Matrix_209 | RAP2.6 | Not Available | | 77.10% |
Matrix_457 | TGA2 | Not Available | | 68.11% |
Motif_255 | B2GMAUX28 | B2; DNase I protected sequence found in the soybean auxin responsive gene, Aux28, promoter; Located between -310 and -301; Contains a TGACGACA sequence which is similar to TGACGT/C sequence found in Ocs, CaMV35S and histone H3 promoter; Contains as-1 motif | | 66.89% |
Matrix_3 | WRKY48 | Not Available | | 66.36% |
Motif_577 | GRAZMRAB28 | GRA; GC-rich rab activator; Found in the promoter of ABA responsive rab28 gene from maize; Similar (seven of 12 bases) to the GRA element from the maize rab17 promoter (GRAZMRAB17); Found at -138 to -130 | | 66.18% |
Matrix_492 | ETT | Not Available | | 66.08% |
Matrix_489 | RAV1 | Not Available | | 65.56% |
Matrix_102 | WRKY21 | Not Available | | 65.27% |
Matrix_384 | ATWRKY17 | Not Available | | 64.58% |
Matrix_263 | WRKY33; WRKY19; WRKY32 | Not Available | | 64.54% |
Matrix_207 | WRKY10; WRKY57; AT2G44745; ATWRKY13; WRKY49 | Not Available | | 63.95% |
Matrix_75 | WRKY29 | Not Available | | 63.77% |
Motif_621 | bZIP23; bZIP19 | Arabidopsis thaliana transcription factors bZIP19 and bZIP23 regulate the adaptation to zinc deficiency | | 63.18% |
Motif_203 | bZIP23; bZIP19 | Arabidopsis thaliana transcription factors bZIP19 and bZIP23 regulate the adaptation to zinc deficiency | | 62.93% |
Matrix_197 | NAP | Not Available | | 62.91% |
Matrix_287 | ERF2 | Not Available | | 62.82% |
Matrix_202 | WRKY71; WRKY28; WRKY8 | Not Available | | 62.80% |
Motif_638 | ABRE binding site motif | Not Available | | 62.70% |
Matrix_415 | WRKY27 | Not Available | | 62.36% |
Matrix_370 | WRKY50; WRKY51 | Not Available | | 62.03% |
Matrix_101 | ERF5 | Not Available | | 61.92% |
Matrix_256 | IXR11; KNAT5; KNAT4; KNAT3 | Not Available | | 61.72% |
Matrix_220 | WRKY18 | Not Available | | 61.72% |
Matrix_433 | ATERF1 | Not Available | | 61.61% |
Matrix_343 | AT2G33710 | Not Available | | 61.23% |
Matrix_321 | HRD | Not Available | | 61.18% |
Matrix_261 | ATERF-1 | Not Available | | 61.08% |
Matrix_344 | ATERF15; AT4G18450 | Not Available | | 61.02% |
Matrix_17 | WRKY22 | Not Available | | 61.01% |
Matrix_418 | KNAT6; KNAT2 | Not Available | | 60.76% |
Motif_244 | ABRE-like binding site motif | Not Available | | 60.68% |
Motif_291 | ABFs binding site motif | Binding site of trans-acting factor EMBP-1; wheat Em gene;Binding site of ABFs; ABFs (ABRE binding factors) were isolated from Arabidopsis by a yeast one-hybrid screening system; Expression ABFs is induced by ABA and various stress treatment; ABFs belongs to a distinct subfamily of bZIP proteins; Involved in ABA-mediated stress-signaling pathway;A plant leucine zipper protein that recognizes an abscisic acid response element | | 60.61% |
Matrix_5 | AT5G51190; ERF104 | Not Available | | 60.30% |
Matrix_234 | RAP2.3 | Not Available | | 60.25% |
Matrix_307 | RGL2; RGL3 | Not Available | | 60.17% |
Matrix_450 | SPL7 | Not Available | | 60.12% |
Motif_641 | LRENPCABE | LRE; A positive light regulatory element in tobacco CAB (cab-E) gene; Located at -241 | | 60.03% |
Matrix_253 | ETT | Not Available | | 59.87% |
Matrix_113 | ABI5 | Not Available | | 59.79% |
Matrix_31 | SPL1 | Not Available | | 59.71% |
Matrix_190 | ATERF1 | Not Available | | 59.51% |
Matrix_374 | AT5G07580; AT5G61590 | Not Available | | 59.39% |
Matrix_493 | AT1G22985; AT1G71130 | Not Available | | 59.37% |
Motif_232 | ABADESI1 | Responsive to ABA and desiccation; Motif I of rice rab16A-D (initially called rab-21); Expressed in seeds late during embryogenesis; Induced by ABA and osmotic stress in vegetative tissues; Contains ACGT motif; transacting factor: TAF-1 | | 58.90% |
Matrix_91 | CRF3 | Not Available | | 58.81% |
Motif_92 | ABREATRD22 | ABRE (ABA responsive element) in Arabidopsis dehydration-responsive gene rd22 | | 58.69% |
Matrix_504 | WRKY40 | Not Available | | 58.64% |
Matrix_188 | SPL4 | Not Available | | 58.08% |
Motif_71 | WRKY63 | ABO3, a WRKY transcription factor, mediates plant responses to abscisic acid and drought tolerance in Arabidopsis | | 58.05% |
Matrix_399 | TGA1 | Not Available | | 57.98% |
Matrix_146 | ORA47 | Not Available | | 57.95% |
Matrix_53 | MYC3 | Not Available | | 57.87% |
Matrix_378 | ATERF1 | Not Available | | 57.70% |
Matrix_199 | AT1G69170; SPL9; SPL15; SPL13A; SPL13B | Not Available | | 57.61% |
Matrix_33 | SPL11; SPL10; SPL2 | Not Available | | 57.43% |
Matrix_65 | POC1; PIL1 | Not Available | | 57.32% |
Matrix_484 | ATERF13 | Not Available | | 57.22% |
Matrix_221 | SPL7 | Not Available | | 56.93% |
Motif_286 | SEBFCONSSTPR10A | Binding site of the potato silencing element binding factor (SEBF) gene found in promoter of pathogenesis-related gene (PR-10a); Located between -45 and -39; Similar to the auxin response element | | 56.93% |
Matrix_252 | RAP2.6 | Not Available | | 56.86% |
Matrix_448 | ATERF6 | Not Available | | 56.85% |
Matrix_274 | EDF3 | Not Available | | 56.74% |
Matrix_473 | RRTF1 | Not Available | | 56.74% |
Matrix_272 | DEAR4 | Not Available | | 56.53% |
Matrix_45 | DRN | Not Available | | 56.34% |
Motif_625 | AtERF-4; AtERF-3 | Arabidopsis ethylene-responsive element binding factors act as transcriptional activators or repressors of GCC box-mediated gene expression | | 56.26% |
Motif_50 | AtERF-7; AtERF-4; AtERF-3; AtERF-1; AtERF-2; AtERF-5 | Arabidopsis ethylene-responsive element binding factors act as transcriptional activators or repressors of GCC box-mediated gene expression. Role of an Arabidopsis AP2/EREBP-type transcriptional repressor in abscisic acid and drought stress responses | | 56.26% |
Motif_60 | AtERF-4; AtERF-3 | Arabidopsis ethylene-responsive element binding factors act as transcriptional activators or repressors of GCC box-mediated gene expression | | 56.22% |
Matrix_470 | WRKY18 | Not Available | | 56.20% |
Matrix_333 | GATA3 | Not Available | | 56.07% |
Motif_558 | BOXIIPCCHS | Core of Box II/G box found in the parsley chs genes; Essential for light regulation | | 56.02% |
Matrix_165 | KNAT1 | Not Available | | 55.97% |
Matrix_139 | OBF5 | Not Available | | 55.86% |
Motif_457 | AtERF-4; AtERF-3; AtERF-1; AtERF-2; AtERF-5 | Arabidopsis ethylene-responsive element binding factors act as transcriptional activators or repressors of GCC box-mediated gene expression | | 55.77% |
Matrix_147 | ERF3; AT1G80580 | Not Available | | 55.70% |
Motif_633 | PE2FNTRNR1A | pE2F (proximal E2F elemen) at -143bp of tobacco RNR1a promoter; E2F factors involved in gene induction at the G1/S transition of the cell cycle; Important for regulating specific RNR1a (ribonucleotide reductase large subunit) gene expression in response to UV-C irradiation | | 55.59% |
Matrix_41 | anac058 | Not Available | | 55.57% |
Matrix_143 | GATA14; GATA6; GATA5 | Not Available | | 55.57% |
Matrix_362 | DEAR3 | Not Available | | 55.46% |
Matrix_180 | SPL1 | Not Available | | 55.21% |
Matrix_206 | CUC1; ANAC100 | Not Available | | 55.18% |
Motif_485 | NRRBNEXTA | NRR (negative regulatory region) in promoter region of Brassica napus extA extensin gene; Removal of this region leads to expression in all tissues within the stem internode, petiole and root | | 55.11% |
Matrix_334 | AT3G23230 | Not Available | | 54.96% |
Matrix_506 | DRNL; ATERF-4 | Not Available | | 54.93% |
Matrix_426 | CRF1; CRF2 | Not Available | | 54.91% |
Matrix_85 | SPL5 | Not Available | | 54.88% |
Motif_388 | CPRFPCCHS; AtbZIP1 | BoxII; Binding site of CPRF-1, -2, -3 and -4(Common Plant Regulatory Factor) in the parsley light responsive chalcone synthase (CHS) gene promoter; CPRF proteins are bZIP class transcription factors; CPRF proteins participates in the light-mediated activation of the CHS gene in parsley; ACE; The proline-rich domains of CPRF1 and 4 activate transcription; CPRF1-containing bZIP heterodimer interacts with ACE in vivo; ACE; Binding site of parsley bZIP factors CPRF1 and 4; Found in the parsley light responsive chalcone synthase (CHS) gene promoter; The proline-rich domains of CPRF1 and 4 activate transcription; CPRF1-containing bZIP heterodimer interacts with ACE in vivo; The arabidopsis bZIP1 transcription factor is involved in sugar signaling, protein networking, and DNA binding | | 54.88% |
Matrix_377 | AT1G75490; DREB2C; AT2G40350; AT5G18450 | Not Available | | 54.84% |
Matrix_223 | MYB60; ATMYB31; ATMYB30; MYB94; MYBCOV1 | Not Available | | 54.84% |
Matrix_328 | AT1G76580 | Not Available | | 54.51% |
Matrix_86 | CRF5; CRF6; CRF4 | Not Available | | 54.41% |
Matrix_137 | SPL1; SPL12 | Not Available | | 54.40% |
Matrix_231 | HDG2; HDG3; ATML1; HB-7 | Not Available | | 54.24% |
Matrix_243 | RAP2.12; RAP2.2 | Not Available | | 54.17% |
Matrix_469 | NAC041; NAC083 | Not Available | | 54.10% |
Motif_82 | ACGTSEED3 | ACGT motif related to seed expression; Gene: synthetic; wild-type motif (Iwt) containing G-box-related sequence; transacting factor: bZIP; A tobacco bZip transcription activator (TAF-1) binding site | | 54.09% |
Motif_145 | MYCATERD1 | MYC recognition sequence (from -466 to -461) necessary for expression of erd1 (early responsive to dehydration) in dehydrated Arabidopsis; NAC protein bound specifically to the CATGTG motif; NAC protein bound specifically to the CATGTG motif | | 53.97% |
Matrix_332 | SPT; ALC | Not Available | | 53.87% |
Matrix_416 | ASL5 | Not Available | | 53.83% |
Matrix_507 | TCP3 | Not Available | | 53.83% |
Matrix_316 | WRKY15; WRKY39; WRKY7; WRKY74 | Not Available | | 53.77% |
Matrix_325 | WRKY4; WRKY3; WRKY58; ATWRKY34; WRKY20; ATWRKY2 | Not Available | | 53.71% |
Matrix_360 | ORA59 | Not Available | | 53.67% |
Motif_293 | NONAMERATH4 | Nonamer motif of Arabidopsis thaliana histone H4 promoter;Identification of cis-elements regulating the expression of an Arabidopsis histone H4 gene | | 53.58% |
Motif_57 | ABREOSRAB21 | ABA responsive element (ABRE) of wheat Em and rice rab21 genes; Proposed consensus sequence for the repeated motif (Em1a and Em1b) of wheat Em gene | | 53.49% |
Matrix_238 | WRKY59; WRKY23; WRKY68 | Not Available | | 53.46% |
Motif_627 | ACGTABREMOTIFA2OSEM | Experimentally determined sequence requirement of ACGT-core of motif A in ABRE of the rice gene, OSEM; DRE and ABRE are interdependent in the ABA-responsive expression of the rd29A in Arabidopsis | | 53.34% |
Matrix_368 | ATWRKY56; WRKY45; WRKY75; WRKY24 | Not Available | | 53.25% |
Motif_122 | TGTCACACMCUCUMISIN | TGTCACA motif found in the region (from -254 to -215) of cucumisin (a subtilisin-like serine protease) in the fruit of melon; A novel enhancer element necessary for fruit-specific expression of the cucumisin gene | | 53.18% |
Matrix_371 | MYB7; AtMYB6; AtMYB32; ATMYB4 | Not Available | | 53.16% |
Matrix_295 | ERF1 | Not Available | | 52.95% |
Matrix_216 | TCP16 | Not Available | | 52.93% |
Motif_22 | RYREPEATLEGUMINBOX | RY repeat (CATGCAY) or legumin box found in seed-storage protein genes in legume such as soybean | | 52.82% |
Matrix_314 | WRKY65; WRKY14; WRKY35; WRKY69; WRKY16; ATWRKY52 | Not Available | | 52.81% |
Matrix_70 | GATA26 | Not Available | | 52.80% |
Matrix_444 | AT1G19485; AT4G17950 | Not Available | | 52.80% |
Matrix_175 | Dof5.7 | Not Available | | 52.78% |
Matrix_50 | ATERF14; AT5G43410 | Not Available | | 52.76% |
Matrix_419 | TGA9; PAN; TGA6; bZIP65 | Not Available | | 52.72% |
Motif_448 | IRO2OS | OsIRO2-binding core sequence; G-box plus G; Transcription factor OsIRO2 is induced exclusively by Fe deficiency | | 52.70% |
Motif_338 | HY5 | Arabidopsis bZIP protein HY5 directly interacts with light-responsive promoters in mediating light control of gene expression | | 52.68% |
Motif_200 | GBOXLERBCS | G box; Conserved sequence upstream of light-regulated genes; Sequence found in the promoter region of rbcS of tomato and Arabidopsis; Binding with GBF | | 52.60% |
Matrix_335 | HSFB2A | Not Available | | 52.59% |
Matrix_215 | ARF1 | ARF1, a transcription factor that binds to auxin response elements | | 52.46% |
Matrix_500 | WRKY43 | Not Available | | 52.32% |
Motif_685 | PALINDROMICCBOXGM | Palindromic C-box in soybean;bZIP factors, STGA1 and STFs (STF1 and STF2) found in soybean apical hypocotyl, bind to this sequence | | 52.28% |
Matrix_478 | AT1G01250 | Not Available | | 52.22% |
Motif_74 | HY5 | Arabidopsis bZIP protein HY5 directly interacts with light-responsive promoters in mediating light control of gene expression | | 52.20% |
Matrix_171 | LBD3; LBD4 | Not Available | | 52.15% |
Motif_128 | HY5 | Arabidopsis bZIP protein HY5 directly interacts with light-responsive promoters in mediating light control of gene expression | | 52.09% |
Motif_26 | GRF7 | Arabidopsis GROWTH-REGULATING FACTOR7 Functions as a Transcriptional Repressor of Abscisic Acid- and Osmotic Stress-Responsive Genes, Including DREB2A | | 52.03% |
Matrix_27 | ATAIB; ATNIG1 | Not Available | | 52.02% |
Motif_65 | BS1EGCCR | BS1 (binding site 1) found in E. gunnii Cinnamoyl-CoA reductase (CCR) gene promoter; nuclear protein binding site; Required for vascular expression | | 52.01% |
Motif_263 | RYREPEATVFLEB4; ABI3 | RY repeat motif; quantitative seed expression; Gene: Vicia faba LeB4; Soybean glycinin (Gy2); other dicot and monocot seed protein genes; Sph box found in rice Osem gene promoter; Binding site of Arabidopsis B3-domain-containing transcription factor FUS3; TRAB1, bZIP transcription factor, interacts with VP1 and mediates abscisic acid-induced transcritption; FUS3 protein physically interact with two RY elements present in the AtGA3ox promoter;RY repeats are conserved in the 5 prime-flanking region of legume seed protein genes. Gene regulation during late embryogenesis: the RY motif of maturation-specific gene promoters is a direct target of the FUS3 gene product | | 51.94% |
Motif_483 | ABREMOTIFAOSOSEM | motif A ABRE-like sequence found in rice Osem gene promoter; Essential for activation by VP1; Important for regulation by ABA;TRAB1, bZIP transcription factor, interacts with VP1 and mediates abscisic acid-induced transcritption;ABRE motif A found in the promoter of the rice Osem gene; ACGT-containing ABRE; Required for ABA-responsiveness and VP1 activation; Binding site of TRAB1; Motif A and CE3 are functionally equivalent; TRAB1, bZIP transcription factor, interacts with VP1 and mediates abscisic acid-induced transcritption | | 51.93% |
Matrix_73 | DEAR3; RAP2.9; RAP2.10 | Not Available | | 51.87% |
Matrix_357 | WRKY61; WRKY6; WRKY9; WRKY36; WRKY47; WRKY42; WRKY31; WRKY72 | Not Available | | 51.85% |
Motif_320 | AGCBOXNPGLB | AGC box repeated twice in a 61 bp enhancer element in tobacco class I beta-1,3-glucanase (GLB) gene;GCC-box; Binding sequence of Arabidopsis AtERFs; AtERF1,2 and 5 functioned as activators of GCC box-dependent transcription; AtERF3 and 4 acted as repressors; AtERF proteins are stress signal-response factors; EREBP2 binding site; Conserved in most PR-protein genes; Rice MAPK (BWMK1) phosphorylates OS EREBP1, which enhance DNA-binding activity of the factor to the GCC box | | 51.82% |
Matrix_432 | AT1G77920 | Not Available | | 51.78% |
Matrix_241 | HB-1; AT5G44180 | Not Available | | 51.76% |
Matrix_128 | TGA2 | Not Available | | 51.75% |
Motif_603 | SITEIIATCYTC | Site II element found in the promoter regions of cytochrome genes (Cytc-1, Cytc-2) in Arabidopsis; Located between -147 and -156 from the translational starts sites;Overrepresented in the promoters of nuclear genes encoding components of the oxidative phosphorylation (OxPhos) machinery from both Arabidopsis and rice | | 51.73% |
Matrix_424 | MYB59 | Not Available | | 51.67% |
Motif_424 | GATA-1 | Arabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristics | | 51.57% |
Matrix_11 | TRFL5 | Not Available | | 51.57% |
Matrix_405 | DREB2C | Not Available | | 51.56% |
Matrix_517 | ERF12 | Not Available | | 51.55% |
Motif_676 | RNFG1OS | RNFG1 binding site; Box I; RNFG1 is one of two Rice Nuclear Factors required for phloem-specific gene expression of Rice Tungro Bacilliform Virus (RTBV); Box I is found at -3 to +8 of RTBV promoter; See also RNFG2OS | | 51.46% |
Motif_495 | TRANSINITMONOCOTS | Context sequence of translational initiation codon in monocots | | 51.44% |
Matrix_227 | AT1G64620 | Not Available | | 51.43% |
Matrix_235 | WRKY67; WRKY64; WRKY63; WRKY66 | Not Available | | 51.35% |
Motif_52 | GATA-1 | Arabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristics | | 51.33% |
Matrix_203 | GATA9; GATA12 | Not Available | | 51.31% |
Matrix_289 | WRKY25 | Not Available | | 51.24% |
Motif_165 | AP3SV40 | AP-3 binding site consensus sequence in enhancer regions of SV40, MMTV, MLV, IL2 | | 51.18% |
Matrix_505 | GATA8 | Not Available | | 51.11% |
Matrix_340 | HSFC1 | Not Available | | 50.99% |
Matrix_134 | ABF1 | Not Available | | 50.92% |
Matrix_275 | ZAP1 | Characterization of a zinc-dependent transcriptional activator from Arabidopsis | | 50.91% |
Matrix_59 | AT4G00238; AT4G00250 | Not Available | | 50.77% |
Matrix_80 | BIM1 | Not Available | | 50.77% |
Matrix_313 | ATMYB65; MYB33 | Not Available | | 50.73% |
Matrix_44 | CUC3; anac046; NAC3; ANAC087; ATNAC6; CUC2 | Not Available | | 50.72% |
Motif_414 | ABI3 | Gene regulation during late embryogenesis: the RY motif of maturation-specific gene promoters is a direct target of the FUS3 gene product | | 50.70% |
Matrix_520 | ARR14 | Not Available | | 50.67% |
Motif_119 | ABI3 | Gene regulation during late embryogenesis: the RY motif of maturation-specific gene promoters is a direct target of the FUS3 gene product | | 50.61% |
Matrix_148 | WRKY60 | Not Available | | 50.56% |
Matrix_283 | GATA15; GATA17; AT4G16141; GATA22; GATA23; GATA16; GNC | Not Available | | 50.55% |
Matrix_298 | RAV1 | Not Available | | 50.53% |
Matrix_413 | RAV1 | Not Available | | 50.53% |
Motif_37 | AtERF-4 | Arabidopsis ethylene-responsive element binding factors act as transcriptional activators or repressors of GCC box-mediated gene expression | | 50.43% |
Matrix_240 | AT4G29000 | Not Available | | 50.43% |
Matrix_257 | NAC050; ANAC051; anac057; NAC2 | Not Available | | 50.35% |
Matrix_249 | WRKY11 | Not Available | | 50.34% |
Matrix_56 | BZIP17; BZIP28; BZIP49 | Not Available | | 50.34% |
Matrix_224 | ERF1 | Not Available | | 50.29% |
Matrix_293 | WRKY38 | Not Available | | 50.24% |
Matrix_398 | TBP2; ATTRB2 | Not Available | | 50.24% |
Matrix_282 | bZIP60 | Not Available | | 50.20% |
Motif_306 | E2Fb | Arabidopsis E2F1 binds a sequence present in the promoter of S-phase-regulated gene AtCDC6 and is a member of a multigene family with differential activities | | 50.02% |
Matrix_236 | CCA1 | Not Available | | 50.00% |