PLAZA 3.0 Dicots : Binding Sites

Binding sites with simlar sequences

Binding site: Matrix_194
Name: HYH; HY5
Description: Not Available

Positional Weight Matrix

Minimum similarity percentage

Binding site	Name	Description	Similarity
Matrix_338	AP2	Not Available	93.51%
Matrix_214	AP1	Not Available	81.71%
Matrix_443	AGL15	Not Available	79.72%
Matrix_359	FLC	Not Available	75.67%
Matrix_466	PRR5	Not Available	75.59%
Matrix_403	BZR1	Not Available	75.30%
Matrix_345	POC1	Not Available	74.97%
Matrix_118	PIF3_2	Direct targeting of light signals to a promoter element-bound transcription factor	74.97%
Matrix_191	PIF5	Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling	70.43%
Matrix_264	ATAREB1	Not Available	70.02%
Matrix_77	PRR5	Not Available	69.55%
Matrix_192	FHY3/FAR1	Not Available	69.49%
Matrix_49	FHY3/FAR1	Not Available	68.69%
Matrix_24	POC1	Not Available	68.64%
Matrix_15	PIF3_1	Direct targeting of light signals to a promoter element-bound transcription factor	68.64%
Matrix_104	PI	Not Available	68.46%
Matrix_305	PIF4	Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responses	68.25%
Matrix_369	AT2G18300	Not Available	67.99%
Matrix_55	PIF3	Not Available	67.47%
Matrix_108	PIF4	Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responses	66.77%
Matrix_217	BES1	A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana	66.44%
Matrix_514	DYT1	Regulation of the Arabidopsis anther transcriptome by DYT1 for pollen development	65.95%
Matrix_251	PIF5	Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling	65.77%
Matrix_153	AP2	Not Available	64.77%
Matrix_356	PRR5	Not Available	64.26%
Matrix_498	AT2G28710; AT3G46070; AT3G46080; ZAT7	Not Available	63.51%
Matrix_186	FHY3	Not Available	62.36%
Matrix_19	PIF5	Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling	62.33%
Motif_314	HY5AT	G box; Binding site of Arabidopsis bZIP protein HY5; HY5 is constitutively nuclear localized and is involved in light regulation of transcriptional activity of the promoters containing the G-box;HY5 abundance peaks in early seedling development, consistent with its role in promoting photomorphogenesis; HY5 stability and activity is regulated by phosphorylation in its COP1 binding domain; HY5 regulates stimulus-induced development of root and hypocotyl	62.22%
Matrix_34	RAV1_2	RAV1, a novel DNA-binding protein, binds to bipartite recognition sequence through two distinct DNA-binding domains uniquely found in higher plants	60.54%
Matrix_467	RAV1	Not Available	60.54%
Matrix_477	RAV1	Not Available	60.54%
Matrix_257	NAC050; ANAC051; anac057; NAC2	Not Available	60.03%
Matrix_438	AtbZIP63	Not Available	59.92%
Matrix_480	BES1	Not Available	59.70%
Motif_635	LFY	Structural basis for LEAFY floral switch function and similarity with helix-turn-helix proteins	59.31%
Motif_504	LFY	Structural basis for LEAFY floral switch function and similarity with helix-turn-helix proteins	59.31%
Motif_686	LFY	Structural basis for LEAFY floral switch function and similarity with helix-turn-helix proteins	59.02%
Motif_159	LFY	Structural basis for LEAFY floral switch function and similarity with helix-turn-helix proteins	59.02%
Motif_527	LFY	Structural basis for LEAFY floral switch function and similarity with helix-turn-helix proteins	59.02%
Motif_289	LFY	Structural basis for LEAFY floral switch function and similarity with helix-turn-helix proteins	59.02%
Matrix_123	FUSCA3	Not Available	59.01%
Matrix_278	AtbZIP44	Not Available	58.92%
Matrix_290	AP2	Not Available	58.90%
Motif_154	ABREBNNAPA	ABRE of napA storage-protein gene of Brassica napus; ABA responsive element; dist B ABRE mediated transactivation by ABI3 adn ABI3-dependent response to ABA; a tetramer of the composite RY/G complex mediated only ABA-independent transactivation by ABI3; B2 domain of ABI3 is necessary for ABA-independent and ABA-dependent activation through the dist B ABRE; B3 domain of ABI3 interacts with the RY/G complex	58.42%
Matrix_433	ATERF1	Not Available	57.87%
Matrix_200	PIL5; AT4G28790; AT4G28800; AT4G28811; AT4G28815	Not Available	57.65%
Matrix_122	ABF1; AREB2	Not Available	57.36%
Matrix_183	BES1	A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana	56.99%
Matrix_449	BIM2	Not Available	56.68%
Matrix_499	ARR18	Not Available	56.42%
Matrix_448	ATERF6	Not Available	56.34%
Motif_120	ABRETAEM	ABRE (ABA responsive element) found in wheat Em gene; transacting factor: EMBP-1; EMBP-1 binds to CACGTGGC	56.33%
Matrix_158	AT1G03040; LRL1; UNE12; LRL2; LRL3	Not Available	56.26%
Matrix_323	BIM3	Not Available	56.17%
Matrix_113	ABI5	Not Available	56.12%
Motif_30	HSELIKENTACIDICPR1	HSE-like motif in -56 region of acidic PR1 gene of tobacco; not found in basic PR1 gene	55.56%
Matrix_156	POC1	Not Available	55.43%
Matrix_419	TGA9; PAN; TGA6; bZIP65	Not Available	55.41%
Matrix_213	ATHB22	Not Available	55.29%
Matrix_330	MYC2; TT8	Not Available	55.21%
Matrix_339	bHLH104	Not Available	55.02%
Matrix_465	MYC4	Not Available	54.79%
Matrix_107	AtSPL3	Not Available	54.73%
Matrix_304	AtSPL3	Functional dissection of the plant-specific SBP-domain: overlap of the DNA-binding and nuclear localization domains	54.73%
Matrix_172	BES1	A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana	54.73%
Motif_300	ACGTROOT1; HY5	Arabidopsis bZIP protein HY5 directly interacts with light-responsive promoters in mediating light control of gene expression. ACGT motif related to root expression; Gene: synthetic; perfect palindromic sequence (PA) containing G-box-related sequence; transacting factor: TAF-1; Binding of SGBF-1 (a Soybean G-box binding bZIP transcription factor) to ABRE is enhanced by SCOF-1 (a zinc finger protein ); Transcription of SCOF-1 is induced by low temperature and ABA	54.41%
Matrix_404	OBP4	Not Available	54.24%
Matrix_298	RAV1	Not Available	54.13%
Matrix_36	RAV1_1	RAV1, a novel DNA-binding protein, binds to bipartite recognition sequence through two distinct DNA-binding domains uniquely found in higher plants	54.13%
Matrix_413	RAV1	Not Available	54.13%
Motif_542	ABI5; AtMYC2; HY5	A basic helix-loop-helix transcription factor in Arabidopsis, MYC2, acts as a repressor of blue light-mediated photomorphogenic growth. Arabidopsis bZIP protein HY5 directly interacts with light-responsive promoters in mediating light control of gene expression. The homologous ABI5 and EEL transcription factors function antagonistically to fine-tune gene expression during late embryogenesis	54.12%
Matrix_120	BEE2	Not Available	54.05%
Matrix_161	MYBC1; AT3G10760; LUX; AT5G05090; AT5G59570	Not Available	54.01%
Matrix_456	bZIP60	Not Available	53.90%
Matrix_209	RAP2.6	Not Available	53.88%
Matrix_33	SPL11; SPL10; SPL2	Not Available	53.85%
Matrix_256	IXR11; KNAT5; KNAT4; KNAT3	Not Available	53.72%
Matrix_502	AT3G13040	Not Available	53.50%
Matrix_491	AT1G68670; AT3G25790	Not Available	53.50%
Matrix_68	AtMYB77	More than 80 R2R3-MYB regulatory genes in the genome of Arabidopsis thaliana. Plant J 14: 273-84	53.49%
Matrix_47	AtMYB77	Not Available	53.49%
Matrix_277	RAP2.6	Not Available	53.49%
Matrix_50	ATERF14; AT5G43410	Not Available	53.43%
Matrix_324	AT2G01060	Not Available	53.39%
Motif_112	GBOX10NT	One of 11 G-box sequences in tobacco; Required for high-level constitutive expression in seed, leaf, root, axillary bud, almost all parts of flower buds and pollen	53.35%
Matrix_331	GBF1	Not Available	53.27%
Matrix_211	MYB3	Not Available	53.26%
Matrix_129	ABF1	Not Available	53.26%
Matrix_176	MYB98	Not Available	53.24%
Matrix_406	ATERF-7	Not Available	53.23%
Matrix_228	TGA2	Not Available	53.23%
Matrix_247	PIF3	Not Available	53.17%
Matrix_301	PIL5	Not Available	53.15%
Matrix_361	AT1G25550	Not Available	53.10%
Matrix_80	BIM1	Not Available	53.09%
Matrix_389	ILR3	Not Available	53.09%
Matrix_508	APL; AT3G12730; AT3G24120; UNE16	Not Available	53.07%
Matrix_418	KNAT6; KNAT2	Not Available	53.07%
Matrix_69	AT2G03500	Not Available	53.03%
Matrix_16	AT3G04450; PHL1	Not Available	53.00%
Matrix_43	AG	Not Available	53.00%
Matrix_445	AG	Not Available	53.00%
Matrix_98	AG	Isolation and characterization of the binding sequences for the product of the Arabidopsis floral homeotic gene AGAMOUS	53.00%
Matrix_428	SEP4	Not Available	52.97%
Matrix_273	ANAC55	Not Available	52.96%
Motif_418	ABRE2HVA22	ABRE2 of barley HVA22 gene; G-box; component of ABA response complex in HVA22 gene; see ABRE3 of HVA22 gene; see CE1 (coupling element 1 = TGCCACCGG)	52.94%
Matrix_195	GATA2; GATA4	Not Available	52.93%
Matrix_462	ATERF-8	Not Available	52.92%
Motif_173	HSE	HSE (heat shock response element); consensus sequence found in the promoter regions of heat shock protein genes; HSF binding site; HsfA3, a new member of the Hsf (heat stress transcription factor) family; was isolated by yeast two-hybrid screening, using HsfA1 as a bait; HsfA3 is a single copy gene with all conserved sequence elements characteristic of a heat stress transcription factor	52.92%
Matrix_282	bZIP60	Not Available	52.91%
Motif_599	LREBOXIIPCCHS1; HY5	BoxII; Light responsive element (LRE) found in the parsley CHS-1 (chalcone synthase-1) gene promoter; Required for light responsiveness; nuclear protein binding site; Highly conserved in various light inducible gene promoters; Arabidopsis bZIP protein HY5 directly interacts with light-responsive promoters in mediating light control of gene expression	52.89%
Matrix_22	BES1	A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana	52.84%
Matrix_28	SEP1	Not Available	52.83%
Matrix_222	AGL2	DNA binding properties of two Arabidopsis MADS domain proteins: binding consensus and dimer formation	52.83%
Matrix_446	LBD16	Not Available	52.81%
Matrix_18	AP3	Not Available	52.80%
Matrix_121	SHP1	Not Available	52.72%
Matrix_386	AGL1	DNA binding properties of two Arabidopsis MADS domain proteins: binding consensus and dimer formation	52.72%
Matrix_66	AtLEC2	Genes directly regulated by LEAFY COTYLEDON2 provide insight into the control of embryo maturation and somatic embryogenesis	52.67%
Motif_498	SGBFGMGMAUX28	bZIP proteins SGBF-1 and SGBF-2 binding site in soybean GmAux28 gene promoter	52.60%
Matrix_440	LFY	Not Available	52.55%
Matrix_184	AGL15	Not Available	52.47%
Matrix_454	AT1G77200; ATERF38; AT4G16750; AT5G52020	Not Available	52.35%
Matrix_352	LEC2	Not Available	52.33%
Matrix_162	AtPHR1	Not Available	52.31%
Matrix_109	GBF3	Not Available	52.30%
Matrix_420	ANAC58	Not Available	52.30%
Matrix_432	AT1G77920	Not Available	52.27%
Matrix_135	ABI3	Not Available	52.20%
Motif_232	ABADESI1	Responsive to ABA and desiccation; Motif I of rice rab16A-D (initially called rab-21); Expressed in seeds late during embryogenesis; Induced by ABA and osmotic stress in vegetative tissues; Contains ACGT motif; transacting factor: TAF-1	52.12%
Matrix_306	TGA1	TGA1 and G-box binding factors: two distinct classes of Arabidopsis leucine zipper proteins compete for the G-box-like element TGACGTGG	52.00%
Matrix_481	BES1	A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana	51.82%
Motif_252	GBOXPC	G box; Binding site of parsley cytosolic G-box binding factors (cytosolic GBFs); Cytosolic G-Box binding activity is modulated by light; DNA binding activity of cytosolic GBFs is regulated by cytosolic phosphorylation/dephospholylation activities; Cytosolic GBFs are translocated to the nucleus in a light-regulated manner	51.69%
Matrix_226	GATA1	Not Available	51.66%
Motif_200	GBOXLERBCS	G box; Conserved sequence upstream of light-regulated genes; Sequence found in the promoter region of rbcS of tomato and Arabidopsis; Binding with GBF	51.66%
Matrix_363	RAP2.3	Not Available	51.64%
Motif_480	ABRE2HVA1	ABA responsive element, ABRE2, found in barley HVA1 gene encoding a class 3 late embryogenesis-abundant protein; stress response	51.63%
Matrix_463	HAT3.1	Not Available	51.61%
Matrix_210	ARR1	Not Available	51.44%
Matrix_271	AT3G16350	Not Available	51.40%
Matrix_219	AGL15	Not Available	51.26%
Motif_573	HY5	Arabidopsis bZIP protein HY5 directly interacts with light-responsive promoters in mediating light control of gene expression	51.20%
Matrix_116	ANAC55	Not Available	51.18%
Matrix_283	GATA15; GATA17; AT4G16141; GATA22; GATA23; GATA16; GNC	Not Available	51.13%
Matrix_326	AT5G07310; Rap2.6L; AT5G61890	Not Available	51.11%
Matrix_128	TGA2	Not Available	51.09%
Matrix_408	GATA12	Not Available	51.09%
Motif_275	AtbZIP1	The arabidopsis bZIP1 transcription factor is involved in sugar signaling, protein networking, and DNA binding	51.08%
Matrix_4	ARR14	Not Available	51.07%
Motif_388	CPRFPCCHS; AtbZIP1	BoxII; Binding site of CPRF-1, -2, -3 and -4(Common Plant Regulatory Factor) in the parsley light responsive chalcone synthase (CHS) gene promoter; CPRF proteins are bZIP class transcription factors; CPRF proteins participates in the light-mediated activation of the CHS gene in parsley; ACE; The proline-rich domains of CPRF1 and 4 activate transcription; CPRF1-containing bZIP heterodimer interacts with ACE in vivo; ACE; Binding site of parsley bZIP factors CPRF1 and 4; Found in the parsley light responsive chalcone synthase (CHS) gene promoter; The proline-rich domains of CPRF1 and 4 activate transcription; CPRF1-containing bZIP heterodimer interacts with ACE in vivo; The arabidopsis bZIP1 transcription factor is involved in sugar signaling, protein networking, and DNA binding	51.05%
Matrix_56	BZIP17; BZIP28; BZIP49	Not Available	50.96%
Matrix_311	TGA1	Not Available	50.95%
Motif_400	ABREAZMRAB28	ABA-responsive element (ABRE A) found at -148 to -139 in maize rab28; Maize rab28 is ABA-inducible in embryos and vegetative tissues	50.93%
Matrix_151	ASIL1	Not Available	50.86%
Matrix_515	ddf2; ATCBF3; CBF1; CBF4	Not Available	50.84%
Matrix_355	ERF10; ERF11	Not Available	50.83%
Motif_180	AGL2 binding site motif	Binding consensus sequence of Arabidopsis AGL2 (AGAMOUS-like 2); AGL2 contains MADS domain; AGL2 binds DNA as a dimer	50.83%
Matrix_343	AT2G33710	Not Available	50.79%
Matrix_310	AGL3	The Arabidopsis MADS-box gene AGL3 is widely expressed and encodes a sequence-specific DNA-binding protein	50.72%
Matrix_2	SEP4	Not Available	50.72%
Matrix_417	SEP4	Not Available	50.72%
Matrix_439	AP3	Not Available	50.71%
Matrix_204	WOX13	Not Available	50.68%
Motif_197	HY5	Arabidopsis bZIP protein HY5 directly interacts with light-responsive promoters in mediating light control of gene expression	50.64%
Motif_92	ABREATRD22	ABRE (ABA responsive element) in Arabidopsis dehydration-responsive gene rd22	50.61%
Matrix_224	ERF1	Not Available	50.57%
Matrix_464	AGL15; AGL71	Not Available	50.55%
Motif_2	ACGTSEED2	ACGT motif related to seed expression; Gene: French bean phaseolin; transacting factor: 02	50.52%
Matrix_87	AT1G19000	Not Available	50.52%
Motif_234	ABADESI2	Synthetic element (hex-3) related to response to ABA and to desiccation; seed expression; Gene: synthetic; hex-3, mutant of hex-1 sequence from wheat histone H3 promoter; transacting factor: bZIP	50.45%
Matrix_169	E2F1	Not Available	50.26%
Matrix_208	AP1	Not Available	50.24%
Matrix_89	SOC1	Genome-wide identification of SOC1 and SVP targets during the floral transition in Arabidopsis	50.23%
Matrix_258	WOX13	Not Available	50.19%
Motif_571	GBOXSORBCS1	G-box found in the spinach RBCS-1 gene promoter; Located between -219 and -212; G-box trimer confers relatively high level expression in roots	50.16%
Matrix_61	ATCBF3	Not Available	50.16%
Motif_534	GBOXRELOSAMY3	G box-related element found in Amy3D (amylase) promoter of rice; Similar to ABRE	50.15%
Motif_281	ABRE3OSRAB16	ABA-responsive element of rice rab16 and alpha-amylase genes	50.08%
Matrix_492	ETT	Not Available	50.07%