PLAZA 3.0 Dicots : Binding Sites

Binding sites with simlar sequences

Binding site: Matrix_251
Name: PIF5
Description: Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling

Positional Weight Matrix

Minimum similarity percentage

Binding site	Name	Description	Similarity
Matrix_104	PI	Not Available	72.52%
Matrix_443	AGL15	Not Available	72.23%
Matrix_55	PIF3	Not Available	70.10%
Matrix_403	BZR1	Not Available	69.87%
Matrix_214	AP1	Not Available	69.51%
Matrix_108	PIF4	Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responses	68.81%
Matrix_359	FLC	Not Available	68.30%
Matrix_19	PIF5	Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling	67.96%
Matrix_498	AT2G28710; AT3G46070; AT3G46080; ZAT7	Not Available	67.70%
Matrix_257	NAC050; ANAC051; anac057; NAC2	Not Available	67.20%
Matrix_305	PIF4	Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responses	66.49%
Matrix_191	PIF5	Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling	66.29%
Matrix_153	AP2	Not Available	66.26%
Matrix_122	ABF1; AREB2	Not Available	65.07%
Matrix_449	BIM2	Not Available	64.91%
Matrix_158	AT1G03040; LRL1; UNE12; LRL2; LRL3	Not Available	64.68%
Matrix_514	DYT1	Regulation of the Arabidopsis anther transcriptome by DYT1 for pollen development	64.58%
Matrix_200	PIL5; AT4G28790; AT4G28800; AT4G28811; AT4G28815	Not Available	64.53%
Matrix_323	BIM3	Not Available	64.49%
Matrix_330	MYC2; TT8	Not Available	64.20%
Matrix_480	BES1	Not Available	64.18%
Matrix_465	MYC4	Not Available	63.76%
Matrix_120	BEE2	Not Available	63.20%
Matrix_389	ILR3	Not Available	62.80%
Matrix_77	PRR5	Not Available	62.46%
Matrix_338	AP2	Not Available	62.28%
Motif_154	ABREBNNAPA	ABRE of napA storage-protein gene of Brassica napus; ABA responsive element; dist B ABRE mediated transactivation by ABI3 adn ABI3-dependent response to ABA; a tetramer of the composite RY/G complex mediated only ABA-independent transactivation by ABI3; B2 domain of ABI3 is necessary for ABA-independent and ABA-dependent activation through the dist B ABRE; B3 domain of ABI3 interacts with the RY/G complex	61.86%
Matrix_194	HYH; HY5	Not Available	60.88%
Matrix_331	GBF1	Not Available	60.85%
Matrix_113	ABI5	Not Available	60.66%
Matrix_80	BIM1	Not Available	60.42%
Matrix_156	POC1	Not Available	60.25%
Matrix_213	ATHB22	Not Available	59.61%
Matrix_109	GBF3	Not Available	59.56%
Matrix_404	OBP4	Not Available	59.31%
Matrix_369	AT2G18300	Not Available	59.24%
Matrix_424	MYB59	Not Available	59.24%
Motif_498	SGBFGMGMAUX28	bZIP proteins SGBF-1 and SGBF-2 binding site in soybean GmAux28 gene promoter	59.21%
Matrix_129	ABF1	Not Available	59.06%
Matrix_229	CDC5	A cdc5+ homolog of a higher plant, Arabidopsis thaliana	58.93%
Matrix_301	PIL5	Not Available	58.38%
Matrix_306	TGA1	TGA1 and G-box binding factors: two distinct classes of Arabidopsis leucine zipper proteins compete for the G-box-like element TGACGTGG	58.26%
Matrix_313	ATMYB65; MYB33	Not Available	58.25%
Matrix_299	PFG3	Not Available	57.83%
Matrix_315	MYB111	Not Available	57.81%
Matrix_36	RAV1_1	RAV1, a novel DNA-binding protein, binds to bipartite recognition sequence through two distinct DNA-binding domains uniquely found in higher plants	57.62%
Matrix_211	MYB3	Not Available	57.47%
Matrix_469	NAC041; NAC083	Not Available	57.39%
Matrix_85	SPL5	Not Available	57.15%
Matrix_41	anac058	Not Available	57.10%
Matrix_186	FHY3	Not Available	56.92%
Matrix_33	SPL11; SPL10; SPL2	Not Available	56.89%
Matrix_440	LFY	Not Available	56.88%
Matrix_225	MYB52	Not Available	56.87%
Matrix_450	SPL7	Not Available	56.83%
Matrix_337	MYB46	Not Available	56.74%
Matrix_14	ZCW32; AT5G62610	Not Available	56.70%
Matrix_68	AtMYB77	More than 80 R2R3-MYB regulatory genes in the genome of Arabidopsis thaliana. Plant J 14: 273-84	56.68%
Matrix_47	AtMYB77	Not Available	56.68%
Matrix_183	BES1	A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana	56.53%
Matrix_307	RGL2; RGL3	Not Available	56.28%
Motif_418	ABRE2HVA22	ABRE2 of barley HVA22 gene; G-box; component of ABA response complex in HVA22 gene; see ABRE3 of HVA22 gene; see CE1 (coupling element 1 = TGCCACCGG)	56.15%
Matrix_31	SPL1	Not Available	56.08%
Matrix_151	ASIL1	Not Available	56.07%
Motif_507	ABASEED1	ABA regulation; seed expression; Gene: carrot Dc3; Transacting factor: bZIP; Contains ACGT motif	55.75%
Matrix_206	CUC1; ANAC100	Not Available	55.69%
Matrix_339	bHLH104	Not Available	55.58%
Matrix_466	PRR5	Not Available	55.50%
Matrix_199	AT1G69170; SPL9; SPL15; SPL13A; SPL13B	Not Available	55.48%
Matrix_247	PIF3	Not Available	55.33%
Matrix_438	AtbZIP63	Not Available	54.95%
Matrix_254	MYB52	Not Available	54.91%
Matrix_332	SPT; ALC	Not Available	54.89%
Matrix_273	ANAC55	Not Available	54.89%
Motif_197	HY5	Arabidopsis bZIP protein HY5 directly interacts with light-responsive promoters in mediating light control of gene expression	54.87%
Matrix_59	AT4G00238; AT4G00250	Not Available	54.80%
Matrix_52	ZAT18	Not Available	54.76%
Matrix_264	ATAREB1	Not Available	54.62%
Matrix_188	SPL4	Not Available	54.56%
Matrix_12	EIN3; EIL2	Not Available	54.46%
Matrix_433	ATERF1	Not Available	54.44%
Matrix_326	AT5G07310; Rap2.6L; AT5G61890	Not Available	54.41%
Motif_499	AtMYC2	A basic helix-loop-helix transcription factor in Arabidopsis, MYC2, acts as a repressor of blue light-mediated photomorphogenic growth	54.41%
Motif_566	AREB1; AREB2	Interaction between two cis-acting elements, ABRE and DRE, in ABA-dependent expression of Arabidopsis rd29A gene in response to dehydration and high-salinity stresses	54.34%
Motif_314	HY5AT	G box; Binding site of Arabidopsis bZIP protein HY5; HY5 is constitutively nuclear localized and is involved in light regulation of transcriptional activity of the promoters containing the G-box;HY5 abundance peaks in early seedling development, consistent with its role in promoting photomorphogenesis; HY5 stability and activity is regulated by phosphorylation in its COP1 binding domain; HY5 regulates stimulus-induced development of root and hypocotyl	54.11%
Matrix_499	ARR18	Not Available	54.01%
Matrix_355	ERF10; ERF11	Not Available	53.96%
Matrix_351	HAT9; ATHB-4; ATHB2; HAT22; HAT14	Not Available	53.92%
Matrix_495	HD-GL2-1; ANL2	Not Available	53.81%
Matrix_287	ERF2	Not Available	53.74%
Motif_92	ABREATRD22	ABRE (ABA responsive element) in Arabidopsis dehydration-responsive gene rd22	53.50%
Matrix_456	bZIP60	Not Available	53.48%
Matrix_171	LBD3; LBD4	Not Available	53.46%
Matrix_249	WRKY11	Not Available	53.40%
Motif_560	GLUTECOREOS	Core site required for binding of the trans-acting factor in the promoter region of rice glutelin (type 2 glutelin gene family)	53.37%
Motif_571	GBOXSORBCS1	G-box found in the spinach RBCS-1 gene promoter; Located between -219 and -212; G-box trimer confers relatively high level expression in roots	53.35%
Matrix_416	ASL5	Not Available	53.27%
Motif_406	ABREBZMRAB28	ABA-responsive element (ABRE B) found at -105 to -96 in maize rab28; Maize rab28 is ABA-inducible in embryos and vegetative tissues	53.24%
Matrix_322	NST3; ANAC015; BRN2	Not Available	53.23%
Matrix_278	AtbZIP44	Not Available	53.22%
Matrix_448	ATERF6	Not Available	53.20%
Matrix_427	ZAT14	Not Available	53.18%
Matrix_304	AtSPL3	Functional dissection of the plant-specific SBP-domain: overlap of the DNA-binding and nuclear localization domains	53.16%
Matrix_231	HDG2; HDG3; ATML1; HB-7	Not Available	53.14%
Matrix_377	AT1G75490; DREB2C; AT2G40350; AT5G18450	Not Available	53.13%
Matrix_118	PIF3_2	Direct targeting of light signals to a promoter element-bound transcription factor	53.10%
Matrix_345	POC1	Not Available	53.10%
Matrix_502	AT3G13040	Not Available	53.07%
Matrix_458	MGP; AT1G14580; AtIDD7; AtIDD5; AtIDD4; AtIDD12; JKD; AT5G66730	Not Available	53.06%
Matrix_97	APRR2	Not Available	53.04%
Matrix_209	RAP2.6	Not Available	52.99%
Matrix_316	WRKY15; WRKY39; WRKY7; WRKY74	Not Available	52.91%
Motif_599	LREBOXIIPCCHS1; HY5	BoxII; Light responsive element (LRE) found in the parsley CHS-1 (chalcone synthase-1) gene promoter; Required for light responsiveness; nuclear protein binding site; Highly conserved in various light inducible gene promoters; Arabidopsis bZIP protein HY5 directly interacts with light-responsive promoters in mediating light control of gene expression	52.88%
Matrix_500	WRKY43	Not Available	52.82%
Matrix_107	AtSPL3	Not Available	52.80%
Matrix_58	WRKY55; ATWRKY54; WRKY46; WRKY70; AtWRKY41; WRKY53; WRKY30	Not Available	52.79%
Matrix_140	ATHB5	DNA-binding and dimerization preferences of Arabidopsis homeodomain-leucine zipper transcription factors in vitro	52.74%
Matrix_415	WRKY27	Not Available	52.72%
Matrix_300	bZIP68; bZIP16	Not Available	52.70%
Matrix_56	BZIP17; BZIP28; BZIP49	Not Available	52.69%
Matrix_221	SPL7	Not Available	52.67%
Matrix_418	KNAT6; KNAT2	Not Available	52.61%
Motif_338	HY5	Arabidopsis bZIP protein HY5 directly interacts with light-responsive promoters in mediating light control of gene expression	52.61%
Matrix_321	HRD	Not Available	52.53%
Matrix_455	MYB111	Not Available	52.52%
Matrix_101	ERF5	Not Available	52.47%
Matrix_494	OBP4	Not Available	52.47%
Matrix_8	KAN1	Not Available	52.44%
Matrix_226	GATA1	Not Available	52.44%
Matrix_280	TCP24; TCP1; BRC2; ATTCP18	Not Available	52.43%
Matrix_3	WRKY48	Not Available	52.43%
Motif_232	ABADESI1	Responsive to ABA and desiccation; Motif I of rice rab16A-D (initially called rab-21); Expressed in seeds late during embryogenesis; Induced by ABA and osmotic stress in vegetative tissues; Contains ACGT motif; transacting factor: TAF-1	52.41%
Matrix_461	ATHB12	Not Available	52.39%
Matrix_193	RAV1	Not Available	52.34%
Matrix_265	NGA3	Not Available	52.34%
Matrix_296	GBF2	Not Available	52.32%
Matrix_202	WRKY71; WRKY28; WRKY8	Not Available	52.23%
Matrix_317	AT1G06070; AT2G31370; AT2G40620	Not Available	52.23%
Matrix_91	CRF3	Not Available	52.21%
Matrix_492	ETT	Not Available	52.15%
Motif_689	ANAC092	NAC Transcription Factor ORE1 and Senescence-Induced BIFUNCTIONAL NUCLEASE1 (BFN1) Constitute a Regulatory Cascade in Arabidopsis	52.11%
Motif_112	GBOX10NT	One of 11 G-box sequences in tobacco; Required for high-level constitutive expression in seed, leaf, root, axillary bud, almost all parts of flower buds and pollen	52.09%
Matrix_435	ATHB51	Not Available	52.09%
Matrix_314	WRKY65; WRKY14; WRKY35; WRKY69; WRKY16; ATWRKY52	Not Available	52.08%
Matrix_493	AT1G22985; AT1G71130	Not Available	52.08%
Matrix_343	AT2G33710	Not Available	52.08%
Matrix_409	DEAR3	Not Available	52.07%
Matrix_293	WRKY38	Not Available	52.06%
Matrix_263	WRKY33; WRKY19; WRKY32	Not Available	52.06%
Matrix_256	IXR11; KNAT5; KNAT4; KNAT3	Not Available	51.89%
Matrix_75	WRKY29	Not Available	51.85%
Matrix_50	ATERF14; AT5G43410	Not Available	51.84%
Matrix_328	AT1G76580	Not Available	51.81%
Matrix_17	WRKY22	Not Available	51.76%
Matrix_131	HDG12; EDT1; GL2; HDG8	Not Available	51.74%
Motif_644	ABREDISTBBNNAPA	dist B (distal portion of B-box) found in napA gene of Brassica napus; Shows similarity to ABRE; Found between -148 and -124; Required for seed specific expression and ABA responsiveness;dist B ABRE mediated transactivation by ABI3 adn ABI3-dependent response to ABA; a tetramer of the composite RY/G complex mediated only ABA-independent transactivation by ABI3; B2 domain of ABI3 is necessary for ABA-independent and ABA-dependent activation through the dist B ABRE	51.68%
Matrix_446	LBD16	Not Available	51.62%
Matrix_93	YAB5	Not Available	51.56%
Matrix_518	AT2G21230	Not Available	51.55%
Motif_120	ABRETAEM	ABRE (ABA responsive element) found in wheat Em gene; transacting factor: EMBP-1; EMBP-1 binds to CACGTGGC	51.45%
Matrix_71	ATHB7	Not Available	51.35%
Matrix_286	GATA7	Not Available	51.32%
Matrix_467	RAV1	Not Available	51.32%
Matrix_34	RAV1_2	RAV1, a novel DNA-binding protein, binds to bipartite recognition sequence through two distinct DNA-binding domains uniquely found in higher plants	51.32%
Matrix_477	RAV1	Not Available	51.32%
Matrix_268	EMB2749; VND5; SMB; VND1; ANAC076; NAC101; ANAC105	Not Available	51.28%
Matrix_196	TCP20; AT5G41030	Not Available	51.26%
Matrix_374	AT5G07580; AT5G61590	Not Available	51.26%
Matrix_508	APL; AT3G12730; AT3G24120; UNE16	Not Available	51.23%
Motif_617	ABRE3HVA1	ABA responsive element, ABRE3, found in barley HVA1 gene encoding a class 3 late embryogenesis-abundant protein; stress response	51.22%
Matrix_463	HAT3.1	Not Available	51.20%
Matrix_227	AT1G64620	Not Available	51.14%
Matrix_233	MYC3	Not Available	51.13%
Matrix_437	MYC2	Not Available	51.09%
Matrix_182	ATHB6	Not Available	51.02%
Matrix_302	HAT1; HAT2	Not Available	51.00%
Matrix_392	ARR2	Not Available	50.99%
Motif_616	BZIP12; ABI5	The homologous ABI5 and EEL transcription factors function antagonistically to fine-tune gene expression during late embryogenesis	50.98%
Matrix_9	AT5G04760	Not Available	50.94%
Matrix_259	AT1G50680; AT1G51120	Not Available	50.94%
Matrix_197	NAP	Not Available	50.83%
Matrix_370	WRKY50; WRKY51	Not Available	50.83%
Matrix_475	AT5G64220	Not Available	50.80%
Matrix_491	AT1G68670; AT3G25790	Not Available	50.77%
Matrix_161	MYBC1; AT3G10760; LUX; AT5G05090; AT5G59570	Not Available	50.77%
Matrix_271	AT3G16350	Not Available	50.71%
Matrix_284	KAN2; KAN3; KAN; KAN4	Not Available	50.70%
Matrix_308	INO	Not Available	50.70%
Matrix_406	ATERF-7	Not Available	50.68%
Matrix_329	WRKY12	Not Available	50.67%
Matrix_380	ATMYR1	Not Available	50.67%
Matrix_511	AT1G05805; AT1G35460; AT1G51140; AT2G42280; AT2G43140; AT4G09180	Not Available	50.63%
Motif_211	ABREMOTIFIOSRAB16B	Motif I found in the promoter of rice rab16B gene; Motif I and motif III are both required for ABA responsiveness; However, each can substitute for the other	50.61%
Matrix_420	ANAC58	Not Available	50.60%
Matrix_261	ATERF-1	Not Available	50.60%
Matrix_472	ZN_C2_H2	Not Available	50.57%
Motif_527	LFY	Structural basis for LEAFY floral switch function and similarity with helix-turn-helix proteins	50.54%
Motif_159	LFY	Structural basis for LEAFY floral switch function and similarity with helix-turn-helix proteins	50.54%
Motif_686	LFY	Structural basis for LEAFY floral switch function and similarity with helix-turn-helix proteins	50.54%
Motif_289	LFY	Structural basis for LEAFY floral switch function and similarity with helix-turn-helix proteins	50.54%
Motif_300	ACGTROOT1; HY5	Arabidopsis bZIP protein HY5 directly interacts with light-responsive promoters in mediating light control of gene expression. ACGT motif related to root expression; Gene: synthetic; perfect palindromic sequence (PA) containing G-box-related sequence; transacting factor: TAF-1; Binding of SGBF-1 (a Soybean G-box binding bZIP transcription factor) to ABRE is enhanced by SCOF-1 (a zinc finger protein ); Transcription of SCOF-1 is induced by low temperature and ABA	50.52%
Matrix_116	ANAC55	Not Available	50.43%
Motif_134	ANAC092	NAC Transcription Factor ORE1 and Senescence-Induced BIFUNCTIONAL NUCLEASE1 (BFN1) Constitute a Regulatory Cascade in Arabidopsis	50.40%
Matrix_20	ANAC030; NST1; NAC066	Not Available	50.40%
Motif_400	ABREAZMRAB28	ABA-responsive element (ABRE A) found at -148 to -139 in maize rab28; Maize rab28 is ABA-inducible in embryos and vegetative tissues	50.40%
Matrix_454	AT1G77200; ATERF38; AT4G16750; AT5G52020	Not Available	50.39%
Matrix_69	AT2G03500	Not Available	50.35%
Matrix_282	bZIP60	Not Available	50.28%
Matrix_195	GATA2; GATA4	Not Available	50.24%
Matrix_376	WRKY45	Not Available	50.16%
Matrix_167	ZAT6	Not Available	50.16%
Matrix_44	CUC3; anac046; NAC3; ANAC087; ATNAC6; CUC2	Not Available	50.12%
Motif_631	MARARS	ARS element; Motif found in SAR (MAR)	50.12%
Matrix_320	MYC4	Not Available	50.11%
Matrix_137	SPL1; SPL12	Not Available	50.04%
Matrix_384	ATWRKY17	Not Available	50.03%