.18%)0000100000
10.5cell wall.cell wall proteins1 (0.18%)0000010000
10.8cell wall.pectin*esterases1 (0.18%)0100000000
11.1lipid metabolism.FA synthesis and FA elongation1 (0.18%)0000010000
11.1.10lipid metabolism.FA synthesis and FA elongation.beta ketoacyl CoA synthase1 (0.18%)0000010000
11.10lipid metabolism.glycolipid synthesis1 (0.18%)0000100000
11.10.2lipid metabolism.glycolipid synthesis.DGDG synthase1 (0.18%)0000100000
11.9.2lipid metabolism.lipid degradation.lipases1 (0.18%)0000010000
11.9.2.1lipid metabolism.lipid degradation.lipases.triacylglycerol lipase1 (0.18%)0000010000
11.9.3lipid metabolism.lipid degradation.lysophospholipases1 (0.18%)0000001000
11.9.3.2lipid metabolism.lipid degradation.lysophospholipases.carboxylesterase1 (0.18%)0000001000
12.2N-metabolism.ammonia metabolism1 (0.18%)0000100000
12.2.1N-metabolism.ammonia metabolism.glutamate synthase1 (0.18%)0000100000
13.1amino acid metabolism.synthesis1 (0.18%)0000001000
13.1.3amino acid metabolism.synthesis.aspartate family1 (0.18%)0000001000
13.1.3.1amino acid metabolism.synthesis.aspartate family.asparagine1 (0.18%)0000001000
13.2.4amino acid metabolism.degradation.branched chain group1 (0.18%)0000100000
13.2.4.1amino acid metabolism.degradation.branched chain group.shared1 (0.18%)0000100000
15.2metal handling.binding, chelation and storage1 (0.18%)0000100000
17.3hormone metabolism.brassinosteroid1 (0.18%)0000100000
17.3.1hormone metabolism.brassinosteroid.synthesis-degradation1 (0.18%)0000100000
17.3.1.2hormone metabolism.brassinosteroid.synthesis-degradation.sterols1 (0.18%)0000100000
17.3.1.2.2hormone metabolism.brassinosteroid.synthesis-degradation.sterols.SMT21 (0.18%)0000100000
17.7hormone metabolism.jasmonate1 (0.18%)0000000100
17.7.1hormone metabolism.jasmonate.synthesis-degradation1 (0.18%)0000000100
17.7.1.5hormone metabolism.jasmonate.synthesis-degradation.12-Oxo-PDA-reductase1 (0.18%)0000000100
19.16tetrapyrrole synthesis.chlorophyll b synthase1 (0.18%)0000010000
2.2.2major CHO metabolism.degradation.starch1 (0.18%)0000100000
2.2.2.1major CHO metabolism.degradation.starch.starch cleavage1 (0.18%)0000100000
2.2.2.1.2major CHO metabolism.degradation.starch.starch cleavage.beta amylase1 (0.18%)0000100000
12N-metabolism1 (0.18%)0000100000
15metal handling1 (0.18%)0000100000
19tetrapyrrole synthesis1 (0.18%)0000010000
20.1stress.biotic1 (0.18%)0100000000
20.2.3stress.abiotic.drought/salt1 (0.18%)1000000000
21.2.1redox.ascorbate and glutathione.ascorbate1 (0.18%)0000000100
21.2.1.2redox.ascorbate and glutathione.ascorbate.GDP-L-galactose-hexose-1-phosphate guanyltransferase1 (0.18%)0000000100
21.4redox.glutaredoxins1 (0.18%)0100000000
22.1.2polyamine metabolism.synthesis.SAM decarboxylase1 (0.18%)0000100000
23nucleotide metabolism1 (0.18%)0000100000
23.2nucleotide metabolism.degradation1 (0.18%)0000100000
26.13misc.acid and other phosphatases1 (0.18%)0000000100
26.22misc.short chain dehydrogenase/reductase (SDR)1 (0.18%)0000000001
26.23misc.rhodanese1 (0.18%)0000010000
26.8misc.nitrilases, *nitrile lyases, berberine bridge enzymes, reticuline oxidases, troponine reductases1 (0.18%)0000100000
27.1.1RNA.processing.splicing1 (0.18%)0000010000
27.1.2RNA.processing.RNA helicase1 (0.18%)0001000000
27.3.15RNA.regulation of transcription.CCAAT box binding factor family, HAP31 (0.18%)1000000000
27.3.20RNA.regulation of transcription.G2-like transcription factor family, GARP1 (0.18%)0000001000
27.3.21RNA.regulation of transcription.GRAS transcription factor family1 (0.18%)0001000000
27.3.23RNA.regulation of transcription.HSF,Heat-shock transcription factor family1 (0.18%)0000010000
27.3.30RNA.regulation of transcription.Trihelix, Triple-Helix transcription factor family1 (0.18%)0000000100
27.3.42RNA.regulation of transcription.Bromodomain proteins1 (0.18%)0000100000
27.3.44RNA.regulation of transcription.Chromatin Remodeling Factors1 (0.18%)0000010000
27.3.46RNA.regulation of transcription.DNA methyltransferases1 (0.18%)0100000000
27.3.52RNA.regulation of transcription.Global transcription factor group1 (0.18%)0100000000
27.3.63RNA.regulation of transcription.PHD finger transcription factor1 (0.18%)0000000001
27.3.66RNA.regulation of transcription.Psudo ARR transcription factor family1 (0.18%)0000100000
27.3.68RNA.regulation of transcription.PWWP domain protein1 (0.18%)0000000100
27.3.71RNA.regulation of transcription.SNF71 (0.18%)0100000000
27.3.8RNA.regulation of transcription.C2C2(Zn) DOF zinc finger family1 (0.18%)0000001000
27.3.9RNA.regulation of transcription.C2C2(Zn) GATA transcription factor family1 (0.18%)0000100000
29.1.30protein.aa activation.pseudouridylate synthase1 (0.18%)0000001000
29.2.1.1.1.1.4protein.synthesis.ribosomal protein.prokaryotic.chloroplast.30S subunit.S41 (0.18%)0000010000
29.2.1.1.1.1.7protein.synthesis.ribosomal protein.prokaryotic.chloroplast.30S subunit.S71 (0.18%)0000000100
29.2.1.1.1.2.20protein.synthesis.ribosomal protein.prokaryotic.chloroplast.50S subunit.L201 (0.18%)0100000000
29.2.1.2.1.13protein.synthesis.ribosomal protein.eukaryotic.40S subunit.S131 (0.18%)0000000001
29.2.1.2.1.18protein.synthesis.ribosomal protein.eukaryotic.40S subunit.S181 (0.18%)0000010000
29.2.1.2.1.4protein.synthesis.ribosomal protein.eukaryotic.40S subunit.S41 (0.18%)0000100000
29.2.1.2.2.523protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L23A1 (0.18%)0000100000
29.2.1.2.2.527protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L27A1 (0.18%)0000000001
29.2.4protein.synthesis.elongation1 (0.18%)0000010000
29.5.11.4.3.2protein.degradation.ubiquitin.E3.SCF.FBOX1 (0.18%)0100000000
29.5.3protein.degradation.cysteine protease1 (0.18%)0000000001
29.5.5protein.degradation.serine protease1 (0.18%)0000010000
3.5.1minor CHO metabolism.others.Xylose isomerase1 (0.18%)0000001000
30.2.17signalling.receptor kinases.DUF 261 (0.18%)0000000100
30.2.18signalling.receptor kinases.extensin1 (0.18%)0000000100
31.2.5cell.division.plastid1 (0.18%)0000001000
34.1.1.4transport.p- and v-ATPases.H+-transporting two-sector ATPase.subunit E1 (0.18%)1000000000
34.19.2transport.Major Intrinsic Proteins.TIP1 (0.18%)0000000001
4.1.13glycolysis.cytosolic branch.enolase1 (0.18%)0000100000
4.1.8glycolysis.cytosolic branch.glyceraldehyde 3-phosphate dehydrogenase (GAP-DH)1 (0.18%)0000000001
4.3glycolysis.unclear/dually targeted1 (0.18%)0000100000
4.3.12glycolysis.unclear/dually targeted.phosphoglycerate mutase1 (0.18%)0000100000
9.5mitochondrial electron transport / ATP synthesis.cytochrome c reductase1 (0.18%)1000000000
9.6mitochondrial electron transport / ATP synthesis.cytochrome c1 (0.18%)0000000100
9.7mitochondrial electron transport / ATP synthesis.cytochrome c oxidase1 (0.18%)0000000001
27.4RNA.RNA binding1 (0.18%)0001000000
29.1protein.aa activation1 (0.18%)0000001000
29.6protein.folding1 (0.18%)0000000001
29.8protein.assembly and cofactor ligation1 (0.18%)0100000000
33.3development.squamosa promoter binding like (SPL)1 (0.18%)0000100000
34.12transport.metal1 (0.18%)0001000000
34.15transport.potassium1 (0.18%)0000010000
34.18transport.unspecified anions1 (0.18%)0000000001
34.19transport.Major Intrinsic Proteins1 (0.18%)0000000001
34.2transport.sugars1 (0.18%)0000100000
34.6transport.sulphate1 (0.18%)0000010000
34.7transport.phosphate1 (0.18%)0000001000
34.99transport.misc1 (0.18%)0000100000