PLAZA 3.0 Dicots : Binding Sites

Binding sites with simlar sequences

Binding site: Matrix_31
Name: SPL1
Description: Not Available

Positional Weight Matrix

Minimum similarity percentage

Binding site	Name	Description	Similarity
Matrix_450	SPL7	Not Available	78.36%
Matrix_180	SPL1	Not Available	75.71%
Matrix_199	AT1G69170; SPL9; SPL15; SPL13A; SPL13B	Not Available	74.26%
Matrix_307	RGL2; RGL3	Not Available	73.25%
Matrix_85	SPL5	Not Available	70.74%
Matrix_221	SPL7	Not Available	69.76%
Matrix_188	SPL4	Not Available	69.07%
Matrix_33	SPL11; SPL10; SPL2	Not Available	68.33%
Motif_161	SPL7; SPL4	A novel zinc-binding motif revealed by solution structures of DNA-binding domains of Arabidopsis SBP-family transcription factors	67.01%
Matrix_137	SPL1; SPL12	Not Available	66.29%
Motif_674	SPL4; SPL1; SPL5	Molecular characterisation of the Arabidopsis SBP-box genes. Gene,A novel zinc-binding motif revealed by solution structures of DNA-binding domains of Arabidopsis SBP-family transcription factors	65.02%
Matrix_492	ETT	Not Available	63.61%
Matrix_209	RAP2.6	Not Available	62.75%
Motif_568	MYB98	MYB98 positively regulates a battery of synergid-expressed genes encoding filiform apparatus localized proteins	61.93%
Motif_53	ABREA2HVA1	A2 of ABRC3; ABRC3 (ABA response complex 3) of HVA1 consists of CE3 and A2; ABA responsive element; stress response; Found in barley HVA1 gene encoding a class 3 late embryogenesis-abundant (Lea) protein; ABRC1 OF HVA22 consists of CE1 and A3	61.71%
Matrix_299	PFG3	Not Available	61.67%
Matrix_367	REM1	Not Available	61.00%
Matrix_285	DDF1	Not Available	59.71%
Matrix_388	SNZ; SMZ; TOE2	Not Available	59.40%
Matrix_448	ATERF6	Not Available	58.74%
Matrix_493	AT1G22985; AT1G71130	Not Available	58.67%
Matrix_5	AT5G51190; ERF104	Not Available	58.66%
Motif_275	AtbZIP1	The arabidopsis bZIP1 transcription factor is involved in sugar signaling, protein networking, and DNA binding	58.11%
Matrix_469	NAC041; NAC083	Not Available	57.97%
Motif_566	AREB1; AREB2	Interaction between two cis-acting elements, ABRE and DRE, in ABA-dependent expression of Arabidopsis rd29A gene in response to dehydration and high-salinity stresses	57.79%
Matrix_197	NAP	Not Available	57.71%
Motif_211	ABREMOTIFIOSRAB16B	Motif I found in the promoter of rice rab16B gene; Motif I and motif III are both required for ABA responsiveness; However, each can substitute for the other	57.64%
Motif_429	MYB98	MYB98 positively regulates a battery of synergid-expressed genes encoding filiform apparatus localized proteins	57.63%
Matrix_504	WRKY40	Not Available	57.45%
Matrix_415	WRKY27	Not Available	57.43%
Matrix_11	TRFL5	Not Available	57.17%
Matrix_91	CRF3	Not Available	57.13%
Matrix_506	DRNL; ATERF-4	Not Available	57.11%
Matrix_463	HAT3.1	Not Available	56.90%
Matrix_433	ATERF1	Not Available	56.86%
Matrix_80	BIM1	Not Available	56.71%
Matrix_261	ATERF-1	Not Available	56.50%
Matrix_480	BES1	Not Available	56.46%
Matrix_398	TBP2; ATTRB2	Not Available	56.23%
Matrix_256	IXR11; KNAT5; KNAT4; KNAT3	Not Available	56.06%
Motif_418	ABRE2HVA22	ABRE2 of barley HVA22 gene; G-box; component of ABA response complex in HVA22 gene; see ABRE3 of HVA22 gene; see CE1 (coupling element 1 = TGCCACCGG)	56.04%
Matrix_275	ZAP1	Characterization of a zinc-dependent transcriptional activator from Arabidopsis	56.00%
Matrix_344	ATERF15; AT4G18450	Not Available	55.95%
Matrix_451	STY1	Not Available	55.90%
Matrix_202	WRKY71; WRKY28; WRKY8	Not Available	55.72%
Matrix_325	WRKY4; WRKY3; WRKY58; ATWRKY34; WRKY20; ATWRKY2	Not Available	55.64%
Matrix_424	MYB59	Not Available	55.52%
Matrix_418	KNAT6; KNAT2	Not Available	55.29%
Motif_353	HEXAMERATH4	hexamer motif of Arabidopsis thaliana histone H4 promoter;Identification of cis-elements regulating the expression of an Arabidopsis histone H4 gene	55.24%
Matrix_494	OBP4	Not Available	55.20%
Motif_64	ABAREG2	Motif related to ABA regulation; Gene: sunflower helianthinin; transacting factor: bZIP	55.14%
Matrix_449	BIM2	Not Available	55.13%
Matrix_323	BIM3	Not Available	55.11%
Matrix_200	PIL5; AT4G28790; AT4G28800; AT4G28811; AT4G28815	Not Available	55.03%
Matrix_289	WRKY25	Not Available	54.80%
Motif_250	ACGTOSGLUB1	ACGT motif found in GluB-1 gene in rice; Required for endosperm-specific expression; Conserved in the 5'-flanking region of glutelin genes; Combination of GCN4, AACA and ACGT motifs was found sufficient to confer a detectable level of endosperm expression	54.63%
Matrix_158	AT1G03040; LRL1; UNE12; LRL2; LRL3	Not Available	54.63%
Matrix_426	CRF1; CRF2	Not Available	54.60%
Matrix_315	MYB111	Not Available	54.57%
Matrix_37	GATA27	Not Available	54.39%
Matrix_227	AT1G64620	Not Available	54.38%
Matrix_502	AT3G13040	Not Available	54.26%
Motif_641	LRENPCABE	LRE; A positive light regulatory element in tobacco CAB (cab-E) gene; Located at -241	54.13%
Motif_690	AtWER	Regulation of CAPRICE transcription by MYB proteins for root epidermis differentiation in Arabidopsis	54.09%
Matrix_404	OBP4	Not Available	54.06%
Matrix_150	UNE10; PIF7	Not Available	54.00%
Matrix_86	CRF5; CRF6; CRF4	Not Available	53.94%
Matrix_165	KNAT1	Not Available	53.89%
Matrix_371	MYB7; AtMYB6; AtMYB32; ATMYB4	Not Available	53.85%
Matrix_377	AT1G75490; DREB2C; AT2G40350; AT5G18450	Not Available	53.81%
Motif_17	AUXRETGA1GMGH3	TGA-box #1 in putative auxin-resonsive element (AUXRE) of soybean GH3 promoter; Strong binding site for proteins in plant nuclear extracts	53.81%
Matrix_427	ZAT14	Not Available	53.59%
Matrix_79	FUS3	Not Available	53.45%
Matrix_254	MYB52	Not Available	53.38%
Matrix_368	ATWRKY56; WRKY45; WRKY75; WRKY24	Not Available	53.27%
Matrix_152	EIL1; AT5G65100	Not Available	53.12%
Matrix_45	DRN	Not Available	53.06%
Matrix_235	WRKY67; WRKY64; WRKY63; WRKY66	Not Available	53.05%
Matrix_332	SPT; ALC	Not Available	52.99%
Matrix_321	HRD	Not Available	52.95%
Motif_197	HY5	Arabidopsis bZIP protein HY5 directly interacts with light-responsive promoters in mediating light control of gene expression	52.91%
Motif_322	GATA-1	Arabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristics	52.86%
Matrix_337	MYB46	Not Available	52.82%
Motif_399	UPRMOTIFIAT	Motif I in the conserved UPR (unfolded protein response) cis-acting element in Arabidopsis genes coding for SAR1B, HSP-90, SBR-like, Ca-ATPase 4, CNX1, PDI, etc.	52.78%
Matrix_109	GBF3	Not Available	52.77%
Matrix_328	AT1G76580	Not Available	52.72%
Motif_189	CMSRE1IBSPOA	CMSRE-1 (Carbohydrate Metabolite Signal Responsive Element 1) found in the promoter of sweet potato sporamin A gene	52.64%
Matrix_334	AT3G23230	Not Available	52.63%
Matrix_12	EIN3; EIL2	Not Available	52.55%
Matrix_374	AT5G07580; AT5G61590	Not Available	52.46%
Matrix_147	ERF3; AT1G80580	Not Available	52.41%
Matrix_211	MYB3	Not Available	52.34%
Matrix_365	AT1G10120; AT1G25330; CIB5; AT1G68920; AT3G23690; CIB1	Not Available	52.32%
Matrix_70	GATA26	Not Available	52.31%
Matrix_476	bHLH115; bHLH34	Not Available	52.28%
Motif_531	AP2SV40	AP-2 binding site in enhancer regions of SV40 and human metallothionein IIA (hMT IIA)	52.17%
Motif_477	MYB1; MYB2	An Arabidopsis myb homolog is induced by dehydration stress and its gene product binds to the conserved MYB recognition sequence;Evidence for a role for AtMYB2 in the induction of the Arabidopsis alcohol dehydrogenase gene (ADH1) by low oxygen	52.13%
Matrix_330	MYC2; TT8	Not Available	52.13%
Motif_167	SBP-box promoter motif	Molecular characterisation of the Arabidopsis SBP-box genes	52.08%
Matrix_308	INO	Not Available	52.04%
Matrix_507	TCP3	Not Available	51.98%
Matrix_120	BEE2	Not Available	51.97%
Matrix_296	GBF2	Not Available	51.90%
Matrix_110	ATABI4; AT3G57600	Not Available	51.88%
Matrix_106	AT5G47390	Not Available	51.88%
Motif_558	BOXIIPCCHS	Core of Box II/G box found in the parsley chs genes; Essential for light regulation	51.87%
Matrix_230	ARR11	Not Available	51.79%
Matrix_169	E2F1	Not Available	51.79%
Motif_485	NRRBNEXTA	NRR (negative regulatory region) in promoter region of Brassica napus extA extensin gene; Removal of this region leads to expression in all tissues within the stem internode, petiole and root	51.76%
Matrix_339	bHLH104	Not Available	51.64%
Matrix_465	MYC4	Not Available	51.57%
Matrix_247	PIF3	Not Available	51.43%
Matrix_331	GBF1	Not Available	51.43%
Matrix_253	ETT	Not Available	51.43%
Matrix_520	ARR14	Not Available	51.43%
Matrix_101	ERF5	Not Available	51.40%
Motif_51	MYB46	Identification of a cis-acting regulatory motif recognized by MYB46, a master transcriptional regulator of secondary wall biosynthesis	51.40%
Motif_356	S2FSORPL21	S2F binding site (S2 site) in spinach RPL21 gene encoding the plastid ribosomal protein L21; S2 site (CATACAWW) is conserved in promoter region of many nuclear genes encoding plastid proteins; Leaf-specific, light-independent regulatory element; S2 site is related to but different from the light-responsive GT-1 binding site	51.39%
Matrix_287	ERF2	Not Available	51.36%
Motif_19	AAGACGTAGATACL12	Sequence found in Arabidopsis acyl carrier protein (ACP), Acl1.2, gene promoter; Contains bZIP core motif (ACGT)	51.25%
Matrix_231	HDG2; HDG3; ATML1; HB-7	Not Available	51.21%
Matrix_362	DEAR3	Not Available	51.18%
Matrix_273	ANAC55	Not Available	51.14%
Motif_525	CRTDREHVCBF2	Preferred sequence for AP2 transcriptional activator HvCBF2 of barley; Core CRT/DRE motif; HvCBF2 bound to a (G/a)(T/c)CGAC core motif; DNA binding is regulated by temperature	51.13%
Matrix_6	AT1G70000	Not Available	51.06%
Matrix_271	AT3G16350	Not Available	51.06%
Motif_286	SEBFCONSSTPR10A	Binding site of the potato silencing element binding factor (SEBF) gene found in promoter of pathogenesis-related gene (PR-10a); Located between -45 and -39; Similar to the auxin response element	51.01%
Matrix_60	AT1G01260; AT5G57150	Not Available	50.86%
Matrix_41	anac058	Not Available	50.83%
Matrix_300	bZIP68; bZIP16	Not Available	50.81%
Matrix_312	ARF11; MP; ARF6; IAA21; ARF8; ARF4	Not Available	50.81%
Matrix_122	ABF1; AREB2	Not Available	50.79%
Motif_329	AMMORESIIUDCRNIA1	Motifs (IIU and IID) found in the Chlamydomonas Nia1 gene promoter; Involved in ammonium-response; Located between -231 and -219 and also between -76 and -65; Involved in Nia1 transcription activation	50.79%
Matrix_389	ILR3	Not Available	50.55%
Motif_499	AtMYC2	A basic helix-loop-helix transcription factor in Arabidopsis, MYC2, acts as a repressor of blue light-mediated photomorphogenic growth	50.44%
Matrix_135	ABI3	Not Available	50.41%
Motif_507	ABASEED1	ABA regulation; seed expression; Gene: carrot Dc3; Transacting factor: bZIP; Contains ACGT motif	50.40%
Matrix_243	RAP2.12; RAP2.2	Not Available	50.38%
Motif_392	PALBOXAPC	Box A; Consensus; One of three putative cis-acting elements (boxes P, A, and L) of phenylalanine ammonia-lyase (PAL; EC 4.3.1.5) genes in parsley (P.c.); None of these elements (boxes P, A, and L) alone, or the promoter region containing all of them together, conferred elicitor or light responsiveness. These elements appear to be necessary but not sufficient for elicitor- or light-mediated PAL gene activation; See also Box P, Box L	50.34%
Matrix_206	CUC1; ANAC100	Not Available	50.33%
Matrix_505	GATA8	Not Available	50.27%
Motif_685	PALINDROMICCBOXGM	Palindromic C-box in soybean;bZIP factors, STGA1 and STFs (STF1 and STF2) found in soybean apical hypocotyl, bind to this sequence	50.15%
Motif_291	ABFs binding site motif	Binding site of trans-acting factor EMBP-1; wheat Em gene;Binding site of ABFs; ABFs (ABRE binding factors) were isolated from Arabidopsis by a yeast one-hybrid screening system; Expression ABFs is induced by ABA and various stress treatment; ABFs belongs to a distinct subfamily of bZIP proteins; Involved in ABA-mediated stress-signaling pathway;A plant leucine zipper protein that recognizes an abscisic acid response element	50.10%
Matrix_343	AT2G33710	Not Available	50.05%