PLAZA 3.0 Dicots : Binding Sites

Binding sites with simlar sequences

Binding site: Motif_90
Name: GT1MOTIFPSRBCS
Description: GT-1 motif; Consensus sequence of rbcS BOX II, III, II', III'; GT-1 box; 5' upstream region (-151) of pea (P.s.) rbcS gene; binding with trans factor GT-1; See GT1CORE

Sequence: KWGTGRWAAWRW
Positional Weight Matrix

Minimum similarity percentage

Binding site	Name	Description	Similarity
Matrix_148	WRKY60	Not Available	59.12%
Motif_165	AP3SV40	AP-3 binding site consensus sequence in enhancer regions of SV40, MMTV, MLV, IL2	58.33%
Matrix_314	WRKY65; WRKY14; WRKY35; WRKY69; WRKY16; ATWRKY52	Not Available	57.02%
Matrix_249	WRKY11	Not Available	56.77%
Matrix_131	HDG12; EDT1; GL2; HDG8	Not Available	56.76%
Matrix_500	WRKY43	Not Available	56.48%
Motif_16	-300ELEMENT	Present upstream of the promoter from the B-hordein gene of barley and the alpha-gliadin, gamma-gliadin, and low molecular weight glutenin genes of wheat; See S000001 -300CORE; See S000002 -300MOTIF	55.93%
Matrix_382	AT3G04850	Not Available	55.84%
Matrix_316	WRKY15; WRKY39; WRKY7; WRKY74	Not Available	55.83%
Matrix_357	WRKY61; WRKY6; WRKY9; WRKY36; WRKY47; WRKY42; WRKY31; WRKY72	Not Available	55.68%
Motif_178	MRNA3ENDTAH3	Cis element in 3' end region of wheat histone H3 mRNA; 3' end formation; Also found in histone genes of other plants, yeast	55.28%
Motif_523	GATA-2; GATA-4; GATA-3; GATA-1	Arabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristics	55.28%
Matrix_308	INO	Not Available	54.77%
Matrix_52	ZAT18	Not Available	54.56%
Matrix_444	AT1G19485; AT4G17950	Not Available	54.47%
Matrix_341	HMGA	Not Available	54.30%
Matrix_367	REM1	Not Available	54.23%
Motif_508	CEREGLUBOX1PSLEGA	cereal glutenin box in pea legumin gene (legA); sequence homologous to the cereal glutenin gene control element (-300 element)	54.17%
Motif_59	CEREGLUBOX3PSLEGA	cereal glutenin box in pea (P.s.) legumin gene (legA); sequence homologous to the cereal glutenin gene control elements	54.17%
Motif_612	RBCSBOX2PS	rbcS box II; 5' upstream region (-151) of pea rbcS gene; Binding with trans factor GT-1; one of GT-1 boxes; GT-1 may act as a molecular switch modulated by calcium-dependent phosphorylation and dephosphorylation in response to light signals	54.17%
Matrix_453	EIL3	Not Available	53.98%
Matrix_427	ZAT14	Not Available	53.82%
Matrix_12	EIN3; EIL2	Not Available	53.76%
Matrix_240	AT4G29000	Not Available	53.37%
Matrix_54	AHL20	Not Available	53.34%
Matrix_99	DOF4.7	Not Available	53.25%
Matrix_32	AHL25	Not Available	53.22%
Matrix_212	ATHB-12	Not Available	53.20%
Matrix_351	HAT9; ATHB-4; ATHB2; HAT22; HAT14	Not Available	53.19%
Matrix_25	AP3	Not Available	52.90%
Matrix_220	WRKY18	Not Available	52.88%
Matrix_36	RAV1_1	RAV1, a novel DNA-binding protein, binds to bipartite recognition sequence through two distinct DNA-binding domains uniquely found in higher plants	52.63%
Matrix_397	GT2L	Not Available	52.52%
Motif_556	INTRONUPPER	5' exon-intron splice junctions of plant introns; Plant intron upper sequence; Consensus sequence for plant introns	52.44%
Matrix_412	GL1	Not Available	52.41%
Matrix_508	APL; AT3G12730; AT3G24120; UNE16	Not Available	52.08%
Matrix_168	AHL25	Not Available	52.04%
Matrix_380	ATMYR1	Not Available	51.97%
Matrix_125	AHL12	Not Available	51.91%
Matrix_302	HAT1; HAT2	Not Available	51.87%
Matrix_290	AP2	Not Available	51.80%
Matrix_71	ATHB7	Not Available	51.78%
Motif_332	SV40COREENHAN	SV40 core enhancer; Similar sequences found in rbcS genes	51.76%
Matrix_208	AP1	Not Available	51.76%
Matrix_309	FLC	Not Available	51.71%
Matrix_470	WRKY18	Not Available	51.71%
Matrix_93	YAB5	Not Available	51.69%
Motif_497	ARE1	ARE (antioxidant response element); antioxidant response element of rat glutathione S-transferase Ya subunit, and rat NAD(P)H:quinone reductase genes	51.58%
Matrix_201	AT1G74840	Not Available	51.56%
Matrix_74	LFY	Not Available	51.54%
Matrix_162	AtPHR1	Not Available	51.36%
Matrix_489	RAV1	Not Available	51.32%
Matrix_199	AT1G69170; SPL9; SPL15; SPL13A; SPL13B	Not Available	51.12%
Motif_442	GT2OSPHYA	GT-2 (a rice nuclear protein) binding site in a rice phyA promoter; phyA gene are transcriptionaly repressed in response to light; One of GT elements;The HMG-1/Y protein PF1 stimulates binding of the GT-2 to PHYA gene promoter	51.12%
Motif_491	GT-1	Molecular dissection of GT-1 from Arabidopsis	51.12%
Motif_651	E2Fc; E2Fd; E2Fe; E2Fa	The E2F family of transcription factors from Arabidopsis thaliana. Novel and conserved components of the retinoblastoma/E2F pathway in plants	51.12%
Motif_175	BOX2PVCHS15	Box 2 of bean (P.v.) chs15 promoter; SBF-1 binding site	51.12%
Motif_403	WINPSTPIIIK	Binding site of wound-inducible nuclear protein from wounded tomato leaves; Found in the promoter region of a protease inhibitor IIK gene from potato	51.12%
Matrix_423	AT3G04030	Not Available	51.08%
Matrix_202	WRKY71; WRKY28; WRKY8	Not Available	51.05%
Matrix_370	WRKY50; WRKY51	Not Available	50.97%
Matrix_170	AT5G47660	Not Available	50.88%
Matrix_492	ETT	Not Available	50.84%
Matrix_328	AT1G76580	Not Available	50.69%
Motif_467	VOZ binding site	Not Available	50.69%
Matrix_81	YAB1	Not Available	50.63%
Matrix_87	AT1G19000	Not Available	50.61%
Matrix_16	AT3G04450; PHL1	Not Available	50.52%
Matrix_236	CCA1	Not Available	50.47%
Motif_395	RHE_element	Functional Conservation of a Root Hair Cell-Specific cis-Element in Angiosperms with Different Root Hair Distribution Patterns	50.46%
Matrix_418	KNAT6; KNAT2	Not Available	50.45%
Matrix_58	WRKY55; ATWRKY54; WRKY46; WRKY70; AtWRKY41; WRKY53; WRKY30	Not Available	50.30%
Matrix_46	AT4G21895	Not Available	50.22%
Matrix_17	WRKY22	Not Available	50.21%
Matrix_324	AT2G01060	Not Available	50.12%
Matrix_491	AT1G68670; AT3G25790	Not Available	50.11%
Matrix_495	HD-GL2-1; ANL2	Not Available	50.05%
Motif_485	NRRBNEXTA	NRR (negative regulatory region) in promoter region of Brassica napus extA extensin gene; Removal of this region leads to expression in all tissues within the stem internode, petiole and root	50.00%
Motif_126	5256BOXLELAT5256	52/56 box; A sequence motif shared between the tomato LAT(Late Anther Tomato)52 and LAT56 promoters; Encompassing PB core motif (TGTGGTT), and is closely related to the box II sequence motif in the pea rbcS-3A gene promoter; Involved in modulating the activity of the LAT gene promoters in pollen; Dispensable for the developmental regulation of the LAT52 gene in pollen; 52/56 box may be a target for the binding of a member of the GT-1 transcription factor family	50.00%
Motif_489	SORLREP3AT	one of Sequences Over-Represented in Light-Repressed Promoters (SORLREPs) in Arabidopsis; Computationally identified phyA-repressed motifs; See also all SORLREPs and also all SORLIPs;Identification of key promoter motifs involved in the network of light-regulated gene expression by combined analysis of genomic sequence and microarray data	50.00%
Motif_604	EMHVCHORD	Endosperm motif (EM) found in the promoter of barley c-hordein gene; Involved in the nitrogen response of c-hordein promoter	50.00%
Motif_381	GATA-2; GATA-4; GATA-3; GATA-1	Arabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristics	50.00%
Motif_658	GT1CONSENSUS	Consensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expression	50.00%