| Motif_66 | ESPASGL01 | ESP (endosperm specificity palindrome) element found in the promoter of oat (A.s.) globulin gene (AsGlo1) | | 60.00% |
| Motif_508 | CEREGLUBOX1PSLEGA | cereal glutenin box in pea legumin gene (legA); sequence homologous to the cereal glutenin gene control element (-300 element) | | 60.00% |
| Motif_572 | AGL15 BS in AtGA2ox6 | The Embryo MADS Domain Protein AGAMOUS-LIKE15 Directly Regulates Expression of a Gene Encoding an Enzyme Involved in Gibberellin Metabolism | | 60.00% |
| Motif_415 | RBCSGBOXPS | rbcS G-box; 5'upstream region (-211) of pea rbcS gene; binding with trans factor GBF (CG-1); Light-responsiveness | | 60.00% |
| Motif_669 | FUS3; ABI3 | Gene regulation during late embryogenesis: the RY motif of maturation-specific gene promoters is a direct target of the FUS3 gene product | | 60.00% |
| Motif_178 | MRNA3ENDTAH3 | Cis element in 3' end region of wheat histone H3 mRNA; 3' end formation; Also found in histone genes of other plants, yeast | | 60.00% |
| Motif_4 | NAP | An abscisic acid-AtNAP transcription factor-SAG113 protein phosphatase 2C regulatory chain for controlling dehydration in senescing Arabidopsis leaves | | 60.00% |
| Motif_417 | SITE1SORPS1 | Site 1 in the spinach rps1 promoter; S1F binding site; Nuclear genes encoding plastid ribosomal proteins are more highly expressed in leaves than in root; Involved in leaf-specific induction; Seems to be light-independent; Involved in negative regulation; Related to the light-responsive Box II of the pea rbcs-3A promoter; Related to GT elements; S1 box=ATGGTA | | 60.00% |
| Motif_403 | WINPSTPIIIK | Binding site of wound-inducible nuclear protein from wounded tomato leaves; Found in the promoter region of a protease inhibitor IIK gene from potato | | 60.00% |
| Motif_547 | AG BS in AP3 | The CArG boxes in the promoter of the Arabidopsis floral organ identity gene APETALA3 mediate diverse regulatory effects | | 60.00% |
| Motif_556 | INTRONUPPER | 5' exon-intron splice junctions of plant introns; Plant intron upper sequence; Consensus sequence for plant introns | | 56.67% |
| Motif_523 | GATA-2; GATA-4; GATA-3; GATA-1 | Arabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristics | | 53.33% |
| Motif_551 | BOX1PVCHS15 | Box 1 of bean chs15 promoter; one of SBF-1 binding sites in chs15 promoter; Located at -318 to -305; Involved in organ-specific expression in plant development; Functions as a transcriptional silencer in electroporated protoplasts derived from undifferentiated suspension-cultured soybean cells; Resemble the binding site for the GT-1 factor in light-responsive elements | | 53.33% |
| Motif_537 | CONSERVED11NTZMATP1 | Conserved 11 nt sequence found in the maize mitochondrial atp1 promoter; Located between -5 and +6; Essential for the expression | | 53.33% |
| Motif_59 | CEREGLUBOX3PSLEGA | cereal glutenin box in pea (P.s.) legumin gene (legA); sequence homologous to the cereal glutenin gene control elements | | 53.33% |
| Motif_421 | TAC1 | Regulation of telomerase in Arabidopsis by BT2, an apparent target of TELOMERASE ACTIVATOR1 | | 53.33% |
| Motif_384 | SITEIOSPCNA | Site I of rice PCNA (proliferating cell nuclear antigen) gene; Found at -201 to -194; Resemble G-box; May contribute in part to transcriptional activation | | 53.33% |
| Motif_214 | TAC1 | Regulation of telomerase in Arabidopsis by BT2, an apparent target of TELOMERASE ACTIVATOR1 | | 53.33% |
| Motif_175 | BOX2PVCHS15 | Box 2 of bean (P.v.) chs15 promoter; SBF-1 binding site | | 53.33% |
| Motif_176 | AS1LIKECSHPRA | as-1-like motif found in cucumber hydroxypyruvate reductase (hprA) gene; Required for cytokinin responsiveness; Also see CYTOSITECSHPRA | | 53.33% |
| Motif_138 | RAP2.2 | Transcription factor RAP2.2 and its interacting partner SINAT2: stable elements in the carotenogenesis of Arabidopsis leaves | | 53.33% |
| Motif_229 | D2GMAUX28 | D2; DNase I protected sequence found in the soybean auxin responsive gene, Aux28, promoter; Located between -703 and -716; A/T-rich sequence | | 53.33% |
| Motif_240 | IBOXLSCMCUCUMISIN | I-box-like sequence found in the region (from -254 to -215) of cucumisin (a subtilisin-like serine protease) in the fruit of melon; I-box-like sequence functions as a negative regulatory element | | 53.33% |
| Motif_345 | GT-1 | Molecular dissection of GT-1 from Arabidopsis | | 53.33% |
| Motif_78 | SITE3SORPS1 | Site 3 of spinach (S.o.) rps1 promoter; S1F binding site | | 53.33% |
| Motif_308 | SP8BFIBSP8AIB | One of SPBF binding site (SP8a); Found at -155 of gSPO-A1 (sporamin) gene, and also at -880 of gB-Amy (beta-amylase) gene in sweet potato; SP8BF recognizes both SP8a and SP8b sequences; See also SP8BFIBSP8BIB; SP8BF activity is also found in tobacco; SP8a found in the 5' upstream region of three differnt genes coding for sporamin and beta-amylase; Binding site of SPF1; SPF1 also binds to the SP8b | | 53.33% |
| Motif_364 | DE1PSPRA2 | DE1 found in the pea(P.S) pra2 gene promoter; Involved in pra2 down-regulation by phytochrome A, phytochrome B and blue-light photoreceptors; pra2 encodes a small GTPase belonging to the YPT/rab family; DF1 has DNA-binding domain specifically binds to two types of DNA sequences, DE1 and GT2 | | 53.33% |
| Motif_465 | AtMYB44 | Two novel MYB homologues with changed expression in late embryogenesis-defective Arabidopsis mutants | | 53.33% |
| Motif_600 | JASE2 motif in OPR1 | JASE2found in promoter of Arabidopsis thaliana 12-oxo-phytodienoic acid-10,11-reductase (OPR1) gene; Located between -112 and -100; Involved in up-regulation by both senescence and JA; JASE2 contains a mixed A/C box-like motif;Identical promoter elements are involved in regulation of the OPR1 gene by senescence and jasmonic acid in Arabidopsis | | 53.33% |
| Motif_604 | EMHVCHORD | Endosperm motif (EM) found in the promoter of barley c-hordein gene; Involved in the nitrogen response of c-hordein promoter | | 53.33% |
| Motif_616 | BZIP12; ABI5 | The homologous ABI5 and EEL transcription factors function antagonistically to fine-tune gene expression during late embryogenesis | | 53.33% |
| Motif_581 | AP1 BS in AP3 | The CArG boxes in the promoter of the Arabidopsis floral organ identity gene APETALA3 mediate diverse regulatory effects | | 53.33% |
| Motif_656 | AG BS in SUP | Dimerization specificity of Arabidopsis MADS domain homeotic proteins APETALA1, APETALA3, PISTILLATA, and AGAMOUS | | 53.33% |
| Matrix_397 | GT2L | Not Available | | 52.56% |
| Matrix_117 | ANT | Not Available | | 51.69% |
| Matrix_264 | ATAREB1 | Not Available | | 51.04% |
| Motif_47 | CARGNCAT | Noncanonical CArG motif (CC-Wx8-GG) found in the promoter region of DTA1 (AtGA2ox6); A relevant cis element for the response to AGL15 (AGAMOUS-like 15) in vivo | | 50.89% |
| Matrix_367 | REM1 | Not Available | | 50.04% |
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