PLAZA 3.0 Dicots : Binding Sites

Binding sites with simlar sequences

Binding site: Motif_411
Name: PRECONSCRHSP70A
Description: Consensus sequence of PRE (plastid response element) in the promoters of HSP70A in Chlamydomonas; Involved in induction of HSP70A gene by both MgProto and light

Sequence: SCGAYNRNNNNNNNNNNNNNNNHD
Positional Weight Matrix

Minimum similarity percentage

Binding site	Name	Description	Similarity
Motif_156	HBOXPVCHS15	Binding site of two bean protein factors, KAP-1 and KAP-2; KAP-1 is a 97 kDa polypeptide; KAP-2 comprises two polypeptides of 76 kDa and 56 kDa; Elicitation of bean cell with glutathione causes a rapid increase in specific activities of KAP-1 and KAP2	64.94%
Motif_79	UPRMOTIFIIAT	Motif II in the conserved UPR (unfolded protein response) cis-acting element in Arabidopsis genes coding for SAR1B, HSP-90, SBR-like, Ca-ATPase 4, CNX1, PDI, etc	64.62%
Motif_346	SND1; VND6; VND7; NST1; NST2	Global analysis of direct targets of secondary wall NAC master switches in Arabidopsis	64.44%
Matrix_356	PRR5	Not Available	56.84%
Matrix_267	FLM; FLC; MAF2; FCL3; AGL69; AGL68	Not Available	54.37%
Matrix_189	WRI1	An AP2-type transcription factor, WRINKLED1, of Arabidopsis thaliana binds to the AW-box sequence conserved among proximal upstream regions of genes involved in fatty acid synthesis	53.74%
Matrix_250	ADAP; AT1G79700; WRI1; ANT	Not Available	53.71%
Matrix_105	SPL14	Not Available	53.65%
Matrix_342	SPL14	Identification of a Consensus DNA-Binding Site for the Arabidopsis thaliana SBP Domain Transcription Factor, AtSPL14, and Binding Kinetics by Surface Plasmon Resonance	53.62%
Motif_635	LFY	Structural basis for LEAFY floral switch function and similarity with helix-turn-helix proteins	53.12%
Motif_159	LFY	Structural basis for LEAFY floral switch function and similarity with helix-turn-helix proteins	53.12%
Motif_527	LFY	Structural basis for LEAFY floral switch function and similarity with helix-turn-helix proteins	53.12%
Matrix_372	ANAC81	DNA binding specificity of ATAF2, a NAC domain transcription factor targeted for degradation by Tobacco mosaic virus	52.89%
Motif_3	ANAC059	ORS1, an H2O2-Responsive NAC Transcription Factor, Controls Senescence in Arabidopsis thaliana	52.87%
Motif_241	OCETYPEIIINTHISTONE	Type III element; Oct-containing composite element Type III found in tobacco histone gene promoter; Oct (octomer) motif is paired with CCAAT-box to form Type III element; Required for S-phase specific and meristematic tissue-specific expression	51.53%
Matrix_121	SHP1	Not Available	51.22%
Matrix_386	AGL1	DNA binding properties of two Arabidopsis MADS domain proteins: binding consensus and dimer formation	51.22%
Motif_686	LFY	Structural basis for LEAFY floral switch function and similarity with helix-turn-helix proteins	51.04%
Motif_504	LFY	Structural basis for LEAFY floral switch function and similarity with helix-turn-helix proteins	51.04%
Motif_289	LFY	Structural basis for LEAFY floral switch function and similarity with helix-turn-helix proteins	51.04%
Matrix_485	SVP; AGL24	Not Available	50.65%
Matrix_417	SEP4	Not Available	50.24%
Matrix_310	AGL3	The Arabidopsis MADS-box gene AGL3 is widely expressed and encodes a sequence-specific DNA-binding protein	50.24%
Matrix_2	SEP4	Not Available	50.24%