PLAZA 3.0 Dicots : Binding Sites

Binding sites with simlar sequences

Binding site: Matrix_305
Name: PIF4
Description: Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responses

Positional Weight Matrix

Minimum similarity percentage

Binding site	Name	Description	Similarity
Matrix_214	AP1	Not Available	79.87%
Matrix_443	AGL15	Not Available	75.33%
Matrix_403	BZR1	Not Available	74.64%
Matrix_77	PRR5	Not Available	74.63%
Matrix_55	PIF3	Not Available	72.07%
Matrix_359	FLC	Not Available	71.35%
Matrix_369	AT2G18300	Not Available	70.12%
Matrix_108	PIF4	Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responses	68.11%
Matrix_191	PIF5	Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling	66.98%
Matrix_251	PIF5	Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling	66.49%
Matrix_104	PI	Not Available	65.64%
Matrix_477	RAV1	Not Available	65.57%
Matrix_467	RAV1	Not Available	65.57%
Matrix_34	RAV1_2	RAV1, a novel DNA-binding protein, binds to bipartite recognition sequence through two distinct DNA-binding domains uniquely found in higher plants	65.57%
Matrix_153	AP2	Not Available	65.48%
Matrix_438	AtbZIP63	Not Available	65.33%
Matrix_264	ATAREB1	Not Available	64.22%
Matrix_257	NAC050; ANAC051; anac057; NAC2	Not Available	64.17%
Matrix_186	FHY3	Not Available	64.03%
Matrix_194	HYH; HY5	Not Available	63.72%
Matrix_338	AP2	Not Available	63.65%
Matrix_389	ILR3	Not Available	62.32%
Matrix_330	MYC2; TT8	Not Available	61.90%
Matrix_465	MYC4	Not Available	61.69%
Matrix_122	ABF1; AREB2	Not Available	61.65%
Matrix_120	BEE2	Not Available	61.41%
Matrix_514	DYT1	Regulation of the Arabidopsis anther transcriptome by DYT1 for pollen development	61.36%
Matrix_466	PRR5	Not Available	61.27%
Matrix_200	PIL5; AT4G28790; AT4G28800; AT4G28811; AT4G28815	Not Available	61.26%
Matrix_158	AT1G03040; LRL1; UNE12; LRL2; LRL3	Not Available	61.22%
Matrix_323	BIM3	Not Available	60.70%
Matrix_449	BIM2	Not Available	60.36%
Matrix_183	BES1	A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana	60.35%
Matrix_80	BIM1	Not Available	59.70%
Matrix_489	RAV1	Not Available	59.39%
Matrix_498	AT2G28710; AT3G46070; AT3G46080; ZAT7	Not Available	59.10%
Matrix_440	LFY	Not Available	58.79%
Matrix_480	BES1	Not Available	58.69%
Matrix_171	LBD3; LBD4	Not Available	58.48%
Matrix_298	RAV1	Not Available	58.38%
Matrix_413	RAV1	Not Available	58.38%
Matrix_53	MYC3	Not Available	58.34%
Matrix_19	PIF5	Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling	58.17%
Matrix_129	ABF1	Not Available	58.06%
Matrix_56	BZIP17; BZIP28; BZIP49	Not Available	58.03%
Matrix_109	GBF3	Not Available	57.90%
Matrix_446	LBD16	Not Available	57.88%
Matrix_36	RAV1_1	RAV1, a novel DNA-binding protein, binds to bipartite recognition sequence through two distinct DNA-binding domains uniquely found in higher plants	57.77%
Matrix_331	GBF1	Not Available	57.56%
Matrix_217	BES1	A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana	57.55%
Matrix_247	PIF3	Not Available	57.29%
Matrix_151	ASIL1	Not Available	57.24%
Matrix_345	POC1	Not Available	56.58%
Matrix_118	PIF3_2	Direct targeting of light signals to a promoter element-bound transcription factor	56.58%
Matrix_113	ABI5	Not Available	56.32%
Matrix_420	ANAC58	Not Available	56.26%
Matrix_192	FHY3/FAR1	Not Available	56.17%
Matrix_156	POC1	Not Available	55.99%
Matrix_268	EMB2749; VND5; SMB; VND1; ANAC076; NAC101; ANAC105	Not Available	55.69%
Matrix_59	AT4G00238; AT4G00250	Not Available	55.68%
Matrix_23	ANAC46	Not Available	55.67%
Matrix_418	KNAT6; KNAT2	Not Available	55.57%
Motif_571	GBOXSORBCS1	G-box found in the spinach RBCS-1 gene promoter; Located between -219 and -212; G-box trimer confers relatively high level expression in roots	55.35%
Motif_599	LREBOXIIPCCHS1; HY5	BoxII; Light responsive element (LRE) found in the parsley CHS-1 (chalcone synthase-1) gene promoter; Required for light responsiveness; nuclear protein binding site; Highly conserved in various light inducible gene promoters; Arabidopsis bZIP protein HY5 directly interacts with light-responsive promoters in mediating light control of gene expression	55.26%
Matrix_58	WRKY55; ATWRKY54; WRKY46; WRKY70; AtWRKY41; WRKY53; WRKY30	Not Available	55.07%
Matrix_406	ATERF-7	Not Available	54.87%
Matrix_326	AT5G07310; Rap2.6L; AT5G61890	Not Available	54.82%
Matrix_481	BES1	A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana	54.81%
Matrix_188	SPL4	Not Available	54.80%
Matrix_332	SPT; ALC	Not Available	54.79%
Matrix_231	HDG2; HDG3; ATML1; HB-7	Not Available	54.77%
Matrix_256	IXR11; KNAT5; KNAT4; KNAT3	Not Available	54.71%
Matrix_70	GATA26	Not Available	54.69%
Matrix_439	AP3	Not Available	54.68%
Matrix_193	RAV1	Not Available	54.65%
Matrix_265	NGA3	Not Available	54.65%
Matrix_273	ANAC55	Not Available	54.62%
Matrix_352	LEC2	Not Available	54.44%
Matrix_206	CUC1; ANAC100	Not Available	54.30%
Matrix_41	anac058	Not Available	54.25%
Matrix_141	AT3G25990	Not Available	54.20%
Matrix_123	FUSCA3	Not Available	54.13%
Matrix_307	RGL2; RGL3	Not Available	54.03%
Matrix_462	ATERF-8	Not Available	54.03%
Matrix_14	ZCW32; AT5G62610	Not Available	53.94%
Matrix_499	ARR18	Not Available	53.94%
Matrix_187	CDC5	Not Available	53.93%
Matrix_349	CDC5	Not Available	53.93%
Matrix_116	ANAC55	Not Available	53.86%
Matrix_259	AT1G50680; AT1G51120	Not Available	53.84%
Matrix_328	AT1G76580	Not Available	53.78%
Matrix_463	HAT3.1	Not Available	53.77%
Motif_691	HBOXCONSENSUSPVCHS	H-box; Consensus sequence of H-boxes found in bean chs15 gene promoter; Essential for both light regulation and elicitor induction; Similar sequence was found in tobacco Tnt1 retrotransposon promoter (LTR); Tnt1 is induced by wounding and by abiotic stress; KAP-2 binds to the H-box and stimulates transcription from a promoter harboring the H-box; KAP-2 shares sequence similarity to the large subunit of mammalian Ku autoantigen	53.70%
Matrix_497	AP3	Not Available	53.68%
Matrix_300	bZIP68; bZIP16	Not Available	53.63%
Matrix_22	BES1	A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana	53.62%
Matrix_399	TGA1	Not Available	53.37%
Matrix_322	NST3; ANAC015; BRN2	Not Available	53.31%
Matrix_311	TGA1	Not Available	53.31%
Matrix_355	ERF10; ERF11	Not Available	53.21%
Matrix_219	AGL15	Not Available	53.15%
Matrix_128	TGA2	Not Available	53.04%
Matrix_226	GATA1	Not Available	53.03%
Matrix_333	GATA3	Not Available	52.98%
Motif_480	ABRE2HVA1	ABA responsive element, ABRE2, found in barley HVA1 gene encoding a class 3 late embryogenesis-abundant protein; stress response	52.95%
Motif_498	SGBFGMGMAUX28	bZIP proteins SGBF-1 and SGBF-2 binding site in soybean GmAux28 gene promoter	52.94%
Matrix_213	ATHB22	Not Available	52.90%
Matrix_184	AGL15	Not Available	52.90%
Matrix_456	bZIP60	Not Available	52.89%
Matrix_296	GBF2	Not Available	52.83%
Matrix_286	GATA7	Not Available	52.76%
Matrix_221	SPL7	Not Available	52.70%
Matrix_154	AT1G22190; AT1G36060; AT1G64380; RAP2.4; AT2G20880; AT2G22200; AT4G13620; AT4G28140; AT4G39780; AT5G65130	Not Available	52.67%
Matrix_33	SPL11; SPL10; SPL2	Not Available	52.64%
Matrix_47	AtMYB77	Not Available	52.63%
Matrix_68	AtMYB77	More than 80 R2R3-MYB regulatory genes in the genome of Arabidopsis thaliana. Plant J 14: 273-84	52.63%
Matrix_271	AT3G16350	Not Available	52.51%
Matrix_50	ATERF14; AT5G43410	Not Available	52.50%
Matrix_317	AT1G06070; AT2G31370; AT2G40620	Not Available	52.43%
Matrix_176	MYB98	Not Available	52.42%
Matrix_101	ERF5	Not Available	52.42%
Matrix_278	AtbZIP44	Not Available	52.39%
Motif_154	ABREBNNAPA	ABRE of napA storage-protein gene of Brassica napus; ABA responsive element; dist B ABRE mediated transactivation by ABI3 adn ABI3-dependent response to ABA; a tetramer of the composite RY/G complex mediated only ABA-independent transactivation by ABI3; B2 domain of ABI3 is necessary for ABA-independent and ABA-dependent activation through the dist B ABRE; B3 domain of ABI3 interacts with the RY/G complex	52.34%
Matrix_404	OBP4	Not Available	52.27%
Motif_232	ABADESI1	Responsive to ABA and desiccation; Motif I of rice rab16A-D (initially called rab-21); Expressed in seeds late during embryogenesis; Induced by ABA and osmotic stress in vegetative tissues; Contains ACGT motif; transacting factor: TAF-1	52.13%
Matrix_18	AP3	Not Available	51.96%
Matrix_227	AT1G64620	Not Available	51.91%
Matrix_287	ERF2	Not Available	51.85%
Matrix_377	AT1G75490; DREB2C; AT2G40350; AT5G18450	Not Available	51.78%
Matrix_48	PI	Not Available	51.72%
Motif_314	HY5AT	G box; Binding site of Arabidopsis bZIP protein HY5; HY5 is constitutively nuclear localized and is involved in light regulation of transcriptional activity of the promoters containing the G-box;HY5 abundance peaks in early seedling development, consistent with its role in promoting photomorphogenesis; HY5 stability and activity is regulated by phosphorylation in its COP1 binding domain; HY5 regulates stimulus-induced development of root and hypocotyl	51.71%
Matrix_83	PRR5	Not Available	51.70%
Motif_534	GBOXRELOSAMY3	G box-related element found in Amy3D (amylase) promoter of rice; Similar to ABRE	51.69%
Matrix_172	BES1	A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana	51.48%
Matrix_39	AP1	Not Available	51.47%
Matrix_20	ANAC030; NST1; NAC066	Not Available	51.46%
Matrix_57	WIN1; SHN3; SHN2	Not Available	51.45%
Matrix_469	NAC041; NAC083	Not Available	51.41%
Matrix_454	AT1G77200; ATERF38; AT4G16750; AT5G52020	Not Available	51.40%
Motif_36	OCETYPEIINTHISTONE	Type II element; Oct-containing composite element Type II found in tobacco histone gene promoter; Oct (octomer) motif is paired with TCA motif to form Type II element; Required for S-phase specific and meristematic tissue-specific expression	51.38%
Matrix_432	AT1G77920	Not Available	51.37%
Matrix_409	DEAR3	Not Available	51.36%
Matrix_209	RAP2.6	Not Available	51.36%
Motif_92	ABREATRD22	ABRE (ABA responsive element) in Arabidopsis dehydration-responsive gene rd22	51.28%
Motif_252	GBOXPC	G box; Binding site of parsley cytosolic G-box binding factors (cytosolic GBFs); Cytosolic G-Box binding activity is modulated by light; DNA binding activity of cytosolic GBFs is regulated by cytosolic phosphorylation/dephospholylation activities; Cytosolic GBFs are translocated to the nucleus in a light-regulated manner	51.21%
Motif_159	LFY	Structural basis for LEAFY floral switch function and similarity with helix-turn-helix proteins	51.20%
Motif_686	LFY	Structural basis for LEAFY floral switch function and similarity with helix-turn-helix proteins	51.20%
Matrix_143	GATA14; GATA6; GATA5	Not Available	51.18%
Matrix_37	GATA27	Not Available	51.13%
Matrix_17	WRKY22	Not Available	51.10%
Matrix_29	AP1	Not Available	51.07%
Matrix_515	ddf2; ATCBF3; CBF1; CBF4	Not Available	51.02%
Matrix_174	ZAT2	Not Available	51.01%
Matrix_115	AGL15	Not Available	50.99%
Motif_388	CPRFPCCHS; AtbZIP1	BoxII; Binding site of CPRF-1, -2, -3 and -4(Common Plant Regulatory Factor) in the parsley light responsive chalcone synthase (CHS) gene promoter; CPRF proteins are bZIP class transcription factors; CPRF proteins participates in the light-mediated activation of the CHS gene in parsley; ACE; The proline-rich domains of CPRF1 and 4 activate transcription; CPRF1-containing bZIP heterodimer interacts with ACE in vivo; ACE; Binding site of parsley bZIP factors CPRF1 and 4; Found in the parsley light responsive chalcone synthase (CHS) gene promoter; The proline-rich domains of CPRF1 and 4 activate transcription; CPRF1-containing bZIP heterodimer interacts with ACE in vivo; The arabidopsis bZIP1 transcription factor is involved in sugar signaling, protein networking, and DNA binding	50.93%
Matrix_416	ASL5	Not Available	50.90%
Matrix_373	E2FE	Not Available	50.90%
Motif_289	LFY	Structural basis for LEAFY floral switch function and similarity with helix-turn-helix proteins	50.88%
Motif_527	LFY	Structural basis for LEAFY floral switch function and similarity with helix-turn-helix proteins	50.88%
Matrix_166	TGA4	Not Available	50.87%
Matrix_124	AtHB23; ATHB13; ATHB20; ATHB5	Not Available	50.82%
Matrix_282	bZIP60	Not Available	50.82%
Matrix_464	AGL15; AGL71	Not Available	50.77%
Motif_300	ACGTROOT1; HY5	Arabidopsis bZIP protein HY5 directly interacts with light-responsive promoters in mediating light control of gene expression. ACGT motif related to root expression; Gene: synthetic; perfect palindromic sequence (PA) containing G-box-related sequence; transacting factor: TAF-1; Binding of SGBF-1 (a Soybean G-box binding bZIP transcription factor) to ABRE is enhanced by SCOF-1 (a zinc finger protein ); Transcription of SCOF-1 is induced by low temperature and ABA	50.72%
Matrix_395	AT1G19210; ORA47; AT4G31060; AT5G21960	Not Available	50.72%
Motif_400	ABREAZMRAB28	ABA-responsive element (ABRE A) found at -148 to -139 in maize rab28; Maize rab28 is ABA-inducible in embryos and vegetative tissues	50.64%
Motif_281	ABRE3OSRAB16	ABA-responsive element of rice rab16 and alpha-amylase genes	50.64%
Matrix_472	ZN_C2_H2	Not Available	50.62%
Motif_56	O2F3BE2S1	opaque-2 recognition site F3 in Bertholletia excelsa (Brazil nut tree) 2S storage protein gene (be2S1); O2 protein binds to F1, F2 and F3 sequences of be2S1 promoter; F3 is hybrid of A/G box	50.62%
Motif_237	O2F1BE2S1	opaque-2 recognition site F1 in Bertholletia excelsa (Brazil nut tree) 2S storage protein gene (be2S1); O2 protein binds to F1, F2 and F3 sequences of be2S1 promoter; F1 is hybrid C/G box	50.58%
Matrix_335	HSFB2A	Not Available	50.49%
Matrix_229	CDC5	A cdc5+ homolog of a higher plant, Arabidopsis thaliana	50.45%
Motif_406	ABREBZMRAB28	ABA-responsive element (ABRE B) found at -105 to -96 in maize rab28; Maize rab28 is ABA-inducible in embryos and vegetative tissues	50.44%
Matrix_458	MGP; AT1G14580; AtIDD7; AtIDD5; AtIDD4; AtIDD12; JKD; AT5G66730	Not Available	50.32%
Matrix_448	ATERF6	Not Available	50.27%
Matrix_169	E2F1	Not Available	50.24%
Matrix_75	WRKY29	Not Available	50.23%
Matrix_433	ATERF1	Not Available	50.17%
Motif_202	OPAQUE2ZM22Z	Opaque-2 (O2) target sequence in maize 22- and 27-kD zein promoters; ACGT motif; Related to seed expression; O2 target sequence; Gene: maize 22-kD zein; transacting factor: 02	50.08%