Motif_187 | AT1BOX | AT-1 box (AT-rich element) found in the promoter region of the genes for tobacco chlorophyll a/b binding protein (cab) and small subunit of ribulose-1,5-bisphosphate carboxylase (rbcS); Deletion of a region containing the AT-1 site in the tomato RBCS3A gene strongly inhibited reporter gene expression, whereas AT-1 site in N. plumbaginifolia CAB gene (cab-E) is in a negative element | | 80.10% |
Matrix_523 | FUSCA3 | Not Available | | 75.30% |
Matrix_51 | LFY | Not Available | | 74.71% |
Matrix_205 | AGL15 | Not Available | | 74.70% |
Motif_547 | AG BS in AP3 | The CArG boxes in the promoter of the Arabidopsis floral organ identity gene APETALA3 mediate diverse regulatory effects | | 67.71% |
Matrix_83 | PRR5 | Not Available | | 65.86% |
Motif_642 | SEF1MOTIF | SEF1 (soybean embryo factor 1) binding motif; sequence found in 5'-upstream region (-640; -765) of soybean beta-conglicinin (7S globulin) gene | | 64.87% |
Motif_581 | AP1 BS in AP3 | The CArG boxes in the promoter of the Arabidopsis floral organ identity gene APETALA3 mediate diverse regulatory effects | | 63.64% |
Matrix_48 | PI | Not Available | | 62.34% |
Matrix_413 | RAV1 | Not Available | | 62.18% |
Matrix_298 | RAV1 | Not Available | | 62.18% |
Matrix_495 | HD-GL2-1; ANL2 | Not Available | | 61.58% |
Matrix_435 | ATHB51 | Not Available | | 61.40% |
Matrix_204 | WOX13 | Not Available | | 60.80% |
Matrix_269 | FHY3/FAR1 | Not Available | | 60.79% |
Motif_521 | RBCSBOX3PS | rbcS box III; 5' upstream region (-114) of pea rbcS gene; binding with trans factor GT-1; one of GT-1 boxes | | 60.62% |
Matrix_439 | AP3 | Not Available | | 60.13% |
Motif_656 | AG BS in SUP | Dimerization specificity of Arabidopsis MADS domain homeotic proteins APETALA1, APETALA3, PISTILLATA, and AGAMOUS | | 59.68% |
Matrix_115 | AGL15 | Not Available | | 59.61% |
Matrix_172 | BES1 | A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana | | 59.53% |
Motif_615 | MARTBOX | T-Box; Motif found in SAR (scaffold attachment region; or matrix attachment region, MAR) | | 59.44% |
Matrix_240 | AT4G29000 | Not Available | | 58.85% |
Motif_631 | MARARS | ARS element; Motif found in SAR (MAR) | | 58.68% |
Matrix_13 | HAT5 | Not Available | | 58.65% |
Matrix_219 | AGL15 | Not Available | | 58.58% |
Matrix_88 | AHL12 | Not Available | | 58.20% |
Motif_294 | HSRENTHSR203J | HSRE(HSR203 responsive element) in tobacco responsible for the marked induction of the HSR203J gene during the HR (hypersensitive response); HSR203J is specifically activated during the early steps of incompatible plant/pathogen interactions | | 57.87% |
Matrix_444 | AT1G19485; AT4G17950 | Not Available | | 57.79% |
Matrix_93 | YAB5 | Not Available | | 57.75% |
Matrix_302 | HAT1; HAT2 | Not Available | | 57.57% |
Matrix_354 | AHL12 | Not Available | | 57.40% |
Matrix_81 | YAB1 | Not Available | | 56.92% |
Matrix_143 | GATA14; GATA6; GATA5 | Not Available | | 56.65% |
Matrix_203 | GATA9; GATA12 | Not Available | | 56.48% |
Matrix_382 | AT3G04850 | Not Available | | 56.24% |
Matrix_430 | TOE2 | Not Available | | 56.16% |
Matrix_213 | ATHB22 | Not Available | | 56.00% |
Matrix_257 | NAC050; ANAC051; anac057; NAC2 | Not Available | | 55.79% |
Matrix_440 | LFY | Not Available | | 55.78% |
Matrix_351 | HAT9; ATHB-4; ATHB2; HAT22; HAT14 | Not Available | | 55.72% |
Matrix_461 | ATHB12 | Not Available | | 55.69% |
Matrix_168 | AHL25 | Not Available | | 55.52% |
Matrix_479 | TOE1 | Not Available | | 55.22% |
Matrix_333 | GATA3 | Not Available | | 55.11% |
Motif_147 | HDMOTIFPCPR2 | HD (homeodomain) protein target site in parsley pathogenesis-related protein 2 (PR2); A potential in vivo target site | | 55.09% |
Matrix_70 | GATA26 | Not Available | | 55.06% |
Matrix_391 | AHL20 | Not Available | | 55.05% |
Matrix_264 | ATAREB1 | Not Available | | 55.00% |
Motif_654 | DR5GMGH3 | DR5; A highly active synthetic auxin response element; Created by site-directed mutations in a natural composite AuxRE found in the soybean GH3 promoter; The DR5 showed greater auxin responsiveness; Binding site of ARF1 | | 54.94% |
Matrix_273 | ANAC55 | Not Available | | 54.93% |
Motif_608 | OBP-1-4-5 BS in GST6 | OBP1, 4, and 5 (OBF binding protein) binding site found in the Arabidopsis GST6 gene promoter; Located between -398 and -388; OBP1 is able to stimulate the binding of OBF proteins to the GST6 promoter;Overexpression of OBP3 lead to severe growth defect with altered root development and yellowish leaves; All OBP proteins contain transcriptional activation domains in their C-term. region; Dof protein play important roles in plant growth and development;The promoter of a H202-inducible, Arabidopsis glutathione S-transferase gene contains closely linked OBF- and OBP1-binding RT | | 54.82% |
Matrix_489 | RAV1 | Not Available | | 54.76% |
Motif_126 | 5256BOXLELAT5256 | 52/56 box; A sequence motif shared between the tomato LAT(Late Anther Tomato)52 and LAT56 promoters; Encompassing PB core motif (TGTGGTT), and is closely related to the box II sequence motif in the pea rbcS-3A gene promoter; Involved in modulating the activity of the LAT gene promoters in pollen; Dispensable for the developmental regulation of the LAT52 gene in pollen; 52/56 box may be a target for the binding of a member of the GT-1 transcription factor family | | 54.56% |
Matrix_89 | SOC1 | Genome-wide identification of SOC1 and SVP targets during the floral transition in Arabidopsis | | 54.52% |
Matrix_71 | ATHB7 | Not Available | | 54.52% |
Motif_216 | PYRIMIDINEBOXHVEPB1 | Pyrimidine box found in the barley EPB-1 (cysteine proteinase) gene promoter; Located between -120 to -113; Required for GA induction | | 54.50% |
Matrix_521 | AHL20 | Not Available | | 54.46% |
Matrix_125 | AHL12 | Not Available | | 54.36% |
Motif_624 | ATHB6 binding site motif | Consensus binding sequence for Arabidopsis homeodomain-leucine zipper protein, ATHB6; ATHB6 is a target of the protein phosphatase ABI1 and regulates hormone responses; Homeodomain protein ATHB6 is a target of the protein phosphatase ABI1 and regulates hormone responses in Arabidopsis | | 54.08% |
Matrix_499 | ARR18 | Not Available | | 53.69% |
Matrix_469 | NAC041; NAC083 | Not Available | | 53.64% |
Matrix_212 | ATHB-12 | Not Available | | 53.63% |
Matrix_54 | AHL20 | Not Available | | 53.52% |
Matrix_103 | ATHB1 | The Athb-1 and -2 HD-Zip domains homodimerize forming complexes of different DNA binding specificities | | 53.48% |
Matrix_434 | ARR11 | Not Available | | 53.43% |
Motif_55 | MRNASTA1CRPSBD | mRNA stability determinant found in 5'-UTR of psbD mRNA of Chlamydomonas reinhardtii; Required for the stable accumulation; Located within the first 12 nucleotides of the leader region | | 53.41% |
Matrix_431 | ATHB21; HB-3 | Not Available | | 53.31% |
Matrix_483 | ICU4 | Not Available | | 53.25% |
Motif_136 | SEF4MOTIFGM7S | SEF4 binding site; Soybean consensus sequence found in 5'upstream region (-199) of beta-conglycinin (7S globulin) gene (Gmg17.1); Binding with SEF4 (soybean embryo factor 4) | | 52.89% |
Matrix_231 | HDG2; HDG3; ATML1; HB-7 | Not Available | | 52.88% |
Matrix_185 | AHL25 | Not Available | | 52.86% |
Matrix_182 | ATHB6 | Not Available | | 52.70% |
Matrix_236 | CCA1 | Not Available | | 52.55% |
Matrix_225 | MYB52 | Not Available | | 52.51% |
Matrix_32 | AHL25 | Not Available | | 52.40% |
Matrix_37 | GATA27 | Not Available | | 52.39% |
Matrix_284 | KAN2; KAN3; KAN; KAN4 | Not Available | | 52.37% |
Motif_276 | LREBOX3PSRBCS3 | LRE (light-responsive element) Box III of pea rbcS-3A gene; GT-1 binding | | 52.21% |
Matrix_447 | RVE1 | Not Available | | 51.95% |
Matrix_39 | AP1 | Not Available | | 51.72% |
Matrix_458 | MGP; AT1G14580; AtIDD7; AtIDD5; AtIDD4; AtIDD12; JKD; AT5G66730 | Not Available | | 51.72% |
Matrix_259 | AT1G50680; AT1G51120 | Not Available | | 51.64% |
Motif_667 | TATABOXOSPAL | Binding site for OsTBP2, found in the promoter of rice pal gene encoding phenylalanine ammonia-lyase; OsTFIIB stimulated the DNA binding and bending activities of OsTBP2 and synergistically enhanced OsTBP2-mediated transcription from the pal promoter | | 51.53% |
Matrix_453 | EIL3 | Not Available | | 51.47% |
Matrix_286 | GATA7 | Not Available | | 51.46% |
Matrix_265 | NGA3 | Not Available | | 51.42% |
Matrix_193 | RAV1 | Not Available | | 51.42% |
Motif_601 | D3GMAUX28 | D3; DNase I protected sequence found in the soybean auxin responsive gene, Aux28, promoter; Located between -750 and -760; A/T-rich sequence | | 51.39% |
Matrix_9 | AT5G04760 | Not Available | | 51.37% |
Matrix_17 | WRKY22 | Not Available | | 51.34% |
Matrix_268 | EMB2749; VND5; SMB; VND1; ANAC076; NAC101; ANAC105 | Not Available | | 51.32% |
Matrix_6 | AT1G70000 | Not Available | | 51.25% |
Matrix_308 | INO | Not Available | | 51.18% |
Matrix_75 | WRKY29 | Not Available | | 51.04% |
Matrix_206 | CUC1; ANAC100 | Not Available | | 51.04% |
Motif_489 | SORLREP3AT | one of Sequences Over-Represented in Light-Repressed Promoters (SORLREPs) in Arabidopsis; Computationally identified phyA-repressed motifs; See also all SORLREPs and also all SORLIPs;Identification of key promoter motifs involved in the network of light-regulated gene expression by combined analysis of genomic sequence and microarray data | | 51.01% |
Matrix_311 | TGA1 | Not Available | | 50.96% |
Matrix_276 | AT1G01520; AT3G09600; AT4G01280; LCL1; AT5G52660 | Not Available | | 50.93% |
Matrix_8 | KAN1 | Not Available | | 50.91% |
Matrix_438 | AtbZIP63 | Not Available | | 50.88% |
Matrix_318 | ATHB16 | Not Available | | 50.76% |
Matrix_383 | CCA1 | Not Available | | 50.68% |
Matrix_211 | MYB3 | Not Available | | 50.64% |
Matrix_408 | GATA12 | Not Available | | 50.61% |
Matrix_67 | GLK1 | Not Available | | 50.60% |
Motif_364 | DE1PSPRA2 | DE1 found in the pea(P.S) pra2 gene promoter; Involved in pra2 down-regulation by phytochrome A, phytochrome B and blue-light photoreceptors; pra2 encodes a small GTPase belonging to the YPT/rab family; DF1 has DNA-binding domain specifically binds to two types of DNA sequences, DE1 and GT2 | | 50.58% |
Matrix_322 | NST3; ANAC015; BRN2 | Not Available | | 50.58% |
Motif_166 | RAP2.2 | Transcription factor RAP2.2 and its interacting partner SINAT2: stable elements in the carotenogenesis of Arabidopsis leaves | | 50.54% |
Matrix_221 | SPL7 | Not Available | | 50.52% |
Matrix_141 | AT3G25990 | Not Available | | 50.51% |
Motif_424 | GATA-1 | Arabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristics | | 50.46% |
Matrix_384 | ATWRKY17 | Not Available | | 50.42% |
Motif_18 | 5659BOXLELAT5659 | 56/59 box; A sequence motif shared between the tomato LAT(Late Anther Tomato)56 and LAT59 promoters; Found in -103 to -94 in LAT56 and in -114 to -105 in LAT59; Involved in modulating the activity of the LAT gene promoters in pollen | | 50.41% |
Matrix_34 | RAV1_2 | RAV1, a novel DNA-binding protein, binds to bipartite recognition sequence through two distinct DNA-binding domains uniquely found in higher plants | | 50.34% |
Matrix_467 | RAV1 | Not Available | | 50.34% |
Matrix_477 | RAV1 | Not Available | | 50.34% |
Matrix_263 | WRKY33; WRKY19; WRKY32 | Not Available | | 50.28% |
Matrix_271 | AT3G16350 | Not Available | | 50.09% |
Matrix_161 | MYBC1; AT3G10760; LUX; AT5G05090; AT5G59570 | Not Available | | 50.06% |
Matrix_10 | STY1 | Not Available | | 50.00% |
Matrix_505 | GATA8 | Not Available | | 50.00% |