PLAZA 3.0 Dicots : Binding Sites

Binding sites with simlar sequences

Binding site: Matrix_352
Name: LEC2
Description: Not Available

Positional Weight Matrix

Minimum similarity percentage

Binding site	Name	Description	Similarity
Matrix_66	AtLEC2	Genes directly regulated by LEAFY COTYLEDON2 provide insight into the control of embryo maturation and somatic embryogenesis	78.76%
Matrix_183	BES1	A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana	70.49%
Matrix_135	ABI3	Not Available	69.67%
Matrix_79	FUS3	Not Available	69.29%
Motif_669	FUS3; ABI3	Gene regulation during late embryogenesis: the RY motif of maturation-specific gene promoters is a direct target of the FUS3 gene product	68.91%
Matrix_420	ANAC58	Not Available	68.48%
Matrix_333	GATA3	Not Available	68.40%
Matrix_12	EIN3; EIL2	Not Available	67.00%
Matrix_174	ZAT2	Not Available	65.76%
Matrix_153	AP2	Not Available	65.70%
Matrix_472	ZN_C2_H2	Not Available	65.37%
Matrix_70	GATA26	Not Available	64.98%
Motif_518	SPHCOREZMC1	Core of Sph element; Core motif of Sph element in maize C1 gene to which maize VP1 (viviparous 1) protein binds; VP1-responsive element; see RYREPEAT4; VP1 gene is specifically required for expression of the maturation program in seed development; VP1 is a novel transcription factor possibly involved in potentiation of a seed-specific hormone response	64.96%
Matrix_438	AtbZIP63	Not Available	64.47%
Motif_675	FUS3; ABI3	Gene regulation during late embryogenesis: the RY motif of maturation-specific gene promoters is a direct target of the FUS3 gene product	64.29%
Matrix_263	WRKY33; WRKY19; WRKY32	Not Available	63.86%
Matrix_3	WRKY48	Not Available	63.86%
Matrix_186	FHY3	Not Available	63.68%
Motif_367	FUS3	Gene regulation during late embryogenesis: the RY motif of maturation-specific gene promoters is a direct target of the FUS3 gene product	62.88%
Matrix_75	WRKY29	Not Available	62.86%
Motif_456	FUS3; ABI3	Gene regulation during late embryogenesis: the RY motif of maturation-specific gene promoters is a direct target of the FUS3 gene product	62.70%
Matrix_296	GBF2	Not Available	62.46%
Matrix_143	GATA14; GATA6; GATA5	Not Available	62.32%
Matrix_53	MYC3	Not Available	62.30%
Matrix_323	BIM3	Not Available	62.29%
Matrix_446	LBD16	Not Available	62.13%
Matrix_306	TGA1	TGA1 and G-box binding factors: two distinct classes of Arabidopsis leucine zipper proteins compete for the G-box-like element TGACGTGG	62.01%
Matrix_369	AT2G18300	Not Available	61.99%
Matrix_509	LEC2	Not Available	61.95%
Matrix_300	bZIP68; bZIP16	Not Available	61.89%
Matrix_169	E2F1	Not Available	61.82%
Matrix_158	AT1G03040; LRL1; UNE12; LRL2; LRL3	Not Available	61.81%
Matrix_23	ANAC46	Not Available	61.76%
Matrix_120	BEE2	Not Available	61.76%
Matrix_330	MYC2; TT8	Not Available	61.48%
Matrix_17	WRKY22	Not Available	61.36%
Matrix_465	MYC4	Not Available	61.29%
Matrix_200	PIL5; AT4G28790; AT4G28800; AT4G28811; AT4G28815	Not Available	61.28%
Matrix_389	ILR3	Not Available	61.23%
Matrix_406	ATERF-7	Not Available	61.16%
Matrix_449	BIM2	Not Available	61.07%
Matrix_52	ZAT18	Not Available	60.81%
Matrix_108	PIF4	Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responses	60.74%
Matrix_370	WRKY50; WRKY51	Not Available	60.61%
Matrix_197	NAP	Not Available	60.36%
Matrix_415	WRKY27	Not Available	60.11%
Matrix_505	GATA8	Not Available	60.03%
Matrix_453	EIL3	Not Available	60.03%
Motif_414	ABI3	Gene regulation during late embryogenesis: the RY motif of maturation-specific gene promoters is a direct target of the FUS3 gene product	59.92%
Matrix_380	ATMYR1	Not Available	59.87%
Matrix_384	ATWRKY17	Not Available	59.83%
Matrix_469	NAC041; NAC083	Not Available	59.83%
Matrix_457	TGA2	Not Available	59.78%
Matrix_280	TCP24; TCP1; BRC2; ATTCP18	Not Available	59.61%
Matrix_141	AT3G25990	Not Available	59.57%
Matrix_151	ASIL1	Not Available	59.55%
Matrix_462	ATERF-8	Not Available	59.44%
Motif_119	ABI3	Gene regulation during late embryogenesis: the RY motif of maturation-specific gene promoters is a direct target of the FUS3 gene product	59.39%
Matrix_308	INO	Not Available	59.27%
Matrix_55	PIF3	Not Available	59.27%
Matrix_188	SPL4	Not Available	59.17%
Matrix_397	GT2L	Not Available	59.14%
Matrix_456	bZIP60	Not Available	59.11%
Matrix_431	ATHB21; HB-3	Not Available	59.09%
Matrix_116	ANAC55	Not Available	59.05%
Matrix_102	WRKY21	Not Available	58.98%
Matrix_328	AT1G76580	Not Available	58.85%
Matrix_427	ZAT14	Not Available	58.71%
Matrix_202	WRKY71; WRKY28; WRKY8	Not Available	58.68%
Matrix_207	WRKY10; WRKY57; AT2G44745; ATWRKY13; WRKY49	Not Available	58.48%
Motif_415	RBCSGBOXPS	rbcS G-box; 5'upstream region (-211) of pea rbcS gene; binding with trans factor GBF (CG-1); Light-responsiveness	58.42%
Matrix_259	AT1G50680; AT1G51120	Not Available	58.40%
Matrix_37	GATA27	Not Available	58.36%
Matrix_59	AT4G00238; AT4G00250	Not Available	58.25%
Matrix_154	AT1G22190; AT1G36060; AT1G64380; RAP2.4; AT2G20880; AT2G22200; AT4G13620; AT4G28140; AT4G39780; AT5G65130	Not Available	58.22%
Matrix_93	YAB5	Not Available	58.10%
Matrix_101	ERF5	Not Available	58.04%
Matrix_284	KAN2; KAN3; KAN; KAN4	Not Available	57.82%
Matrix_399	TGA1	Not Available	57.65%
Motif_22	RYREPEATLEGUMINBOX	RY repeat (CATGCAY) or legumin box found in seed-storage protein genes in legume such as soybean	57.57%
Matrix_302	HAT1; HAT2	Not Available	57.33%
Matrix_84	AtGRF6	Not Available	57.31%
Matrix_520	ARR14	Not Available	57.23%
Matrix_395	AT1G19210; ORA47; AT4G31060; AT5G21960	Not Available	57.22%
Matrix_256	IXR11; KNAT5; KNAT4; KNAT3	Not Available	57.07%
Matrix_181	Dof5.7	Not Available	57.06%
Matrix_264	ATAREB1	Not Available	57.01%
Matrix_220	WRKY18	Not Available	56.91%
Matrix_477	RAV1	Not Available	56.89%
Matrix_34	RAV1_2	RAV1, a novel DNA-binding protein, binds to bipartite recognition sequence through two distinct DNA-binding domains uniquely found in higher plants	56.89%
Matrix_467	RAV1	Not Available	56.89%
Matrix_104	PI	Not Available	56.84%
Motif_263	RYREPEATVFLEB4; ABI3	RY repeat motif; quantitative seed expression; Gene: Vicia faba LeB4; Soybean glycinin (Gy2); other dicot and monocot seed protein genes; Sph box found in rice Osem gene promoter; Binding site of Arabidopsis B3-domain-containing transcription factor FUS3; TRAB1, bZIP transcription factor, interacts with VP1 and mediates abscisic acid-induced transcritption; FUS3 protein physically interact with two RY elements present in the AtGA3ox promoter;RY repeats are conserved in the 5 prime-flanking region of legume seed protein genes. Gene regulation during late embryogenesis: the RY motif of maturation-specific gene promoters is a direct target of the FUS3 gene product	56.83%
Matrix_271	AT3G16350	Not Available	56.83%
Matrix_110	ATABI4; AT3G57600	Not Available	56.82%
Matrix_287	ERF2	Not Available	56.64%
Matrix_268	EMB2749; VND5; SMB; VND1; ANAC076; NAC101; ANAC105	Not Available	56.59%
Matrix_452	MYB46	Not Available	56.59%
Motif_511	RYREPEATGMGY2	RY repeat motif (CATGCAT); Present in the 5' region of the soybean glycinin gene (Gy2)	56.57%
Matrix_377	AT1G75490; DREB2C; AT2G40350; AT5G18450	Not Available	56.56%
Matrix_418	KNAT6; KNAT2	Not Available	56.49%
Matrix_192	FHY3/FAR1	Not Available	56.40%
Matrix_221	SPL7	Not Available	56.30%
Matrix_115	AGL15	Not Available	56.30%
Matrix_206	CUC1; ANAC100	Not Available	56.29%
Matrix_273	ANAC55	Not Available	56.24%
Matrix_6	AT1G70000	Not Available	56.18%
Matrix_41	anac058	Not Available	56.05%
Matrix_373	E2FE	Not Available	56.05%
Matrix_423	AT3G04030	Not Available	56.03%
Matrix_307	RGL2; RGL3	Not Available	56.03%
Matrix_106	AT5G47390	Not Available	55.93%
Matrix_56	BZIP17; BZIP28; BZIP49	Not Available	55.84%
Matrix_155	RAP2.6; ERF110; ABR1	Not Available	55.79%
Matrix_450	SPL7	Not Available	55.76%
Matrix_329	WRKY12	Not Available	55.75%
Matrix_249	WRKY11	Not Available	55.75%
Matrix_489	RAV1	Not Available	55.68%
Matrix_500	WRKY43	Not Available	55.67%
Motif_73	AtWER	Regulation of CAPRICE transcription by MYB proteins for root epidermis differentiation in Arabidopsis	55.63%
Matrix_171	LBD3; LBD4	Not Available	55.60%
Matrix_504	WRKY40	Not Available	55.48%
Matrix_367	REM1	Not Available	55.42%
Matrix_413	RAV1	Not Available	55.41%
Matrix_298	RAV1	Not Available	55.41%
Matrix_355	ERF10; ERF11	Not Available	55.40%
Matrix_227	AT1G64620	Not Available	55.34%
Matrix_33	SPL11; SPL10; SPL2	Not Available	55.31%
Matrix_195	GATA2; GATA4	Not Available	55.27%
Matrix_80	BIM1	Not Available	55.25%
Matrix_316	WRKY15; WRKY39; WRKY7; WRKY74	Not Available	55.25%
Matrix_351	HAT9; ATHB-4; ATHB2; HAT22; HAT14	Not Available	55.23%
Matrix_217	BES1	A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana	55.21%
Matrix_234	RAP2.3	Not Available	55.19%
Matrix_146	ORA47	Not Available	55.04%
Matrix_343	AT2G33710	Not Available	55.03%
Matrix_463	HAT3.1	Not Available	54.95%
Motif_356	S2FSORPL21	S2F binding site (S2 site) in spinach RPL21 gene encoding the plastid ribosomal protein L21; S2 site (CATACAWW) is conserved in promoter region of many nuclear genes encoding plastid proteins; Leaf-specific, light-independent regulatory element; S2 site is related to but different from the light-responsive GT-1 binding site	54.89%
Matrix_293	WRKY38	Not Available	54.88%
Matrix_180	SPL1	Not Available	54.83%
Matrix_326	AT5G07310; Rap2.6L; AT5G61890	Not Available	54.77%
Matrix_454	AT1G77200; ATERF38; AT4G16750; AT5G52020	Not Available	54.64%
Motif_577	GRAZMRAB28	GRA; GC-rich rab activator; Found in the promoter of ABA responsive rab28 gene from maize; Similar (seven of 12 bases) to the GRA element from the maize rab17 promoter (GRAZMRAB17); Found at -138 to -130	54.63%
Matrix_203	GATA9; GATA12	Not Available	54.61%
Matrix_129	ABF1	Not Available	54.58%
Matrix_515	ddf2; ATCBF3; CBF1; CBF4	Not Available	54.51%
Matrix_444	AT1G19485; AT4G17950	Not Available	54.51%
Matrix_502	AT3G13040	Not Available	54.49%
Matrix_46	AT4G21895	Not Available	54.48%
Matrix_236	CCA1	Not Available	54.35%
Matrix_26	ATMYB3; MYB24	Not Available	54.34%
Matrix_77	PRR5	Not Available	54.19%
Matrix_317	AT1G06070; AT2G31370; AT2G40620	Not Available	54.04%
Matrix_272	DEAR4	Not Available	53.95%
Motif_117	RYREPEAT4	RY repeat motif; Sph element; seed expression; ABA; Gene: maize C1, wheat Em, rice rab16A, maize Rab17; Transacting factor: VP1 (maize C1); See RYREPEAT2; The RY sequence motif does not play a major role in VP1 or ABA regulation of Em gene in protoplast; VP1 gene is specifically required for expression of the maturation program in seed development	53.93%
Matrix_408	GATA12	Not Available	53.93%
Matrix_470	WRKY18	Not Available	53.93%
Matrix_226	GATA1	Not Available	53.90%
Matrix_341	HMGA	Not Available	53.87%
Matrix_10	STY1	Not Available	53.84%
Matrix_61	ATCBF3	Not Available	53.83%
Matrix_440	LFY	Not Available	53.78%
Matrix_497	AP3	Not Available	53.77%
Matrix_78	AT3G45610	Not Available	53.62%
Matrix_81	YAB1	Not Available	53.58%
Matrix_109	GBF3	Not Available	53.57%
Matrix_314	WRKY65; WRKY14; WRKY35; WRKY69; WRKY16; ATWRKY52	Not Available	53.56%
Matrix_374	AT5G07580; AT5G61590	Not Available	53.50%
Matrix_274	EDF3	Not Available	53.47%
Matrix_382	AT3G04850	Not Available	53.46%
Matrix_483	ICU4	Not Available	53.26%
Matrix_142	ZFP8	Not Available	53.22%
Matrix_14	ZCW32; AT5G62610	Not Available	53.17%
Matrix_113	ABI5	Not Available	53.17%
Matrix_265	NGA3	Not Available	53.15%
Matrix_193	RAV1	Not Available	53.15%
Matrix_312	ARF11; MP; ARF6; IAA21; ARF8; ARF4	Not Available	53.13%
Matrix_376	WRKY45	Not Available	53.01%
Matrix_85	SPL5	Not Available	52.86%
Matrix_99	DOF4.7	Not Available	52.82%
Matrix_50	ATERF14; AT5G43410	Not Available	52.81%
Matrix_128	TGA2	Not Available	52.81%
Matrix_168	AHL25	Not Available	52.78%
Matrix_447	RVE1	Not Available	52.76%
Matrix_71	ATHB7	Not Available	52.58%
Motif_395	RHE_element	Functional Conservation of a Root Hair Cell-Specific cis-Element in Angiosperms with Different Root Hair Distribution Patterns	52.56%
Motif_544	CACGCAATGMGH3	Sequence found in D4 element in Soybean GH3 gene promoter; Showed constitutive activity with TGTCTC element; Confers auxin inducibility; Binding site of nuclear protein	52.55%
Matrix_439	AP3	Not Available	52.44%
Matrix_283	GATA15; GATA17; AT4G16141; GATA22; GATA23; GATA16; GNC	Not Available	52.42%
Matrix_87	AT1G19000	Not Available	52.40%
Matrix_277	RAP2.6	Not Available	52.40%
Matrix_212	ATHB-12	Not Available	52.40%
Motif_553	BOX2PSGS2	Box 2 in glutamine synthetase (GS2) gene in pea; Repeated in tandem with a partial palindrome located between the repeats; Located at ca. -300 of pea GS2	52.38%
Matrix_363	RAP2.3	Not Available	52.37%
Matrix_499	ARR18	Not Available	52.33%
Matrix_187	CDC5	Not Available	52.33%
Matrix_349	CDC5	Not Available	52.33%
Matrix_393	REM1	Not Available	52.25%
Matrix_285	DDF1	Not Available	52.25%
Matrix_38	SPL14	Not Available	52.19%
Matrix_175	Dof5.7	Not Available	52.15%
Matrix_311	TGA1	Not Available	52.13%
Matrix_331	GBF1	Not Available	52.12%
Matrix_416	ASL5	Not Available	52.02%
Matrix_357	WRKY61; WRKY6; WRKY9; WRKY36; WRKY47; WRKY42; WRKY31; WRKY72	Not Available	52.01%
Matrix_196	TCP20; AT5G41030	Not Available	51.98%
Matrix_286	GATA7	Not Available	51.92%
Matrix_190	ATERF1	Not Available	51.86%
Motif_390	GLUTEBOX2OSGT2	Box II of rice glutelin Gt2 gene family; nuclear factor binding site	51.83%
Matrix_161	MYBC1; AT3G10760; LUX; AT5G05090; AT5G59570	Not Available	51.82%
Matrix_139	OBF5	Not Available	51.80%
Matrix_218	TIFY2B; TIFY1	Not Available	51.79%
Matrix_240	AT4G29000	Not Available	51.77%
Motif_412	SORLREP5AT	one of Sequences Over-Represented in Light-Repressed Promoters (SORLREPs) in Arabidopsis; Computationally identified phyA-repressed motifs; See also all SORLREPs and all SORLIPs; Identification of key promoter motifs involved in the network of light-regulated gene expression by combined analysis of genomic sequence and microarray data	51.77%
Motif_56	O2F3BE2S1	opaque-2 recognition site F3 in Bertholletia excelsa (Brazil nut tree) 2S storage protein gene (be2S1); O2 protein binds to F1, F2 and F3 sequences of be2S1 promoter; F3 is hybrid of A/G box	51.73%
Matrix_162	AtPHR1	Not Available	51.71%
Matrix_407	AP1	Not Available	51.70%
Matrix_57	WIN1; SHN3; SHN2	Not Available	51.66%
Matrix_177	ADOF2	Not Available	51.66%
Matrix_199	AT1G69170; SPL9; SPL15; SPL13A; SPL13B	Not Available	51.64%
Matrix_473	RRTF1	Not Available	51.64%
Matrix_260	CAMTA3	Not Available	51.63%
Matrix_269	FHY3/FAR1	Not Available	51.59%
Matrix_241	HB-1; AT5G44180	Not Available	51.56%
Matrix_148	WRKY60	Not Available	51.53%
Matrix_476	bHLH115; bHLH34	Not Available	51.47%
Matrix_495	HD-GL2-1; ANL2	Not Available	51.46%
Matrix_91	CRF3	Not Available	51.46%
Matrix_22	BES1	A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana	51.44%
Matrix_83	PRR5	Not Available	51.42%
Matrix_224	ERF1	Not Available	51.36%
Matrix_518	AT2G21230	Not Available	51.35%
Motif_310	ANAERO3CONSENSUS	One of 16 motifs found in silico in promoters of 13 anaerobic genes involved in the fermentative pathway (anaerobic set 1); Arbitrary named ANAERO3CONSENSUS by the PLACEdb curator	51.30%
Motif_107	O2F2BE2S1	opaque-2 recognition site F2 in Bertholletia excelsa (Brazil nut tree) 2S storage protein gene (be2S1); O2 protein binds to F1, F2 and F3 sequences of be2S1 promoter; F2 is a new O2-binding sequence related to the O2 target sites of the Coix alpha-coxin, the maize b-32 genes and the AP-1 pseudopalindrome	51.27%
Matrix_419	TGA9; PAN; TGA6; bZIP65	Not Available	51.17%
Matrix_475	AT5G64220	Not Available	51.17%
Motif_640	RYREPEATBNNAPA	RY repeat found in RY/G box (the complex containing the two RY repeats and the G-box) of napA gene in Brassica napus; Found between -78 and -50; Required for seed specific expression;dist B ABRE mediated transactivation by ABI3 adn ABI3-dependent response to ABA; a tetramer of the composite RY/G complex mediated only ABA-independent transactivation by ABI3; B2 domain of ABI3 is necessary for ABA-independent and ABA-dependent activation through the dist B ABRE	51.11%
Matrix_362	DEAR3	Not Available	51.09%
Matrix_511	AT1G05805; AT1G35460; AT1G51140; AT2G42280; AT2G43140; AT4G09180	Not Available	51.04%
Matrix_396	AP3	Not Available	50.83%
Matrix_44	CUC3; anac046; NAC3; ANAC087; ATNAC6; CUC2	Not Available	50.80%
Motif_325	WRKY18	Identification of genes encoding receptor-like protein kinases as possible targets of pathogen- and salicylic acid-induced WRKY DNA-binding proteins in Arabidopsis	50.75%
Matrix_336	AT5G08520	Not Available	50.73%
Matrix_322	NST3; ANAC015; BRN2	Not Available	50.72%
Matrix_114	EPR1; AT3G10113	Not Available	50.69%
Matrix_137	SPL1; SPL12	Not Available	50.61%
Matrix_9	AT5G04760	Not Available	50.61%
Matrix_247	PIF3	Not Available	50.54%
Motif_495	TRANSINITMONOCOTS	Context sequence of translational initiation codon in monocots	50.53%
Matrix_392	ARR2	Not Available	50.51%
Matrix_404	OBP4	Not Available	50.50%
Matrix_54	AHL20	Not Available	50.49%
Matrix_92	AT1G33760	Not Available	50.47%
Matrix_16	AT3G04450; PHL1	Not Available	50.46%
Matrix_461	ATHB12	Not Available	50.45%
Motif_162	ABRE3HVA22	ABRE3 of barley HVA22 gene; G-box; component of ABA response complex in HVA22 gene; ABA response complex 1(ABRC1)=A3(previously designated ABRE3)+CE1	50.42%
Matrix_255	cdf3	Not Available	50.42%
Matrix_508	APL; AT3G12730; AT3G24120; UNE16	Not Available	50.40%
Matrix_74	LFY	Not Available	50.37%
Matrix_432	AT1G77920	Not Available	50.36%
Motif_288	NONAMERMOTIFTAH3H4	Nonamer motif found in promoter of wheat histone genes H3 and H4	50.35%
Matrix_405	DREB2C	Not Available	50.35%
Motif_94	UP1ATMSD	Up1 motif found in 162 of the 1184 up-regulated genes after main stem decapitation in Arabidopsis	50.31%
Matrix_20	ANAC030; NST1; NAC066	Not Available	50.27%
Matrix_233	MYC3	Not Available	50.27%
Motif_167	SBP-box promoter motif	Molecular characterisation of the Arabidopsis SBP-box genes	50.25%
Matrix_480	BES1	Not Available	50.24%
Matrix_229	CDC5	A cdc5+ homolog of a higher plant, Arabidopsis thaliana	50.15%
Matrix_4	ARR14	Not Available	50.15%
Matrix_119	RRTF1	Not Available	50.11%
Matrix_48	PI	Not Available	50.10%
Matrix_493	AT1G22985; AT1G71130	Not Available	50.01%
Matrix_332	SPT; ALC	Not Available	50.01%
Matrix_378	ATERF1	Not Available	50.00%