PLAZA 3.0 Dicots : Binding Sites

Binding sites with simlar sequences

Binding site: Motif_329
Name: AMMORESIIUDCRNIA1
Description: Motifs (IIU and IID) found in the Chlamydomonas Nia1 gene promoter; Involved in ammonium-response; Located between -231 and -219 and also between -76 and -65; Involved in Nia1 transcription activation

Sequence: GGWAGGGT
Positional Weight Matrix

Minimum similarity percentage

Binding site	Name	Description	Similarity
Motif_662	MYB26PS	Myb26 binding site; Myb26 recognizes the c-Myb and P-box-like binding sites representing cis-elements in the promoter regions of several phenylpropanoid biosynthetic genes; Identical to P-box in maize, and to Myb305 binding site in snapdragon	68.75%
Matrix_487	AT1G29160	Not Available	57.11%
Matrix_371	MYB7; AtMYB6; AtMYB32; ATMYB4	Not Available	56.83%
Motif_604	EMHVCHORD	Endosperm motif (EM) found in the promoter of barley c-hordein gene; Involved in the nitrogen response of c-hordein promoter	56.25%
Motif_487	ACIIIPVPAL2	ACIII element found at -246 to -238 of bean PAL2 promoter; ACIII element is required for vascular-specific gene expression; See also ACIPVPAL2 and ACIIPVPAL2; Three AC-elements, which are possible Myb protein binding sites, together with a G-box, interact to direct the complex patterns of tissu-specific expression of pAL2 gene	56.25%
Motif_323	MYB1LEPR	Tomato Pti4(ERF) regulates defence-related gene expression via GCC box and non-GCC box cis elements (Myb1(GTTAGTT), G box (CACGTG))	56.25%
Matrix_137	SPL1; SPL12	Not Available	55.85%
Motif_495	TRANSINITMONOCOTS	Context sequence of translational initiation codon in monocots	53.51%
Matrix_411	DOF5.6	Not Available	52.39%
Motif_51	MYB46	Identification of a cis-acting regulatory motif recognized by MYB46, a master transcriptional regulator of secondary wall biosynthesis	51.67%
Motif_251	SUP	The Arabidopsis SUPERMAN protein is able to specifically bind DNA through its single Cys2-His2 zinc finger motif	51.67%
Motif_421	TAC1	Regulation of telomerase in Arabidopsis by BT2, an apparent target of TELOMERASE ACTIVATOR1	51.67%
Motif_305	SP1SV40	SP-1 binding site (GC box) in enhancer regions of SV40 and human metallothionein IIA (hMT IIA)	51.67%
Motif_653	INTRONLOWER	3' intron-exon splice junctions; Plant intron lower sequence; Consensus sequence for plant introns	51.67%
Motif_65	BS1EGCCR	BS1 (binding site 1) found in E. gunnii Cinnamoyl-CoA reductase (CCR) gene promoter; nuclear protein binding site; Required for vascular expression	51.67%
Motif_189	CMSRE1IBSPOA	CMSRE-1 (Carbohydrate Metabolite Signal Responsive Element 1) found in the promoter of sweet potato sporamin A gene	51.67%
Matrix_11	TRFL5	Not Available	50.89%
Motif_576	TGACGTVMAMY	TGACGT motif found in the Vigna mungo alpha-Amylase (Amy) gene promoter; Located between -128 and -123; Required for high level expression of alpha-Amylase in the cotyledons of the germinated seeds	50.00%
Motif_443	KN1; BP	The knotted1-like homeobox gene BREVIPEDICELLUS regulates cell differentiation by modulating metabolic pathways. Selective interaction of plant homeodomain proteins mediates high DNA-binding affinity	50.00%
Motif_181	IBOXCORENT	I-box core motif in the CAMs (conserved DNA modular arrays) associated with light-responsive promoter regions	50.00%
Motif_658	GT1CONSENSUS	Consensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expression	50.00%