PLAZA 3.0 Dicots : Binding Sites

Binding sites with simlar sequences

Binding site: Motif_173
Name: HSE
Description: HSE (heat shock response element); consensus sequence found in the promoter regions of heat shock protein genes; HSF binding site; HsfA3, a new member of the Hsf (heat stress transcription factor) family; was isolated by yeast two-hybrid screening, using HsfA1 as a bait; HsfA3 is a single copy gene with all conserved sequence elements characteristic of a heat stress transcription factor

Sequence: CTNGAANNTTCNAG
Positional Weight Matrix

Minimum similarity percentage

Binding site	Name	Description	Similarity
Motif_30	HSELIKENTACIDICPR1	HSE-like motif in -56 region of acidic PR1 gene of tobacco; not found in basic PR1 gene	84.11%
Motif_425	ANAC013; ANAC016; ANAC017; ANAC053; ANAC078	A membrane-bound NAC transcription factor is a regulator of mitochondrial retrograde regulation involved in oxidative stress responses in Arabidopsis thaliana	67.42%
Matrix_178	HSFB2A	Not Available	64.59%
Motif_472	WRKY18	Identification of genes encoding receptor-like protein kinases as possible targets of pathogen- and salicylic acid-induced WRKY DNA-binding proteins in Arabidopsis	62.68%
Motif_671	GATA-1	Arabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristics	62.68%
Motif_115	HSEs binding site motif	Arabidopsis and the heat stress transcription factor world: how many heat stress transcription factors do we need?	62.68%
Matrix_21	HSFC1	Not Available	61.95%
Motif_143	VND6	Arabidopsis VASCULAR-RELATED NAC-DOMAIN6 directly regulates the genes that govern programmed cell death and secondary wall formation during xylem differentiation	61.08%
Matrix_429	KAN4	Not Available	58.50%
Motif_257	BOX1PSGS2	Box 1 element in pea glutamine synthetase (GS2) gene; An element in a 33-bp AT-rich sequence (box 1) of the 5' end of a GS2 promoter; Located at -837 to -827 of pea GS2; Multimer of box 1 element was used to isolate a cDNA encoding an AT-rich DNA binding protein (ATBP-1)	58.31%
Motif_29	GATA-1	Arabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristics	55.54%
Motif_482	GARE2	Putative gibberellin responsive element; Consensus sequence of GA inducible alpha-amylase genes from rice, barley and wheat	54.21%
Motif_677	AGL22; AGL20; AGL24	Regulation of floral patterning by flowering time genes	53.93%
Motif_147	HDMOTIFPCPR2	HD (homeodomain) protein target site in parsley pathogenesis-related protein 2 (PR2); A potential in vivo target site	53.93%
Motif_294	HSRENTHSR203J	HSRE(HSR203 responsive element) in tobacco responsible for the marked induction of the HSR203J gene during the HR (hypersensitive response); HSR203J is specifically activated during the early steps of incompatible plant/pathogen interactions	53.93%
Motif_581	AP1 BS in AP3	The CArG boxes in the promoter of the Arabidopsis floral organ identity gene APETALA3 mediate diverse regulatory effects	53.93%
Motif_343	SV40ENHANCOREELEMENT	SV40 enhancer core element	53.93%
Motif_550	MRE motif in CHS	MREAtCHS (MRE = Myb Recognition Element) found in the LRU (light-responsive unit) in Arabidopsis chalcone synthase (CHS) gene promoter; Required for UV-B and UV-A/blue light responsiveness;Identification of UV/blue light-response elements in the Arabidopsis thaliana chalcone synthase promoter using a homologous protoplast transient expression system	53.93%
Matrix_353	HAT5	Not Available	53.66%
Matrix_421	GLK1	Not Available	53.21%
Motif_298	GMHDLGMVSPB	Binding site of the soybean homeodomein leucine zipper proteins (GmHdl56, GmHdl57); Found in the phosphate response domain of the soybean VspB promoter; Located between -536 and -527; VspB encodes vacuolar glycoprotein acid phosphatase that serve as vegetative storage protein	52.77%
Motif_610	GATA-2; GATA-4; GATA-3; GATA-1	Arabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristics	52.77%
Matrix_499	ARR18	Not Available	52.29%
Motif_506	IDRSZMFER1	IDRS (Iron-Dependent Regulatory Sequence) found in maize and Arabidopsis ferritin genes (Fer1); IDRS is responsible for transcriptional repression of ZmFer1 gene under low iron supply conditions; IDRS is not involved in the Fe-regulated expression of the AtAPX1 gene	52.21%
Motif_494	TOPOISOM	Topoisomerase cleavage site consensus sequence; Motif found in SAR (scaffold attachment region; or matrix attachment region, MAR)	52.21%
Matrix_471	KAN4	Not Available	52.01%
Matrix_228	TGA2	Not Available	51.21%
Motif_93	RGATAOS	R-GATA (GATA motif binding factor) binding site; GATA motif is found at -143 to -135 of RTBV promoter; GATA motif is required for phloem-specific gene expression of Rice Tungro Bacilliform Virus (RTBV); See also RNFG1OS, RNFG2OS, and ABFOS	51.16%
Motif_588	TL1ATSAR	TL1, a consensus sequence overrepresented in the promoter regions of all 13 NPR1-responsive ER-resident genes surveyed; NPR1 is Nonexpressor of pathogenesis-related genes 1, also known as NIM1	51.16%
Motif_681	TDBA12NTCHN50	TDBA12 binding site found in tobacco basic class I chitinase gene (CHN50); Elicitor response element; TDBA12 belongs to WRKY proteins that appear to be unique to plants; TDBA12 is activated by TMV infection in resistant tobacco plant and by plant defense signal molecule SA	51.16%
Motif_528	ABI5	The homologous ABI5 and EEL transcription factors function antagonistically to fine-tune gene expression during late embryogenesis	51.16%
Motif_639	WRKY18	Identification of genes encoding receptor-like protein kinases as possible targets of pathogen- and salicylic acid-induced WRKY DNA-binding proteins in Arabidopsis	51.16%
Motif_637	SARD1; CBP60g	Control of salicylic acid synthesis and systemic acquired resistance by two members of a plant-specific family of transcription factors	51.16%
Motif_598	SORLIP3AT	one of Sequences Over-Represented in Light-Induced Promoters (SORLIPs) in Arabidopsis; Computationally identified phyA-induced motifs; See also all SORLIPs and also all SORLREPs; Identification of key promoter motifs involved in the network of light-regulated gene expression by combined analysis of genomic sequence and microarray data	51.16%
Motif_680	HY5	Arabidopsis bZIP protein HY5 directly interacts with light-responsive promoters in mediating light control of gene expression	51.16%
Motif_38	RSEPVGRP1	RSE (root-specific element) of bean GRP1.8 gene; consensus sequence	51.16%
Motif_255	B2GMAUX28	B2; DNase I protected sequence found in the soybean auxin responsive gene, Aux28, promoter; Located between -310 and -301; Contains a TGACGACA sequence which is similar to TGACGT/C sequence found in Ocs, CaMV35S and histone H3 promoter; Contains as-1 motif	51.16%
Motif_23	14BPATERD1	14 bp region (from -599 to -566) necessary for expression of erd1 (early responsive to dehydration) in dehydrated Arabidopsis	51.16%
Motif_9	RBENTGA3	rbe (RSG binding element) found in the tobacco GA3 gene promoter; Binding site of RSG (Repression of shoot growth); RSG is a bZIP transcriptional activator; RSG regulates the morphology of plants by controlling the endogenous amounts of GAs	51.16%
Matrix_404	OBP4	Not Available	50.98%
Matrix_440	LFY	Not Available	50.88%
Matrix_458	MGP; AT1G14580; AtIDD7; AtIDD5; AtIDD4; AtIDD12; JKD; AT5G66730	Not Available	50.84%
Matrix_161	MYBC1; AT3G10760; LUX; AT5G05090; AT5G59570	Not Available	50.42%
Matrix_215	ARF1	ARF1, a transcription factor that binds to auxin response elements	50.41%
Matrix_89	SOC1	Genome-wide identification of SOC1 and SVP targets during the floral transition in Arabidopsis	50.24%
Matrix_149	PI	Not Available	50.02%