PLAZA 3.0 Dicots : Binding Sites

Binding sites with simlar sequences

Binding site: Motif_304
Name: SRENTTTO1
Description: Stress responsive element (SRE) in tobacco retrotransposon Tto1; A 13 bp cis-regulatory element in the LTR promoter of the tobacco retrotransposon Tto1; Involved in responsiveness to tissue culture, wounding, methyl jasmonate and fungal elicitors; Contains a conserved motif, Box L

Sequence: TGGTAGGTGAGAT
Positional Weight Matrix

Minimum similarity percentage

Binding site	Name	Description	Similarity
Matrix_211	MYB3	Not Available	65.93%
Matrix_299	PFG3	Not Available	65.37%
Motif_489	SORLREP3AT	one of Sequences Over-Represented in Light-Repressed Promoters (SORLREPs) in Arabidopsis; Computationally identified phyA-repressed motifs; See also all SORLREPs and also all SORLIPs;Identification of key promoter motifs involved in the network of light-regulated gene expression by combined analysis of genomic sequence and microarray data	61.54%
Motif_485	NRRBNEXTA	NRR (negative regulatory region) in promoter region of Brassica napus extA extensin gene; Removal of this region leads to expression in all tissues within the stem internode, petiole and root	61.54%
Motif_126	5256BOXLELAT5256	52/56 box; A sequence motif shared between the tomato LAT(Late Anther Tomato)52 and LAT56 promoters; Encompassing PB core motif (TGTGGTT), and is closely related to the box II sequence motif in the pea rbcS-3A gene promoter; Involved in modulating the activity of the LAT gene promoters in pollen; Dispensable for the developmental regulation of the LAT52 gene in pollen; 52/56 box may be a target for the binding of a member of the GT-1 transcription factor family	61.54%
Matrix_455	MYB111	Not Available	59.54%
Matrix_315	MYB111	Not Available	58.87%
Motif_329	AMMORESIIUDCRNIA1	Motifs (IIU and IID) found in the Chlamydomonas Nia1 gene promoter; Involved in ammonium-response; Located between -231 and -219 and also between -76 and -65; Involved in Nia1 transcription activation	57.69%
Matrix_337	MYB46	Not Available	57.17%
Motif_5	SORLREP1	Identification of key promoter motifs involved in the network of light-regulated gene expression by combined analysis of genomic sequence and microarray data	54.88%
Motif_556	INTRONUPPER	5' exon-intron splice junctions of plant introns; Plant intron upper sequence; Consensus sequence for plant introns	54.88%
Matrix_514	DYT1	Regulation of the Arabidopsis anther transcriptome by DYT1 for pollen development	54.46%
Motif_135	WRKY11	Studies on DNA-binding selectivity of WRKY transcription factors lend structural clues into WRKY-domain function	53.85%
Motif_85	SORLIP5AT	one of Sequences Over-Represented in Light-Induced Promoters (SORLIPs) in Arabidopsis; Computationally identified phyA-induced motifs; Over-represented in both light-induced cotyledon-specific and root-specific genes; Identification of key promoter motifs involved in the network of light-regulated gene expression by combined analysis of genomic sequence and microarray data	53.85%
Motif_314	HY5AT	G box; Binding site of Arabidopsis bZIP protein HY5; HY5 is constitutively nuclear localized and is involved in light regulation of transcriptional activity of the promoters containing the G-box;HY5 abundance peaks in early seedling development, consistent with its role in promoting photomorphogenesis; HY5 stability and activity is regulated by phosphorylation in its COP1 binding domain; HY5 regulates stimulus-induced development of root and hypocotyl	53.85%
Motif_652	AUXRETGA2GMGH3	TGA-box #2 in putative auxin-resonsive element (AUXRE) E1 of soybean GH3 promoter; Strong binding site for proteins in plant nuclear extracts; Hex-like element; E1 element=-249 to -203; E2 element=-241 to -224	53.85%
Motif_282	D4GMAUX28	D4; DNase I protected sequence found in the soybean auxin responsive gene, Aux28, promoter; D1 and D4 share a very similar core sequence TAGTXXCTGT and TAGTXCTGT, respectively; D1/D4-like sequence were identified in several other auxin-responsive genes	53.85%
Motif_412	SORLREP5AT	one of Sequences Over-Represented in Light-Repressed Promoters (SORLREPs) in Arabidopsis; Computationally identified phyA-repressed motifs; See also all SORLREPs and all SORLIPs; Identification of key promoter motifs involved in the network of light-regulated gene expression by combined analysis of genomic sequence and microarray data	53.85%
Motif_133	TAC1	Regulation of telomerase in Arabidopsis by BT2, an apparent target of TELOMERASE ACTIVATOR1	53.85%
Motif_662	MYB26PS	Myb26 binding site; Myb26 recognizes the c-Myb and P-box-like binding sites representing cis-elements in the promoter regions of several phenylpropanoid biosynthetic genes; Identical to P-box in maize, and to Myb305 binding site in snapdragon	53.85%
Motif_491	GT-1	Molecular dissection of GT-1 from Arabidopsis	53.85%
Motif_59	CEREGLUBOX3PSLEGA	cereal glutenin box in pea (P.s.) legumin gene (legA); sequence homologous to the cereal glutenin gene control elements	53.85%
Motif_17	AUXRETGA1GMGH3	TGA-box #1 in putative auxin-resonsive element (AUXRE) of soybean GH3 promoter; Strong binding site for proteins in plant nuclear extracts	53.85%
Motif_439	LREBOX2PSRBCS3	LRE (light-responsive element) Box II of pea rbcS-3A gene; GT-1 binding; GT-motif; GT1 motif; Some similarity to SV40 enhancer core sequence;BoxII Binding site of transcriptional factor GTI; Located at -152 to -138; Confers light responsiveness;Sequence-specific interactions of a pea nuclear factor with light-responsive elements upstream of the rbcS-3A gene	53.85%
Motif_440	TGA1 binding site motif	Hex motif; Binding site of Arabidopsis bZIP protein TGA1 and G box binding factor GBF1; TGA1 and members of the GBF family differ in their DNA binding properties; G-Box-like element;TGA1 and G-box binding factors: two distinct classes of Arabidopsis leucine zipper proteins compete for the G-box-like element TGACGTGG	53.85%
Motif_528	ABI5	The homologous ABI5 and EEL transcription factors function antagonistically to fine-tune gene expression during late embryogenesis	53.85%
Motif_604	EMHVCHORD	Endosperm motif (EM) found in the promoter of barley c-hordein gene; Involved in the nitrogen response of c-hordein promoter	53.85%
Motif_322	GATA-1	Arabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristics	53.85%
Motif_522	E2Fa	The E2F family of transcription factors from Arabidopsis thaliana. Novel and conserved components of the retinoblastoma/E2F pathway in plants	53.85%
Motif_202	OPAQUE2ZM22Z	Opaque-2 (O2) target sequence in maize 22- and 27-kD zein promoters; ACGT motif; Related to seed expression; O2 target sequence; Gene: maize 22-kD zein; transacting factor: 02	53.85%
Motif_508	CEREGLUBOX1PSLEGA	cereal glutenin box in pea legumin gene (legA); sequence homologous to the cereal glutenin gene control element (-300 element)	53.85%
Motif_507	ABASEED1	ABA regulation; seed expression; Gene: carrot Dc3; Transacting factor: bZIP; Contains ACGT motif	53.85%
Motif_665	ACEATCHS	ACEAtCHS (ACGT containing element) found in the LRU (light-responsive unit) in Arabidopsis chalcone synthase (CHS) gene promoter; Required for UV-B and UV-1/blue light responsiveness; Transcriptional repression by AtMYB4 controls production of UV-protecting sun screens in Arabidopsis; AtMYB4 mutant shows enhanced levels of sinapate ester in leaves and tolerance of UV-B irradiation; AtMYB4 expression is downregulated by exposure to UV-B light; Identification of UV/blue light-response elements in the Arabidopsis thaliana chalcone synthase promoter using a homologous protoplast transient expression system	53.85%
Motif_211	ABREMOTIFIOSRAB16B	Motif I found in the promoter of rice rab16B gene; Motif I and motif III are both required for ABA responsiveness; However, each can substitute for the other	53.85%
Motif_82	ACGTSEED3	ACGT motif related to seed expression; Gene: synthetic; wild-type motif (Iwt) containing G-box-related sequence; transacting factor: bZIP; A tobacco bZip transcription activator (TAF-1) binding site	53.85%
Motif_571	GBOXSORBCS1	G-box found in the spinach RBCS-1 gene promoter; Located between -219 and -212; G-box trimer confers relatively high level expression in roots	53.85%
Matrix_401	MYB55	Not Available	53.83%
Matrix_173	ZAP1	Not Available	53.06%
Matrix_153	AP2	Not Available	52.12%
Motif_90	GT1MOTIFPSRBCS	GT-1 motif; Consensus sequence of rbcS BOX II, III, II', III'; GT-1 box; 5' upstream region (-151) of pea (P.s.) rbcS gene; binding with trans factor GT-1; See GT1CORE	52.06%
Matrix_367	REM1	Not Available	52.02%
Matrix_424	MYB59	Not Available	52.02%
Matrix_108	PIF4	Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responses	51.87%
Motif_232	ABADESI1	Responsive to ABA and desiccation; Motif I of rice rab16A-D (initially called rab-21); Expressed in seeds late during embryogenesis; Induced by ABA and osmotic stress in vegetative tissues; Contains ACGT motif; transacting factor: TAF-1	51.03%
Matrix_390	GT-1	Not Available	50.86%
Motif_165	AP3SV40	AP-3 binding site consensus sequence in enhancer regions of SV40, MMTV, MLV, IL2	50.00%