PLAZA 3.0 Dicots : Binding Sites

Binding sites with simlar sequences

Binding site: Motif_41
Name: ARR2
Description: Arabidopsis ARR1 and ARR2 response regulators operate as transcriptional activators

Sequence: TTTGATTGT
Positional Weight Matrix

Minimum similarity percentage

Binding site	Name	Description	Similarity
Motif_464	ARR1; ARR2	Arabidopsis ARR1 and ARR2 response regulators operate as transcriptional activators	82.08%
Motif_582	ARR1; ARR2	Arabidopsis ARR1 and ARR2 response regulators operate as transcriptional activators	72.22%
Matrix_303	ATWOX13	Not Available	70.45%
Matrix_347	WOX14; WOX10	Not Available	69.85%
Motif_376	WRKY63	ABO3, a WRKY transcription factor, mediates plant responses to abscisic acid and drought tolerance in Arabidopsis	66.67%
Motif_381	GATA-2; GATA-4; GATA-3; GATA-1	Arabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristics	66.67%
Motif_672	AP2	The floral homeotic protein APETALA2 recognizes and acts through an AT-rich sequence element	66.67%
Motif_378	WRKY6	Targets of AtWRKY6 regulation during plant senescence and pathogen defense	66.67%
Motif_321	TATABOX5	TATA box; TATA box found in the 5'upstream region of pea (Pisum sativum) glutamine synthetase gene; a functional TATA element by in vivo analysis	66.67%
Matrix_71	ATHB7	Not Available	64.51%
Matrix_512	HAT3	Not Available	62.13%
Matrix_302	HAT1; HAT2	Not Available	61.78%
Matrix_182	ATHB6	Not Available	61.22%
Motif_348	WBBOXPCWRKY1	WB box; WRKY proteins bind specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box; Found in amylase gene in sweet potato, alpha-Amy2 genes in wheat, barley, and wild oat, PR1 gene in parsley, and a transcription factor gene in Arabidopsis	61.11%
Motif_5	SORLREP1	Identification of key promoter motifs involved in the network of light-regulated gene expression by combined analysis of genomic sequence and microarray data	61.11%
Matrix_461	ATHB12	Not Available	58.85%
Matrix_283	GATA15; GATA17; AT4G16141; GATA22; GATA23; GATA16; GNC	Not Available	57.68%
Motif_615	MARTBOX	T-Box; Motif found in SAR (scaffold attachment region; or matrix attachment region, MAR)	57.04%
Matrix_516	ANAC038; ANAC079	Not Available	56.24%
Motif_133	TAC1	Regulation of telomerase in Arabidopsis by BT2, an apparent target of TELOMERASE ACTIVATOR1	55.56%
Motif_334	MYB1; MYB2	An Arabidopsis myb homolog is induced by dehydration stress and its gene product binds to the conserved MYB recognition sequence. Evidence for a role for AtMYB2 in the induction of the Arabidopsis alcohol dehydrogenase gene (ADH1) by low oxygen	55.56%
Motif_40	MRNASTA2CRPSBD	mRNA stability determinant found in 5'-UTR of psbD mRNA of Chlamydomonas reinhardtii; Required for the stable accumulation; Located near position -30 relative to the AUG initiation codon	55.56%
Motif_49	TATAPVTRNALEU	TATA-like motif; A TATA-like sequence found in Phaseolus vulgaris tRNALeu gene promoter; Frequently observed upstream of plant tRNA genes; Found in maize glycolytic glyceraldehyde-3-phospate dehydrogenase 4 (GapC4) gene promoter; Binding site of TATA binding protein (TBP)	55.56%
Motif_258	-10PEHVPSBD	-10 promoter element found in the barley (H.v.) chloroplast psbD gene promoter; Involved in the expression of the plastid gene psbD which encodes a photosystem II reaction center chlorophyll-binding protein that is activated by blue, white or UV-A light	55.56%
Motif_135	WRKY11	Studies on DNA-binding selectivity of WRKY transcription factors lend structural clues into WRKY-domain function	55.56%
Motif_282	D4GMAUX28	D4; DNase I protected sequence found in the soybean auxin responsive gene, Aux28, promoter; D1 and D4 share a very similar core sequence TAGTXXCTGT and TAGTXCTGT, respectively; D1/D4-like sequence were identified in several other auxin-responsive genes	55.56%
Motif_59	CEREGLUBOX3PSLEGA	cereal glutenin box in pea (P.s.) legumin gene (legA); sequence homologous to the cereal glutenin gene control elements	55.56%
Motif_523	GATA-2; GATA-4; GATA-3; GATA-1	Arabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristics	55.56%
Motif_424	GATA-1	Arabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristics	55.56%
Motif_533	Bellringer/replumless/pennywise BS3 IN AG	Repression of AGAMOUS by BELLRINGER in Floral and Inflorescence Meristems	55.56%
Motif_91	SORLIP4AT	one of Sequences Over-Represented in Light-Induced Promoters (SORLIPs) in Arabidopsis; Computationally identified phyA-induced motifs; Identification of key promoter motifs involved in the network of light-regulated gene expression by combined analysis of genomic sequence and microarray data	55.56%
Motif_610	GATA-2; GATA-4; GATA-3; GATA-1	Arabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristics	55.56%
Motif_604	EMHVCHORD	Endosperm motif (EM) found in the promoter of barley c-hordein gene; Involved in the nitrogen response of c-hordein promoter	55.56%
Motif_587	WRKY18	Identification of genes encoding receptor-like protein kinases as possible targets of pathogen- and salicylic acid-induced WRKY DNA-binding proteins in Arabidopsis	55.56%
Motif_508	CEREGLUBOX1PSLEGA	cereal glutenin box in pea legumin gene (legA); sequence homologous to the cereal glutenin gene control element (-300 element)	55.56%
Motif_489	SORLREP3AT	one of Sequences Over-Represented in Light-Repressed Promoters (SORLREPs) in Arabidopsis; Computationally identified phyA-repressed motifs; See also all SORLREPs and also all SORLIPs;Identification of key promoter motifs involved in the network of light-regulated gene expression by combined analysis of genomic sequence and microarray data	55.56%
Motif_325	WRKY18	Identification of genes encoding receptor-like protein kinases as possible targets of pathogen- and salicylic acid-induced WRKY DNA-binding proteins in Arabidopsis	55.56%
Motif_231	EIN3	Ethylene signaling in Arabidopsis involves feedback regulation via the elaborate control of EBF2 expression by EIN3	55.56%
Motif_190	WUSATAg	Target sequence of WUS in the intron of AGAMOUS gene in Arabidopsis	55.56%
Motif_216	PYRIMIDINEBOXHVEPB1	Pyrimidine box found in the barley EPB-1 (cysteine proteinase) gene promoter; Located between -120 to -113; Required for GA induction	55.56%
Motif_323	MYB1LEPR	Tomato Pti4(ERF) regulates defence-related gene expression via GCC box and non-GCC box cis elements (Myb1(GTTAGTT), G box (CACGTG))	55.56%
Motif_639	WRKY18	Identification of genes encoding receptor-like protein kinases as possible targets of pathogen- and salicylic acid-induced WRKY DNA-binding proteins in Arabidopsis	55.56%
Motif_576	TGACGTVMAMY	TGACGT motif found in the Vigna mungo alpha-Amylase (Amy) gene promoter; Located between -128 and -123; Required for high level expression of alpha-Amylase in the cotyledons of the germinated seeds	55.56%
Matrix_435	ATHB51	Not Available	53.51%
Matrix_274	EDF3	Not Available	53.12%
Matrix_318	ATHB16	Not Available	52.43%
Matrix_62	HAT5	Not Available	52.21%
Matrix_44	CUC3; anac046; NAC3; ANAC087; ATNAC6; CUC2	Not Available	52.08%
Motif_136	SEF4MOTIFGM7S	SEF4 binding site; Soybean consensus sequence found in 5'upstream region (-199) of beta-conglycinin (7S globulin) gene (Gmg17.1); Binding with SEF4 (soybean embryo factor 4)	51.49%
Matrix_351	HAT9; ATHB-4; ATHB2; HAT22; HAT14	Not Available	50.51%
Motif_116	INRNTPSADB	Inr (initiator) elements found in the tobacco psaDb gene promoter without TATA boxes; Light-responsive transcription of psaDb depends on Inr, but not TATA box	50.24%
Motif_207	MAMMALENHAN	Core sequence in enhancers from polyoma virus and from the IgM heavy chain gene	50.00%
Motif_347	OPAQUE2ZMB32	opaque-2 binding site of maize b-32 (type I ribosome-inactivating protein gene); O2; O2S; O2S and GARE form a gibberellin response complex (GARC)	50.00%
Motif_262	WRKY70	Identification of a novel type of WRKY transcription factor binding site in elicitor-responsive cis-sequences from Arabidopsis thaliana	50.00%
Motif_165	AP3SV40	AP-3 binding site consensus sequence in enhancer regions of SV40, MMTV, MLV, IL2	50.00%
Motif_169	ATHB2 binding site motif	Recognition sequence of Arabidopsis Athb-2 protein; Athb-2 protein has a HD-Zip motif (homeodomain (HD) with a closely linked leucine zipper motif (Zip)); The Athb-1 and -2 HD-Zip domains homodimerize forming complexes of different DNA binding specificities	50.00%
Motif_631	MARARS	ARS element; Motif found in SAR (MAR)	50.00%