PLAZA 3.0 Dicots : Binding Sites

Binding sites with simlar sequences

Binding site: Motif_44
Name: AGL25
Description: FLOWERING LOCUS C (FLC) regulates development pathways throughout the life cycle of Arabidopsis

Sequence: CCCAAAATAGAAA
Positional Weight Matrix

Minimum similarity percentage

Binding site	Name	Description	Similarity
Motif_449	AGL25; SVP	FLOWERING LOCUS C (FLC) regulates development pathways throughout the life cycle of Arabidopsis. Genome-wide identification of SOC1 and SVP targets during the floral transition in Arabidopsis	92.31%
Motif_45	AGL25; SOC1	FLOWERING LOCUS C (FLC) regulates development pathways throughout the life cycle of Arabidopsis;Genome-wide identification of SOC1 and SVP targets during the floral transition in Arabidopsis	84.62%
Matrix_149	PI	Not Available	63.37%
Matrix_407	AP1	Not Available	63.02%
Matrix_132	SOC1	Not Available	61.83%
Motif_588	TL1ATSAR	TL1, a consensus sequence overrepresented in the promoter regions of all 13 NPR1-responsive ER-resident genes surveyed; NPR1 is Nonexpressor of pathogenesis-related genes 1, also known as NIM1	61.54%
Matrix_464	AGL15; AGL71	Not Available	58.59%
Matrix_18	AP3	Not Available	57.42%
Matrix_136	SEP3	Not Available	57.29%
Matrix_353	HAT5	Not Available	55.69%
Motif_153	MARABOX1	A-box found in SAR(scaffold attachment region; or matrix attachment region, MAR)	54.88%
Matrix_497	AP3	Not Available	54.54%
Matrix_364	FLC	Not Available	54.15%
Motif_23	14BPATERD1	14 bp region (from -599 to -566) necessary for expression of erd1 (early responsive to dehydration) in dehydrated Arabidopsis	53.85%
Motif_387	AG BS in SPL/NOZ	The homeotic protein AGAMOUS controls microsporogenesis by regulation of SPOROCYTELESS	53.85%
Motif_297	Bellringer/replumless/pennywise BS1 IN AG	Repression of AGAMOUS by BELLRINGER in Floral and Inflorescence Meristems	53.85%
Motif_202	OPAQUE2ZM22Z	Opaque-2 (O2) target sequence in maize 22- and 27-kD zein promoters; ACGT motif; Related to seed expression; O2 target sequence; Gene: maize 22-kD zein; transacting factor: 02	53.85%
Motif_267	WBOXGACAD1A	W-box found in the promoter region of the CAD1-A (cotton (+) delta-cadinene synthase-A) gene (located in the region -340 to -327) of cotton;Binding site of GaWRKY1; GaWRKY1 regulates sesquiterpene biosynthesis in cotton	53.85%
Motif_296	MYB98	MYB98 positively regulates a battery of synergid-expressed genes encoding filiform apparatus localized proteins	53.85%
Motif_93	RGATAOS	R-GATA (GATA motif binding factor) binding site; GATA motif is found at -143 to -135 of RTBV promoter; GATA motif is required for phloem-specific gene expression of Rice Tungro Bacilliform Virus (RTBV); See also RNFG1OS, RNFG2OS, and ABFOS	53.85%
Motif_416	MYB80	The MYB80 transcription factor is required for pollen development and the regulation of tapetal programmed cell death in Arabidopsis thaliana	53.85%
Motif_9	RBENTGA3	rbe (RSG binding element) found in the tobacco GA3 gene promoter; Binding site of RSG (Repression of shoot growth); RSG is a bZIP transcriptional activator; RSG regulates the morphology of plants by controlling the endogenous amounts of GAs	53.85%
Motif_537	CONSERVED11NTZMATP1	Conserved 11 nt sequence found in the maize mitochondrial atp1 promoter; Located between -5 and +6; Essential for the expression	53.85%
Motif_496	JASE1ATOPR1	JASE1found in promoter of Arabidopsis thaliana 12-oxo-phytodienoic acid-10,11-reductase (OPR1) gene; Located between -179 and -170; Involved in up-regulation by both senescence and JA;Identical promoter elements are involved in regulation of the OPR1 gene by senescence and jasmonic acid in Arabidopsis	53.85%
Motif_646	AACAOSGLUB1	AACA motif found in GluB-1 gene in rice; Required for endosperm-specific expression; Highly conserved in the 5'-flanking region of glutelin genes	53.85%
Motif_516	BZIP12; ABI5	The homologous ABI5 and EEL transcription factors function antagonistically to fine-tune gene expression during late embryogenesis	53.85%
Motif_598	SORLIP3AT	one of Sequences Over-Represented in Light-Induced Promoters (SORLIPs) in Arabidopsis; Computationally identified phyA-induced motifs; See also all SORLIPs and also all SORLREPs; Identification of key promoter motifs involved in the network of light-regulated gene expression by combined analysis of genomic sequence and microarray data	53.85%
Motif_477	MYB1; MYB2	An Arabidopsis myb homolog is induced by dehydration stress and its gene product binds to the conserved MYB recognition sequence;Evidence for a role for AtMYB2 in the induction of the Arabidopsis alcohol dehydrogenase gene (ADH1) by low oxygen	53.85%
Motif_76	SURE1STPAT21	Sucrose Responsive Element (SURE); A motif conserved among genes regulated by sucrose; See also SURE2STPAT21; Found between -184 and -156 bp in the patatin (a major tuber protein) gene promoter of potato	53.85%
Motif_138	RAP2.2	Transcription factor RAP2.2 and its interacting partner SINAT2: stable elements in the carotenogenesis of Arabidopsis leaves	53.85%
Motif_549	TBF1	The HSF-like transcription factor TBF1 is a major molecular switch for plant growth-to-defense transition	53.85%
Motif_476	XYLAT	cis-element identified among the promoters of the core xylem gene set	53.85%
Motif_679	SB1NPABC1	Sclareol box1 (SB1) found at -827 of a plasma membrane ATP binding cassette (ABC) transporter gene (NpABC1) in N. plumbaginifolia; Mutation in SB3 completely abolished sclareolide-mediated expression	53.85%
Matrix_262	ATGRP2B; CSDP2	Not Available	53.44%
Matrix_184	AGL15	Not Available	53.06%
Matrix_13	HAT5	Not Available	52.17%
Motif_143	VND6	Arabidopsis VASCULAR-RELATED NAC-DOMAIN6 directly regulates the genes that govern programmed cell death and secondary wall formation during xylem differentiation	52.12%
Matrix_72	CDF2	Not Available	51.48%
Matrix_25	AP3	Not Available	50.98%
Matrix_74	LFY	Not Available	50.89%
Matrix_501	DAG2	Not Available	50.22%