PLAZA 3.0 Dicots : Binding Sites

MapMan terms associated with a binding site

Binding site: Matrix_172
Name: BES1
Description: A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana

#Associated genes: 557
#Associated MapMan terms: 170

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MapMan	Description	#Associated genes	ath	bra	egr	gma	ptr	ppe	sly	vvi
27	RNA	109 (19.57%)	6	10	11	29	24	13	8	8
27.3	RNA.regulation of transcription	88 (15.80%)	5	5	11	25	19	11	5	7
29	protein	51 (9.16%)	6	5	3	10	4	10	4	9
1	PS	38 (6.82%)	3	7	2	7	6	3	6	4
1.1	PS.lightreaction	26 (4.67%)	1	5	0	4	3	3	6	4
29.4	protein.postranslational modification	18 (3.23%)	3	1	2	3	0	3	1	5
33	development	18 (3.23%)	0	1	0	6	3	2	2	4
29.5	protein.degradation	17 (3.05%)	1	2	1	2	4	4	1	2
27.3.6	RNA.regulation of transcription.bHLH,Basic Helix-Loop-Helix family	16 (2.87%)	1	1	1	4	3	3	3	0
34	transport	14 (2.51%)	2	0	0	3	4	0	2	3
1.1.1	PS.lightreaction.photosystem II	13 (2.33%)	0	2	0	2	2	2	2	3
33.99	development.unspecified	13 (2.33%)	0	1	0	5	2	1	2	2
1.3	PS.calvin cycle	12 (2.15%)	2	2	2	3	3	0	0	0
3	minor CHO metabolism	12 (2.15%)	0	1	1	1	3	2	1	3
17	hormone metabolism	12 (2.15%)	0	0	0	3	4	2	1	2
26	misc	12 (2.15%)	1	0	1	5	3	1	0	1
30	signalling	12 (2.15%)	0	0	0	1	7	2	0	2
1.3.2	PS.calvin cycle.rubisco small subunit	11 (1.97%)	2	2	1	3	3	0	0	0
8	TCA / org transformation	9 (1.62%)	1	1	1	1	1	1	1	2
27.3.32	RNA.regulation of transcription.WRKY domain transcription factor family	9 (1.62%)	0	0	0	3	4	1	0	1
27.4	RNA.RNA binding	9 (1.62%)	1	2	0	1	2	1	2	0
31	cell	9 (1.62%)	1	0	1	3	2	0	0	2
1.1.1.1	PS.lightreaction.photosystem II.LHC-II	8 (1.44%)	0	0	0	0	2	2	2	2
20	stress	8 (1.44%)	1	0	0	2	3	1	1	0
27.1	RNA.processing	8 (1.44%)	1	0	0	3	2	1	1	0
27.1.2	RNA.processing.RNA helicase	8 (1.44%)	1	0	0	3	2	1	1	0
27.3.7	RNA.regulation of transcription.C2C2(Zn) CO-like, Constans-like zinc finger family	8 (1.44%)	1	2	0	2	0	1	1	1
27.3.22	RNA.regulation of transcription.HB,Homeobox transcription factor family	7 (1.26%)	0	1	0	3	2	0	0	1
27.3.29	RNA.regulation of transcription.TCP transcription factor family	7 (1.26%)	1	0	0	4	1	1	0	0
29.3	protein.targeting	7 (1.26%)	2	0	0	3	0	1	1	0
27.3.99	RNA.regulation of transcription.unclassified	6 (1.08%)	1	1	2	1	1	0	0	0
29.3.3	protein.targeting.chloroplast	6 (1.08%)	1	0	0	3	0	1	1	0
3.2	minor CHO metabolism.trehalose	6 (1.08%)	0	0	0	0	2	2	1	1
3.2.3	minor CHO metabolism.trehalose.potential TPS/TPP	6 (1.08%)	0	0	0	0	2	2	1	1
8.1	TCA / org transformation.TCA	6 (1.08%)	1	1	1	1	1	0	0	1
31.1	cell.organisation	6 (1.08%)	1	0	1	1	1	0	0	2
8.1.3	TCA / org transformation.TCA.aconitase	6 (1.08%)	1	1	1	1	1	0	0	1
1.1.1.2	PS.lightreaction.photosystem II.PSII polypeptide subunits	5 (0.90%)	0	2	0	2	0	0	0	1
1.1.4	PS.lightreaction.ATP synthase	5 (0.90%)	1	3	0	0	1	0	0	0
1.1.4.4	PS.lightreaction.ATP synthase.gamma chain	5 (0.90%)	1	3	0	0	1	0	0	0
6	gluconeogenesis / glyoxylate cycle	5 (0.90%)	0	0	0	3	2	0	0	0
6.3	gluconeogenesis / glyoxylate cycle.Malate DH	5 (0.90%)	0	0	0	3	2	0	0	0
17.5	hormone metabolism.ethylene	5 (0.90%)	0	0	0	1	2	1	0	1
17.5.1	hormone metabolism.ethylene.synthesis-degradation	5 (0.90%)	0	0	0	1	2	1	0	1
20.1	stress.biotic	5 (0.90%)	0	0	0	2	2	1	0	0
26.2	misc.UDP glucosyl and glucoronyl transferases	5 (0.90%)	0	0	1	0	2	1	0	1
27.2	RNA.transcription	5 (0.90%)	0	3	0	0	1	0	0	1
27.3.11	RNA.regulation of transcription.C2H2 zinc finger family	5 (0.90%)	1	0	1	1	1	0	0	1
29.2	protein.synthesis	5 (0.90%)	0	1	0	2	0	1	0	1
33.1	development.storage proteins	5 (0.90%)	0	0	0	1	1	1	0	2
34.19	transport.Major Intrinsic Proteins	5 (0.90%)	1	0	0	1	2	0	1	0
27.3.25	RNA.regulation of transcription.MYB domain transcription factor family	4 (0.72%)	0	0	0	3	1	0	0	0
28	DNA	4 (0.72%)	0	0	0	2	1	1	0	0
29.2.4	protein.synthesis.elongation	4 (0.72%)	0	0	0	2	0	1	0	1
29.4.1	protein.postranslational modification.kinase	4 (0.72%)	0	0	2	0	0	1	0	1
29.4.1.57	protein.postranslational modification.kinase.receptor like cytoplasmatic kinase VII	4 (0.72%)	0	0	2	0	0	1	0	1
29.5.11	protein.degradation.ubiquitin	4 (0.72%)	0	0	0	1	1	1	0	1
29.5.11.4.2	protein.degradation.ubiquitin.E3.RING	4 (0.72%)	0	0	0	0	2	0	0	2
29.5.7	protein.degradation.metalloprotease	4 (0.72%)	0	1	0	1	0	1	1	0
29.6	protein.folding	4 (0.72%)	0	1	0	0	0	1	1	1
30.2	signalling.receptor kinases	4 (0.72%)	0	0	0	1	3	0	0	0
1.1.3	PS.lightreaction.cytochrome b6/f	3 (0.54%)	0	0	0	2	0	0	1	0
1.1.3.3	PS.lightreaction.cytochrome b6/f.cytochrome b6 (CYB6)	3 (0.54%)	0	0	0	2	0	0	1	0
1.1.40	PS.lightreaction.cyclic electron flow-chlororespiration	3 (0.54%)	0	0	0	0	0	1	2	0
2	major CHO metabolism	3 (0.54%)	0	0	0	0	1	1	0	1
13	amino acid metabolism	3 (0.54%)	1	0	0	1	0	0	0	1
13.1	amino acid metabolism.synthesis	3 (0.54%)	1	0	0	1	0	0	0	1
17.1	hormone metabolism.abscisic acid	3 (0.54%)	0	0	0	2	0	1	0	0
17.1.2	hormone metabolism.abscisic acid.signal transduction	3 (0.54%)	0	0	0	2	0	1	0	0
17.2	hormone metabolism.auxin	3 (0.54%)	0	0	0	0	1	0	1	1
17.2.2	hormone metabolism.auxin.signal transduction	3 (0.54%)	0	0	0	0	1	0	1	1
26.3.5	misc.gluco-, galacto- and mannosidases.glycosyl hydrolase family 5	3 (0.54%)	0	0	0	2	1	0	0	0
27.3.15	RNA.regulation of transcription.CCAAT box binding factor family, HAP3	3 (0.54%)	0	0	1	0	0	1	1	0
27.3.35	RNA.regulation of transcription.bZIP transcription factor family	3 (0.54%)	0	0	0	2	0	1	0	0
29.5.11.4.3.2	protein.degradation.ubiquitin.E3.SCF.FBOX	3 (0.54%)	0	1	0	0	1	1	0	0
3.2.1	minor CHO metabolism.trehalose.TPS	3 (0.54%)	0	0	0	0	1	1	1	0
3.5	minor CHO metabolism.others	3 (0.54%)	0	1	0	0	1	0	0	1
8.3	TCA / org transformation.carbonic anhydrases	3 (0.54%)	0	0	0	0	0	1	1	1
19	tetrapyrrole synthesis	3 (0.54%)	0	0	0	2	0	0	0	1
19.7	tetrapyrrole synthesis.uroporphyrinogen decarboxylase	3 (0.54%)	0	0	0	2	0	0	0	1
20.2	stress.abiotic	3 (0.54%)	1	0	0	0	1	0	1	0
21	redox	3 (0.54%)	0	0	0	2	0	1	0	0
21.5	redox.peroxiredoxin	3 (0.54%)	0	0	0	2	0	1	0	0
26.3	misc.gluco-, galacto- and mannosidases	3 (0.54%)	0	0	0	2	1	0	0	0
28.1	DNA.synthesis/chromatin structure	3 (0.54%)	0	0	0	1	1	1	0	0
30.2.11	signalling.receptor kinases.leucine rich repeat XI	3 (0.54%)	0	0	0	1	2	0	0	0
30.3	signalling.calcium	3 (0.54%)	0	0	0	0	1	1	0	1
30.5	signalling.G-proteins	3 (0.54%)	0	0	0	0	3	0	0	0
34.19.1	transport.Major Intrinsic Proteins.PIP	3 (0.54%)	1	0	0	1	0	0	1	0
34.2	transport.sugars	3 (0.54%)	1	0	0	1	0	0	0	1
1.1.2	PS.lightreaction.photosystem I	2 (0.36%)	0	0	0	0	0	0	1	1
1.1.2.2	PS.lightreaction.photosystem I.PSI polypeptide subunits	2 (0.36%)	0	0	0	0	0	0	1	1
13.1.6	amino acid metabolism.synthesis.aromatic aa	2 (0.36%)	1	0	0	0	0	0	0	1
13.1.6.1	amino acid metabolism.synthesis.aromatic aa.chorismate	2 (0.36%)	1	0	0	0	0	0	0	1
13.1.6.1.5	amino acid metabolism.synthesis.aromatic aa.chorismate.shikimate kinase	2 (0.36%)	1	0	0	0	0	0	0	1
2.2	major CHO metabolism.degradation	2 (0.36%)	0	0	0	0	0	1	0	1
2.2.2	major CHO metabolism.degradation.starch	2 (0.36%)	0	0	0	0	0	1	0	1
2.2.2.1	major CHO metabolism.degradation.starch.starch cleavage	2 (0.36%)	0	0	0	0	0	1	0	1
2.2.2.1.2	major CHO metabolism.degradation.starch.starch cleavage.beta amylase	2 (0.36%)	0	0	0	0	0	1	0	1
3.8	minor CHO metabolism.galactose	2 (0.36%)	0	0	1	0	0	0	0	1
3.8.2	minor CHO metabolism.galactose.alpha-galactosidases	2 (0.36%)	0	0	1	0	0	0	0	1
11	lipid metabolism	2 (0.36%)	0	0	0	2	0	0	0	0
16	secondary metabolism	2 (0.36%)	0	0	0	0	0	0	0	2
16.1	secondary metabolism.isoprenoids	2 (0.36%)	0	0	0	0	0	0	0	2
18	Co-factor and vitamine metabolism	2 (0.36%)	0	0	0	0	1	0	0	1
18.6	Co-factor and vitamine metabolism.biotin	2 (0.36%)	0	0	0	0	1	0	0	1
20.2.2	stress.abiotic.cold	2 (0.36%)	0	0	0	0	1	0	1	0
27.3.26	RNA.regulation of transcription.MYB-related transcription factor family	2 (0.36%)	0	0	0	0	2	0	0	0
27.3.3	RNA.regulation of transcription.AP2/EREBP, APETALA2/Ethylene-responsive element binding protein family	2 (0.36%)	0	0	0	1	1	0	0	0
27.3.30	RNA.regulation of transcription.Trihelix, Triple-Helix transcription factor family	2 (0.36%)	0	0	0	0	1	0	0	1
27.3.52	RNA.regulation of transcription.Global transcription factor group	2 (0.36%)	0	0	1	0	0	1	0	0
27.3.54	RNA.regulation of transcription.Histone acetyltransferases	2 (0.36%)	0	0	1	0	0	1	0	0
27.3.67	RNA.regulation of transcription.putative transcription regulator	2 (0.36%)	0	0	1	0	0	0	0	1
29.5.5	protein.degradation.serine protease	2 (0.36%)	0	0	0	0	1	1	0	0
30.11	signalling.light	2 (0.36%)	0	0	0	0	0	1	0	1
31.2	cell.division	2 (0.36%)	0	0	0	2	0	0	0	0
34.19.2	transport.Major Intrinsic Proteins.TIP	2 (0.36%)	0	0	0	0	2	0	0	0
34.3	transport.amino acids	2 (0.36%)	0	0	0	0	1	0	0	1
34.99	transport.misc	2 (0.36%)	0	0	0	1	0	0	0	1
1.3.6	PS.calvin cycle.aldolase	1 (0.18%)	0	0	1	0	0	0	0	0
11.1.8	lipid metabolism.FA synthesis and FA elongation.acyl coa ligase	1 (0.18%)	0	0	0	1	0	0	0	0
11.5.2	lipid metabolism.glyceral metabolism.Glycerol-3-phosphate dehydrogenase (NAD+)	1 (0.18%)	0	0	0	1	0	0	0	0
13.1.3	amino acid metabolism.synthesis.aspartate family	1 (0.18%)	0	0	0	1	0	0	0	0
13.1.3.5	amino acid metabolism.synthesis.aspartate family.lysine	1 (0.18%)	0	0	0	1	0	0	0	0
13.1.3.5.2	amino acid metabolism.synthesis.aspartate family.lysine.dihydrodipicolinate reductase	1 (0.18%)	0	0	0	1	0	0	0	0
16.1.1	secondary metabolism.isoprenoids.non-mevalonate pathway	1 (0.18%)	0	0	0	0	0	0	0	1
16.1.1.1	secondary metabolism.isoprenoids.non-mevalonate pathway.DXS	1 (0.18%)	0	0	0	0	0	0	0	1
16.1.5	secondary metabolism.isoprenoids.terpenoids	1 (0.18%)	0	0	0	0	0	0	0	1
16.5.1.1.3.3	secondary metabolism.sulfur-containing.glucosinolates.synthesis.indole.indole-3-methyl-desulfoglucosinolate sulfotransferase	1 (0.18%)	1	0	0	0	0	0	0	0
17.6.2	hormone metabolism.gibberelin.signal transduction	1 (0.18%)	0	0	0	0	1	0	0	0
2.1	major CHO metabolism.synthesis	1 (0.18%)	0	0	0	0	1	0	0	0
2.1.2	major CHO metabolism.synthesis.starch	1 (0.18%)	0	0	0	0	1	0	0	0
22.1.2	polyamine metabolism.synthesis.SAM decarboxylase	1 (0.18%)	0	1	0	0	0	0	0	0
26.4.1	misc.beta 1,3 glucan hydrolases.glucan endo-1,3-beta-glucosidase	1 (0.18%)	0	0	0	1	0	0	0	0
27.3.12	RNA.regulation of transcription.C3H zinc finger family	1 (0.18%)	0	0	0	0	1	0	0	0
27.3.20	RNA.regulation of transcription.G2-like transcription factor family, GARP	1 (0.18%)	0	0	0	1	0	0	0	0
27.3.21	RNA.regulation of transcription.GRAS transcription factor family	1 (0.18%)	0	0	0	0	0	0	0	1
27.3.24	RNA.regulation of transcription.MADS box transcription factor family	1 (0.18%)	0	0	1	0	0	0	0	0
27.3.37	RNA.regulation of transcription.AS2,Lateral Organ Boundaries Gene Family	1 (0.18%)	0	0	1	0	0	0	0	0
27.3.40	RNA.regulation of transcription.Aux/IAA family	1 (0.18%)	0	0	0	0	1	0	0	0
27.3.5	RNA.regulation of transcription.ARR	1 (0.18%)	0	0	0	0	0	1	0	0
27.3.9	RNA.regulation of transcription.C2C2(Zn) GATA transcription factor family	1 (0.18%)	0	0	1	0	0	0	0	0
29.2.1.1.1.1.18	protein.synthesis.ribosomal protein.prokaryotic.chloroplast.30S subunit.S18	1 (0.18%)	0	0	0	0	0	0	1	0
29.2.1.1.1.2.33	protein.synthesis.ribosomal protein.prokaryotic.chloroplast.50S subunit.L33	1 (0.18%)	0	0	0	0	0	0	1	0
29.2.1.1.2.1.14	protein.synthesis.ribosomal protein.prokaryotic.mitochondrion.30S subunit.S14	1 (0.18%)	0	0	0	0	0	0	1	0
29.2.1.2.2.5	protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L5	1 (0.18%)	0	0	0	1	0	0	0	0
29.2.5	protein.synthesis.release	1 (0.18%)	0	1	0	0	0	0	0	0
29.3.2	protein.targeting.mitochondria	1 (0.18%)	1	0	0	0	0	0	0	0
29.5.3	protein.degradation.cysteine protease	1 (0.18%)	0	0	0	0	1	0	0	0
3.7	minor CHO metabolism.sugar kinases	1 (0.18%)	0	0	0	1	0	0	0	0
9	mitochondrial electron transport / ATP synthesis	1 (0.18%)	1	0	0	0	0	0	0	0
9.5	mitochondrial electron transport / ATP synthesis.cytochrome c reductase	1 (0.18%)	1	0	0	0	0	0	0	0
10	cell wall	1 (0.18%)	0	0	0	1	0	0	0	0
10.7	cell wall.modification	1 (0.18%)	0	0	0	1	0	0	0	0
11.1	lipid metabolism.FA synthesis and FA elongation	1 (0.18%)	0	0	0	1	0	0	0	0
11.5	lipid metabolism.glyceral metabolism	1 (0.18%)	0	0	0	1	0	0	0	0
17.6	hormone metabolism.gibberelin	1 (0.18%)	0	0	0	0	1	0	0	0
22	polyamine metabolism	1 (0.18%)	0	1	0	0	0	0	0	0
22.1	polyamine metabolism.synthesis	1 (0.18%)	0	1	0	0	0	0	0	0
25	C1-metabolism	1 (0.18%)	0	0	0	1	0	0	0	0
26.17	misc.dynamin	1 (0.18%)	0	0	0	1	0	0	0	0
26.25	misc.sulfotransferase	1 (0.18%)	1	0	0	0	0	0	0	0
26.4	misc.beta 1,3 glucan hydrolases	1 (0.18%)	0	0	0	1	0	0	0	0
26.8	misc.nitrilases, *nitrile lyases, berberine bridge enzymes, reticuline oxidases, troponine reductases	1 (0.18%)	0	0	0	1	0	0	0	0
28.99	DNA.unspecified	1 (0.18%)	0	0	0	1	0	0	0	0
30.2.17	signalling.receptor kinases.DUF 26	1 (0.18%)	0	0	0	0	1	0	0	0
31.5	cell.cell death	1 (0.18%)	0	0	0	0	1	0	0	0
31.5.1	cell.cell death.plants	1 (0.18%)	0	0	0	0	1	0	0	0
34.8	transport.metabolite transporters at the envelope membrane	1 (0.18%)	0	0	0	0	0	0	1	0
34.9	transport.metabolite transporters at the mitochondrial membrane	1 (0.18%)	0	0	0	0	1	0	0	0