PLAZA 3.0 Dicots : Binding Sites

Binding sites with simlar sequences

Binding site: Motif_458
Name: ELEMENT2GMLBC3
Description: Element 2 found in the promoter of soybean leghaemoglobin lbc3 gene; Binding site of nuclear extract from soybean nodules; Located at -161 to -176; Element 1 and Element 2 bind to the same nodule specific factor; Element 2 is highly conserved in other soybean lb gene promoter regions

Sequence: CTTAAATTATTTATTT
Positional Weight Matrix

Minimum similarity percentage

Binding site	Name	Description	Similarity
Motif_147	HDMOTIFPCPR2	HD (homeodomain) protein target site in parsley pathogenesis-related protein 2 (PR2); A potential in vivo target site	62.50%
Motif_187	AT1BOX	AT-1 box (AT-rich element) found in the promoter region of the genes for tobacco chlorophyll a/b binding protein (cab) and small subunit of ribulose-1,5-bisphosphate carboxylase (rbcS); Deletion of a region containing the AT-1 site in the tomato RBCS3A gene strongly inhibited reporter gene expression, whereas AT-1 site in N. plumbaginifolia CAB gene (cab-E) is in a negative element	62.50%
Matrix_29	AP1	Not Available	58.95%
Motif_631	MARARS	ARS element; Motif found in SAR (MAR)	57.09%
Motif_547	AG BS in AP3	The CArG boxes in the promoter of the Arabidopsis floral organ identity gene APETALA3 mediate diverse regulatory effects	56.25%
Motif_175	BOX2PVCHS15	Box 2 of bean (P.v.) chs15 promoter; SBF-1 binding site	56.25%
Motif_185	CArG2 motif in AP3	CArG2 found in the Arabidopsis APETALA3 (AP3) gene promoter; Mutations in CArG2 result in a decrease in the expression in petals, but the expression pattern in stamens is unchanged; The CArG boxes in the promoter of the Arabidopsis floral organ identity gene APETALA3 mediate diverse regulatory effects	56.25%
Motif_624	ATHB6 binding site motif	Consensus binding sequence for Arabidopsis homeodomain-leucine zipper protein, ATHB6; ATHB6 is a target of the protein phosphatase ABI1 and regulates hormone responses; Homeodomain protein ATHB6 is a target of the protein phosphatase ABI1 and regulates hormone responses in Arabidopsis	56.25%
Motif_294	HSRENTHSR203J	HSRE(HSR203 responsive element) in tobacco responsible for the marked induction of the HSR203J gene during the HR (hypersensitive response); HSR203J is specifically activated during the early steps of incompatible plant/pathogen interactions	56.25%
Motif_55	MRNASTA1CRPSBD	mRNA stability determinant found in 5'-UTR of psbD mRNA of Chlamydomonas reinhardtii; Required for the stable accumulation; Located within the first 12 nucleotides of the leader region	56.25%
Motif_38	RSEPVGRP1	RSE (root-specific element) of bean GRP1.8 gene; consensus sequence	56.25%
Motif_494	TOPOISOM	Topoisomerase cleavage site consensus sequence; Motif found in SAR (scaffold attachment region; or matrix attachment region, MAR)	53.44%
Motif_615	MARTBOX	T-Box; Motif found in SAR (scaffold attachment region; or matrix attachment region, MAR)	53.13%
Matrix_523	FUSCA3	Not Available	52.88%
Matrix_89	SOC1	Genome-wide identification of SOC1 and SVP targets during the floral transition in Arabidopsis	52.83%
Matrix_205	AGL15	Not Available	52.67%
Matrix_353	HAT5	Not Available	52.29%
Matrix_51	LFY	Not Available	51.73%
Matrix_364	FLC	Not Available	51.46%
Matrix_391	AHL20	Not Available	50.92%
Motif_285	HDZIP2ATATHB2	Binding site of the Arabidopsis homeobox gene (ATHB-2) found in its own promoter; Located between -72 and -80; Similar to the HD-ZIP-2 binding consensus sequence; ATHB-2 is regulated by light signals which function as a negative autoregulator of its own gene	50.84%
Motif_142	HDZIPIIIAT	Ath b-9 HD-Zip (HD-Zip-9), a member of a small family of HD-Zip proteins (HD-ZIP III), in Arabidopsis recognize this sequence	50.84%
Motif_446	C1MOTIFZMBZ2	C1-motif; Similar to Myb-box; Found in the promoter region of maize Bronze2 ( glutathione S-transferase) gene; C1 binding; C1-motif and R-motif were shown to be important for full R and C1 activation of the Bz2 promoter	50.84%
Motif_613	SB3NPABC1	Sclareol box3 (SB3) found at -216 of a plasma membrane ATP binding cassette (ABC) transporter gene (NpABC1) in N. plumbaginifolia; Mutation in SB3 completely abolished sclareolide-mediated expression	50.00%
Motif_428	GLUTEBOX2OSGT3	Box 2 of rice glutelin Gt3 gene family promoter region; See GLUTEBOX1A	50.00%
Motif_408	EVENINGAT	Evening element found 46 times in the promoters of 31 cycling genes in Arabidopsis thaliana; Required for circadian control of gene expression; EE (evening element) motif; Also found in the promoter of the Solanum melongena gene encoding cysteine protease, and identified as cis-element for its circadian regulation;Orchestrated transcription of key pathways in Arabidopsis by the circadian clock	50.00%
Motif_148	CArG3 motif in AP3	CArG3 found in the Arabidopsis APETALA3 (AP3) gene promoter; Binding site of AP3/PI heterodimer; Binding site for a negatively acting factors; Binding sequence of Arabidopsis MADS domain homeotic proteins APETALA1, APETALA3, PISTILLATA, and AGAMOUS; AP1, AG, and AP3-PI complexes induce similar conformational changes on a CArG-box sequence; The CArG boxes in the promoter of the Arabidopsis floral organ identity gene APETALA3 mediate diverse regulatory effects	50.00%
Motif_151	CCA1 motif2 BS in CAB1	A myb-related transcription factor is involved in the phytochrome regulation of an Arabidopsis Lhcb gene	50.00%
Motif_229	D2GMAUX28	D2; DNase I protected sequence found in the soybean auxin responsive gene, Aux28, promoter; Located between -703 and -716; A/T-rich sequence	50.00%
Motif_646	AACAOSGLUB1	AACA motif found in GluB-1 gene in rice; Required for endosperm-specific expression; Highly conserved in the 5'-flanking region of glutelin genes	50.00%
Motif_225	PRHA BS in PAL1; PRHA BS in PAL1	Developmental and auxin-induced expression of the Arabidopsis prha homeobox gene	50.00%
Motif_572	AGL15 BS in AtGA2ox6	The Embryo MADS Domain Protein AGAMOUS-LIKE15 Directly Regulates Expression of a Gene Encoding an Enzyme Involved in Gibberellin Metabolism	50.00%
Motif_581	AP1 BS in AP3	The CArG boxes in the promoter of the Arabidopsis floral organ identity gene APETALA3 mediate diverse regulatory effects	50.00%
Motif_521	RBCSBOX3PS	rbcS box III; 5' upstream region (-114) of pea rbcS gene; binding with trans factor GT-1; one of GT-1 boxes	50.00%
Motif_298	GMHDLGMVSPB	Binding site of the soybean homeodomein leucine zipper proteins (GmHdl56, GmHdl57); Found in the phosphate response domain of the soybean VspB promoter; Located between -536 and -527; VspB encodes vacuolar glycoprotein acid phosphatase that serve as vegetative storage protein	50.00%
Motif_642	SEF1MOTIF	SEF1 (soybean embryo factor 1) binding motif; sequence found in 5'-upstream region (-640; -765) of soybean beta-conglicinin (7S globulin) gene	50.00%
Motif_664	C1GMAUX28	C1; DNase I protected sequence found in the soybean auxin responsive gene, Aux28, promoter; Located between -463 and -448; A/T-rich sequence	50.00%
Motif_34	LECPLEACS2	Core element in LeCp (tomato Cys protease) binding cis-element (from -715 to -675) in LeAcs2 gene	50.00%
Motif_23	14BPATERD1	14 bp region (from -599 to -566) necessary for expression of erd1 (early responsive to dehydration) in dehydrated Arabidopsis	50.00%
Motif_677	AGL22; AGL20; AGL24	Regulation of floral patterning by flowering time genes	50.00%