PLAZA 3.0 Dicots : Binding Sites

Binding sites with simlar sequences

Binding site: Motif_51
Name: MYB46
Description: Identification of a cis-acting regulatory motif recognized by MYB46, a master transcriptional regulator of secondary wall biosynthesis

Sequence: RKTWGGTR
Positional Weight Matrix

Minimum similarity percentage

Binding site	Name	Description	Similarity
Matrix_371	MYB7; AtMYB6; AtMYB32; ATMYB4	Not Available	87.72%
Matrix_460	NAM; anac025; ATNAC2	Not Available	70.72%
Motif_662	MYB26PS	Myb26 binding site; Myb26 recognizes the c-Myb and P-box-like binding sites representing cis-elements in the promoter regions of several phenylpropanoid biosynthetic genes; Identical to P-box in maize, and to Myb305 binding site in snapdragon	70.42%
Motif_136	SEF4MOTIFGM7S	SEF4 binding site; Soybean consensus sequence found in 5'upstream region (-199) of beta-conglycinin (7S globulin) gene (Gmg17.1); Binding with SEF4 (soybean embryo factor 4)	62.50%
Motif_261	S1FBOXSORPS1L21	S1F box conserved both in spinach RPS1 and RPL21 genes encoding the plastid ribosomal protein S1 and L21, respectively; Negative element; Might play a role in downregulating RPS1 and RPL21 promoter activity	62.50%
Matrix_337	MYB46	Not Available	62.31%
Matrix_315	MYB111	Not Available	61.71%
Matrix_490	AtMYB77; ATMYB44	Not Available	59.39%
Matrix_455	MYB111	Not Available	58.74%
Motif_323	MYB1LEPR	Tomato Pti4(ERF) regulates defence-related gene expression via GCC box and non-GCC box cis elements (Myb1(GTTAGTT), G box (CACGTG))	57.92%
Motif_487	ACIIIPVPAL2	ACIII element found at -246 to -238 of bean PAL2 promoter; ACIII element is required for vascular-specific gene expression; See also ACIPVPAL2 and ACIIPVPAL2; Three AC-elements, which are possible Myb protein binding sites, together with a G-box, interact to direct the complex patterns of tissu-specific expression of pAL2 gene	57.92%
Matrix_346	AtMYB70; MYB73	Not Available	57.01%
Matrix_424	MYB59	Not Available	56.65%
Motif_250	ACGTOSGLUB1	ACGT motif found in GluB-1 gene in rice; Required for endosperm-specific expression; Conserved in the 5'-flanking region of glutelin genes; Combination of GCN4, AACA and ACGT motifs was found sufficient to confer a detectable level of endosperm expression	56.25%
Matrix_307	RGL2; RGL3	Not Available	56.04%
Matrix_223	MYB60; ATMYB31; ATMYB30; MYB94; MYBCOV1	Not Available	55.11%
Matrix_137	SPL1; SPL12	Not Available	54.64%
Matrix_299	PFG3	Not Available	53.96%
Matrix_469	NAC041; NAC083	Not Available	53.76%
Motif_308	SP8BFIBSP8AIB	One of SPBF binding site (SP8a); Found at -155 of gSPO-A1 (sporamin) gene, and also at -880 of gB-Amy (beta-amylase) gene in sweet potato; SP8BF recognizes both SP8a and SP8b sequences; See also SP8BFIBSP8BIB; SP8BF activity is also found in tobacco; SP8a found in the 5' upstream region of three differnt genes coding for sporamin and beta-amylase; Binding site of SPF1; SPF1 also binds to the SP8b	53.35%
Matrix_41	anac058	Not Available	51.98%
Motif_181	IBOXCORENT	I-box core motif in the CAMs (conserved DNA modular arrays) associated with light-responsive promoter regions	51.67%
Motif_329	AMMORESIIUDCRNIA1	Motifs (IIU and IID) found in the Chlamydomonas Nia1 gene promoter; Involved in ammonium-response; Located between -231 and -219 and also between -76 and -65; Involved in Nia1 transcription activation	51.67%
Motif_672	AP2	The floral homeotic protein APETALA2 recognizes and acts through an AT-rich sequence element	51.67%
Matrix_7	PIF4	Not Available	51.24%
Matrix_398	TBP2; ATTRB2	Not Available	50.80%
Matrix_44	CUC3; anac046; NAC3; ANAC087; ATNAC6; CUC2	Not Available	50.36%
Matrix_239	AT5G04390	Not Available	50.18%
Matrix_318	ATHB16	Not Available	50.05%
Motif_86	ACGTABOX	A-box according to the nomenclature of ACGT elements; One of ACGT elements; Found in ocs gene; RITA-1 binding site; G motif; G motif and TATCCAY motif (a GATA motif as its antisense sequence) are responsible for sugar repression	50.00%