| Matrix_142 | ZFP8 | Not Available | | 83.51% |
| Matrix_99 | DOF4.7 | Not Available | | 79.31% |
| Matrix_46 | AT4G21895 | Not Available | | 78.50% |
| Matrix_248 | ZFP5 | Not Available | | 74.46% |
| Matrix_423 | AT3G04030 | Not Available | | 71.09% |
| Matrix_100 | AT1G48610 | Not Available | | 70.59% |
| Matrix_78 | AT3G45610 | Not Available | | 70.40% |
| Matrix_380 | ATMYR1 | Not Available | | 68.85% |
| Matrix_177 | ADOF2 | Not Available | | 68.23% |
| Matrix_37 | GATA27 | Not Available | | 68.13% |
| Matrix_17 | WRKY22 | Not Available | | 68.09% |
| Matrix_308 | INO | Not Available | | 67.85% |
| Matrix_38 | SPL14 | Not Available | | 67.76% |
| Matrix_152 | EIL1; AT5G65100 | Not Available | | 67.61% |
| Matrix_491 | AT1G68670; AT3G25790 | Not Available | | 67.52% |
| Matrix_415 | WRKY27 | Not Available | | 67.24% |
| Matrix_168 | AHL25 | Not Available | | 67.00% |
| Matrix_508 | APL; AT3G12730; AT3G24120; UNE16 | Not Available | | 66.59% |
| Matrix_97 | APRR2 | Not Available | | 66.59% |
| Matrix_84 | AtGRF6 | Not Available | | 66.09% |
| Matrix_112 | TBP2; TFIID-1 | Not Available | | 65.97% |
| Matrix_284 | KAN2; KAN3; KAN; KAN4 | Not Available | | 65.91% |
| Matrix_69 | AT2G03500 | Not Available | | 65.82% |
| Matrix_212 | ATHB-12 | Not Available | | 65.78% |
| Matrix_75 | WRKY29 | Not Available | | 65.45% |
| Matrix_411 | DOF5.6 | Not Available | | 65.43% |
| Matrix_382 | AT3G04850 | Not Available | | 65.36% |
| Matrix_431 | ATHB21; HB-3 | Not Available | | 65.12% |
| Matrix_4 | ARR14 | Not Available | | 65.07% |
| Matrix_259 | AT1G50680; AT1G51120 | Not Available | | 65.02% |
| Matrix_162 | AtPHR1 | Not Available | | 64.99% |
| Matrix_12 | EIN3; EIL2 | Not Available | | 64.98% |
| Matrix_328 | AT1G76580 | Not Available | | 64.92% |
| Matrix_241 | HB-1; AT5G44180 | Not Available | | 64.88% |
| Matrix_202 | WRKY71; WRKY28; WRKY8 | Not Available | | 64.83% |
| Matrix_197 | NAP | Not Available | | 64.82% |
| Matrix_312 | ARF11; MP; ARF6; IAA21; ARF8; ARF4 | Not Available | | 64.75% |
| Matrix_374 | AT5G07580; AT5G61590 | Not Available | | 64.66% |
| Matrix_370 | WRKY50; WRKY51 | Not Available | | 64.61% |
| Matrix_32 | AHL25 | Not Available | | 64.07% |
| Matrix_210 | ARR1 | Not Available | | 64.02% |
| Matrix_114 | EPR1; AT3G10113 | Not Available | | 63.71% |
| Matrix_263 | WRKY33; WRKY19; WRKY32 | Not Available | | 63.69% |
| Matrix_384 | ATWRKY17 | Not Available | | 63.52% |
| Matrix_16 | AT3G04450; PHL1 | Not Available | | 63.51% |
| Matrix_3 | WRKY48 | Not Available | | 63.45% |
| Matrix_336 | AT5G08520 | Not Available | | 63.29% |
| Matrix_96 | TMO6 | Not Available | | 63.22% |
| Matrix_35 | YAB5; YAB3 | Not Available | | 63.07% |
| Matrix_125 | AHL12 | Not Available | | 62.96% |
| Matrix_286 | GATA7 | Not Available | | 62.86% |
| Matrix_231 | HDG2; HDG3; ATML1; HB-7 | Not Available | | 62.85% |
| Matrix_361 | AT1G25550 | Not Available | | 62.55% |
| Matrix_227 | AT1G64620 | Not Available | | 62.50% |
| Matrix_268 | EMB2749; VND5; SMB; VND1; ANAC076; NAC101; ANAC105 | Not Available | | 62.44% |
| Matrix_151 | ASIL1 | Not Available | | 62.20% |
| Matrix_26 | ATMYB3; MYB24 | Not Available | | 62.18% |
| Matrix_102 | WRKY21 | Not Available | | 61.76% |
| Matrix_131 | HDG12; EDT1; GL2; HDG8 | Not Available | | 61.70% |
| Matrix_54 | AHL20 | Not Available | | 61.49% |
| Matrix_280 | TCP24; TCP1; BRC2; ATTCP18 | Not Available | | 61.21% |
| Matrix_324 | AT2G01060 | Not Available | | 61.11% |
| Matrix_207 | WRKY10; WRKY57; AT2G44745; ATWRKY13; WRKY49 | Not Available | | 61.06% |
| Matrix_377 | AT1G75490; DREB2C; AT2G40350; AT5G18450 | Not Available | | 60.91% |
| Matrix_226 | GATA1 | Not Available | | 60.88% |
| Matrix_243 | RAP2.12; RAP2.2 | Not Available | | 60.66% |
| Matrix_44 | CUC3; anac046; NAC3; ANAC087; ATNAC6; CUC2 | Not Available | | 60.60% |
| Matrix_283 | GATA15; GATA17; AT4G16141; GATA22; GATA23; GATA16; GNC | Not Available | | 60.59% |
| Matrix_87 | AT1G19000 | Not Available | | 60.55% |
| Matrix_444 | AT1G19485; AT4G17950 | Not Available | | 60.33% |
| Matrix_59 | AT4G00238; AT4G00250 | Not Available | | 60.28% |
| Matrix_126 | RBE | Not Available | | 60.19% |
| Matrix_70 | GATA26 | Not Available | | 60.13% |
| Matrix_397 | GT2L | Not Available | | 60.00% |
| Matrix_354 | AHL12 | Not Available | | 59.57% |
| Matrix_239 | AT5G04390 | Not Available | | 59.57% |
| Matrix_8 | KAN1 | Not Available | | 59.32% |
| Matrix_81 | YAB1 | Not Available | | 59.17% |
| Matrix_143 | GATA14; GATA6; GATA5 | Not Available | | 59.10% |
| Matrix_185 | AHL25 | Not Available | | 59.10% |
| Matrix_311 | TGA1 | Not Available | | 58.97% |
| Matrix_88 | AHL12 | Not Available | | 58.97% |
| Matrix_220 | WRKY18 | Not Available | | 58.96% |
| Matrix_442 | AT5G62260 | Not Available | | 58.94% |
| Matrix_513 | SOL1; TSO1; TCX2 | Not Available | | 58.85% |
| Matrix_351 | HAT9; ATHB-4; ATHB2; HAT22; HAT14 | Not Available | | 58.84% |
| Matrix_157 | LHY; RVE2 | Not Available | | 58.83% |
| Matrix_519 | ATDOF2.4 | Not Available | | 58.77% |
| Matrix_521 | AHL20 | Not Available | | 58.73% |
| Matrix_188 | SPL4 | Not Available | | 58.70% |
| Matrix_322 | NST3; ANAC015; BRN2 | Not Available | | 58.68% |
| Matrix_379 | RHL41 | Not Available | | 58.64% |
| Matrix_321 | HRD | Not Available | | 58.56% |
| Matrix_503 | AT2G37430; AT3G53600 | Not Available | | 58.46% |
| Matrix_93 | YAB5 | Not Available | | 58.39% |
| Matrix_463 | HAT3.1 | Not Available | | 58.36% |
| Matrix_206 | CUC1; ANAC100 | Not Available | | 58.32% |
| Matrix_141 | AT3G25990 | Not Available | | 58.27% |
| Matrix_333 | GATA3 | Not Available | | 58.09% |
| Matrix_91 | CRF3 | Not Available | | 57.98% |
| Matrix_502 | AT3G13040 | Not Available | | 57.87% |
| Motif_235 | C8GCARGAT | Binding site of plant MADS-domain protein AGL15; CArG motif with a longer A/T-rich core;A variant of CArG motif, with a longer A/T-rich core; Binding site for AGL15 (AGAMOUS-like 15) | | 57.80% |
| Matrix_504 | WRKY40 | Not Available | | 57.77% |
| Matrix_416 | ASL5 | Not Available | | 57.64% |
| Matrix_249 | WRKY11 | Not Available | | 57.63% |
| Matrix_418 | KNAT6; KNAT2 | Not Available | | 57.52% |
| Matrix_493 | AT1G22985; AT1G71130 | Not Available | | 57.50% |
| Matrix_198 | STZ; C2H2; AZF3 | Not Available | | 57.36% |
| Matrix_56 | BZIP17; BZIP28; BZIP49 | Not Available | | 57.31% |
| Matrix_261 | ATERF-1 | Not Available | | 57.24% |
| Matrix_14 | ZCW32; AT5G62610 | Not Available | | 57.05% |
| Matrix_204 | WOX13 | Not Available | | 56.90% |
| Matrix_505 | GATA8 | Not Available | | 56.86% |
| Matrix_85 | SPL5 | Not Available | | 56.81% |
| Matrix_436 | AT3G49930; AZF1 | Not Available | | 56.80% |
| Matrix_296 | GBF2 | Not Available | | 56.64% |
| Matrix_182 | ATHB6 | Not Available | | 56.53% |
| Matrix_195 | GATA2; GATA4 | Not Available | | 56.21% |
| Matrix_193 | RAV1 | Not Available | | 56.15% |
| Matrix_265 | NGA3 | Not Available | | 56.15% |
| Matrix_101 | ERF5 | Not Available | | 56.01% |
| Matrix_500 | WRKY43 | Not Available | | 56.01% |
| Matrix_256 | IXR11; KNAT5; KNAT4; KNAT3 | Not Available | | 56.00% |
| Matrix_163 | AT2G20110 | Not Available | | 55.97% |
| Matrix_274 | EDF3 | Not Available | | 55.95% |
| Matrix_240 | AT4G29000 | Not Available | | 55.85% |
| Matrix_271 | AT3G16350 | Not Available | | 55.70% |
| Matrix_430 | TOE2 | Not Available | | 55.65% |
| Matrix_170 | AT5G47660 | Not Available | | 55.39% |
| Matrix_307 | RGL2; RGL3 | Not Available | | 55.32% |
| Matrix_313 | ATMYB65; MYB33 | Not Available | | 55.20% |
| Matrix_230 | ARR11 | Not Available | | 55.16% |
| Matrix_420 | ANAC58 | Not Available | | 55.10% |
| Matrix_155 | RAP2.6; ERF110; ABR1 | Not Available | | 55.06% |
| Matrix_395 | AT1G19210; ORA47; AT4G31060; AT5G21960 | Not Available | | 55.02% |
| Matrix_489 | RAV1 | Not Available | | 54.70% |
| Matrix_475 | AT5G64220 | Not Available | | 54.69% |
| Matrix_300 | bZIP68; bZIP16 | Not Available | | 54.65% |
| Matrix_483 | ICU4 | Not Available | | 54.59% |
| Matrix_128 | TGA2 | Not Available | | 54.49% |
| Matrix_355 | ERF10; ERF11 | Not Available | | 54.43% |
| Motif_642 | SEF1MOTIF | SEF1 (soybean embryo factor 1) binding motif; sequence found in 5'-upstream region (-640; -765) of soybean beta-conglicinin (7S globulin) gene | | 54.39% |
| Matrix_447 | RVE1 | Not Available | | 54.35% |
| Matrix_166 | TGA4 | Not Available | | 54.30% |
| Matrix_326 | AT5G07310; Rap2.6L; AT5G61890 | Not Available | | 54.26% |
| Motif_16 | -300ELEMENT | Present upstream of the promoter from the B-hordein gene of barley and the alpha-gliadin, gamma-gliadin, and low molecular weight glutenin genes of wheat; See S000001 -300CORE; See S000002 -300MOTIF | | 54.23% |
| Matrix_164 | AT1G02030; AT2G45120; AZF2; AT3G60580 | Not Available | | 54.08% |
| Matrix_287 | ERF2 | Not Available | | 53.90% |
| Matrix_334 | AT3G23230 | Not Available | | 53.78% |
| Matrix_61 | ATCBF3 | Not Available | | 53.73% |
| Matrix_171 | LBD3; LBD4 | Not Available | | 53.70% |
| Matrix_314 | WRKY65; WRKY14; WRKY35; WRKY69; WRKY16; ATWRKY52 | Not Available | | 53.70% |
| Motif_442 | GT2OSPHYA | GT-2 (a rice nuclear protein) binding site in a rice phyA promoter; phyA gene are transcriptionaly repressed in response to light; One of GT elements;The HMG-1/Y protein PF1 stimulates binding of the GT-2 to PHYA gene promoter | | 53.56% |
| Matrix_446 | LBD16 | Not Available | | 53.51% |
| Matrix_454 | AT1G77200; ATERF38; AT4G16750; AT5G52020 | Not Available | | 53.44% |
| Matrix_470 | WRKY18 | Not Available | | 53.36% |
| Matrix_199 | AT1G69170; SPL9; SPL15; SPL13A; SPL13B | Not Available | | 53.35% |
| Matrix_316 | WRKY15; WRKY39; WRKY7; WRKY74 | Not Available | | 53.34% |
| Matrix_63 | ARR10 | Not Available | | 53.22% |
| Matrix_221 | SPL7 | Not Available | | 53.16% |
| Matrix_72 | CDF2 | Not Available | | 53.06% |
| Matrix_260 | CAMTA3 | Not Available | | 53.06% |
| Matrix_335 | HSFB2A | Not Available | | 52.99% |
| Matrix_276 | AT1G01520; AT3G09600; AT4G01280; LCL1; AT5G52660 | Not Available | | 52.83% |
| Matrix_181 | Dof5.7 | Not Available | | 52.73% |
| Matrix_368 | ATWRKY56; WRKY45; WRKY75; WRKY24 | Not Available | | 52.71% |
| Matrix_325 | WRKY4; WRKY3; WRKY58; ATWRKY34; WRKY20; ATWRKY2 | Not Available | | 52.61% |
| Matrix_255 | cdf3 | Not Available | | 52.60% |
| Matrix_427 | ZAT14 | Not Available | | 52.57% |
| Matrix_273 | ANAC55 | Not Available | | 52.52% |
| Matrix_57 | WIN1; SHN3; SHN2 | Not Available | | 52.32% |
| Matrix_317 | AT1G06070; AT2G31370; AT2G40620 | Not Available | | 52.30% |
| Matrix_41 | anac058 | Not Available | | 52.28% |
| Matrix_408 | GATA12 | Not Available | | 52.21% |
| Matrix_279 | HRS1 | Not Available | | 52.18% |
| Motif_83 | CIACADIANLELHC | Region necessary for circadian expression of tomato Lhc gene | | 52.13% |
| Matrix_406 | ATERF-7 | Not Available | | 52.11% |
| Matrix_425 | TIFY2A | Not Available | | 52.09% |
| Matrix_515 | ddf2; ATCBF3; CBF1; CBF4 | Not Available | | 52.03% |
| Motif_94 | UP1ATMSD | Up1 motif found in 162 of the 1184 up-regulated genes after main stem decapitation in Arabidopsis | | 51.96% |
| Matrix_20 | ANAC030; NST1; NAC066 | Not Available | | 51.80% |
| Matrix_235 | WRKY67; WRKY64; WRKY63; WRKY66 | Not Available | | 51.78% |
| Matrix_507 | TCP3 | Not Available | | 51.68% |
| Matrix_487 | AT1G29160 | Not Available | | 51.65% |
| Motif_556 | INTRONUPPER | 5' exon-intron splice junctions of plant introns; Plant intron upper sequence; Consensus sequence for plant introns | | 51.61% |
| Matrix_262 | ATGRP2B; CSDP2 | Not Available | | 51.47% |
| Motif_361 | SORLREP4AT | one of Sequences Over-Represented in Light-Repressed Promoters (SORLREPs) in Arabidopsis; Computationally identified phyA-repressed motifs; Common in circadian-regulated promoters; Identification of key promoter motifs involved in the network of light-regulated gene expression by combined analysis of genomic sequence and microarray data | | 51.24% |
| Matrix_289 | WRKY25 | Not Available | | 51.16% |
| Matrix_53 | MYC3 | Not Available | | 51.09% |
| Matrix_390 | GT-1 | Not Available | | 51.04% |
| Matrix_512 | HAT3 | Not Available | | 51.03% |
| Matrix_462 | ATERF-8 | Not Available | | 50.96% |
| Matrix_350 | ARR14 | Not Available | | 50.89% |
| Matrix_389 | ILR3 | Not Available | | 50.79% |
| Matrix_175 | Dof5.7 | Not Available | | 50.76% |
| Matrix_391 | AHL20 | Not Available | | 50.64% |
| Matrix_80 | BIM1 | Not Available | | 50.59% |
| Matrix_201 | AT1G74840 | Not Available | | 50.56% |
| Matrix_319 | TEM1 | Not Available | | 50.51% |
| Motif_658 | GT1CONSENSUS | Consensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expression | | 50.49% |
| Matrix_421 | GLK1 | Not Available | | 50.38% |
| Motif_198 | CARGATCONSENSUS | CArG consensus sequence found in the promoter of Arabidopsis SOC1 which is the MADS-box flowering-time gene; FLC is a component of the vernalization (low-temperature) pathway binds directly to this site and blocks transcriptional activation of SOC1 by CONSTANS (CO) | | 50.21% |
| Matrix_494 | OBP4 | Not Available | | 50.18% |
| Matrix_392 | ARR2 | Not Available | | 50.14% |
| Motif_123 | GT-1 | Molecular dissection of GT-1 from Arabidopsis | | 50.09% |
Expansion plot
Gene family finder
Ks-graphs
Skyline plot
Synteny plot
WGDotplot
Functional clusters
WGMapping
BLAST
Workbench